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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00016265 ID=TCONS_00016265|Name=TCONS_00016265|organism=Clytia hemisphaerica|type=transcript|length=2805bp
GAGAAACTTGACCTCAAGGTTTTttagtaaaagaaaaaatcttttgacgA
AGGTTTGTTAATCCAAGATGAATTTATAGTGAACGAAAAATGACAActtc
ttgttttgaaaagttttatcaGAGATTTCGATCACTGGTTTTGTCTGTTA
AAAGGAAATCAATGCATTAAGTCAAAGTTTTACGGAGAGCGCGGGAGAGT
TGTCGACTTGTTATTTGATCAAACTTTAATGTCAACATTCGGAACAAAAA
GGATACGTTTTATTAAAACAAATATCTCACTCCTCTTATGACActtcaaa
tttaataaaaccACCAAGTCAAAACACAGTTCGCAAATAAAACTTCTTAT
GTGCTAATGCATGTGTTGTTTTGAGTCTTTATGAGAGAGTGAAGCTGTTC
ATAGCGCAAACACACCATCATGAACTATACTCAATTTCTGTACGGTGGGA
TTTCAGTGGCTTTCATATTCGTTGTAGGATTTTATCTGACCAATCGGAAC
CGTCGTAAAAGTTCCACATCTGACCAAACCAAAGATGAGAAAAGGCGACG
TCGTAAATCGTCCGCCAAAGAGACGCAAGACGGGGTGACGTTAAACGGAA
GCGTCAGGAAACGCACGGGAGAGAAAAGTAACGGGAATACGGAAACGTTA
ACGGTATCACCATCCACAGATCAAGATGAATTCGTGTTACAAACATTTTG
TAAAAGTCCTTTAACTCCACACAAAAGGTTATCTATCCATCATGGACATG
ATGATTTTGCTTTCGATCGACCACAAGATAAAGACGATGGAAAAATACGC
CATGTTGATTTTGATGCTATTTCAATTGCAAAGGTCACGGAGGAACAATA
TGCAGAAAGTTTGGATGAAAATAGGAATAGTGAGAAAATGAAAGATGTGA
CTATGGGCCAGGGACACGGTAAAGAGGATCAACTTGCTGAAAATGAACCT
AAAACTGTTGAAAATGAACTAAGAACTGCTGGAAATGAACTAAGAACTGC
TAAAAATGAAGAAGCAAAGCTTTATAAAGATGTTGATGCTTCAGAGATCA
TCTTTGAAGAGGATTCTCAGTCGAAAGATgaatcaaaaagtgaaaattca
GAGGTACTCGTGAAAGTCAATGAATTTGTTGaaagtaatgaaaataaaat
tgacgAGAAAGAGAGACAAATTGTTGAAACTGGAATTGTTGAAAGCGTGA
CCGAAAATGTTAATAGAGAGCCACCTGCAAAAAGATTAAGCAAATTTAAA
CTTTTCGTGTTTCAAGAATATGCAGATCGAATGAGTGATCGTATCTTATC
GAACACTTCCACGACGTTAGATCAGTTTCATGATTCACAAGTGGATTTCG
CTGAAGACCTCTCGCTCACTGTTTTATATGAAGCCAGGAAAGAAGTTTAT
AACAACACGTCCACAAGCACACAGGCTAATGATGAGGAAAATAACAATAA
CGAAAGTACGCTTGACATGATAGCGGATAAACTTGTCGATCaaattttat
ttggaaaaacTTCTCCTCAAAACAAACTTGCTTCAACTGCTACTATAGAG
AAACCACCAGAACCTTCTGAAAAGGCTGCTATTCCCTCTGATTCAACAAT
ATCTGTAGAAAATGATAATAAACTTGATGTCGAGGACGGAGCGATCAAAA
CGGACTATGGCCGCCCACTTTCTGGTTACGCCAAAAATTTAGCAGATTTC
CTCGcagatgatgatgaatttgAATTAAGCGATGCAGAGGATGAAGATGC
AAAAGAGGAAATTGCTAGACCAAGGTCGGTTGGGGCAAGACCAAGCAGGG
AGGGAGCTAGAGACAGTCAAGAGGAGAGTGATTACGAAGACACAGAAGAT
GACGAAGACGAGCTTTCGGATGACGAAGATGAAAGTTTTCTTGACGAGGA
AaatgtttcttttgaaaatgacgATGAAAGGACTACAATTTTCGTGAATG
CTGATTTTGTTGATGATGAGGtagcaaagaaagaaaaattagaaacaaaa
gaatttgagaCTCAAAAACTACAAGAACCTTTAGAAACGAGTGCTGTTGA
AAAACAAGAACCTGAGATTAAGATAGAAACGGAAAACAAAAAAGCCAAAA
CATCACAATATGCTCCTGCAGTGAAGCGACGTCAAAATAATCGGCGCACG
AGAGGAGAGCGTCCTAAGAGTTTATATGAACAAGATCTACAGGAGATTTT
CAACGAGATTAAGATGCCGGCAGACGAGGATGGCGGCAATGATGATCAAG
ATGACAGCAAAGAGGTTTTGGAGGATGGTATTAAGCCAGTGTCGGAAACG
ATGAACTTCTTGGAGAATCATATCGAAGCGAAACGAAACATGATGAAGAg
aaacgaagaagaagaagaagaatattTGATGATGGACGAAGATGAACACG
TTTCAAACAATTCAAGTGATTTGCTGGGTTgtcaaaaaacaaagaaagtc
tCACAACAAAAACCGCCAGTACTTGGTCGCGCGGCCGTTATTGATTTTGG
ATGTGGTGCTCTGAAAGCAGGTCTTTCAGGGGATATCCGCCCGTCATGTT
ACTGTCCGTCAGTCATCGGCGTACCACGGAGGTTTTCTCAGGACGTCAGT
AAAATGAAGAAAGGATTTTACGTTGGTGATGAAGCATGGGAGATTGCTGG
TATGTTGCAGATCGAACATCCAATCAAACAAGAGATTAACAACTGGTCGG
ACATCGGCAAcatttttgaatatctttacgaTGAAGAACTGAAGATCAAC
AGTAACGAACATCCCATGCTTCTCACTGAACCTGGCCTTACTTCCTCAAC
TCATC Run BLAST on NCBI transcript from alignment at sc0000232:367572..372039+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00016265 ID=TCONS_00016265|Name=TCONS_00016265|organism=Clytia hemisphaerica|type=transcript|length=4468bp|location=Sequence derived from alignment at sc0000232:367572..372039+ (Clytia hemisphaerica)
GAGAAACTTGACCTCAAGGTTTTttagtaaaagaaaaaatcttttgacgA
AGGTTTGTTAATCCAAGATGAATTTATAGTGAACGAAAAATGACAActtc
ttgttttgaaaagttttatcaGAGATTTCGATCACTGGTTTTGTCTGTTA
AAAGGAAATCAATGCATTAAGTCAAAGTTTTACGGAGAGCGCGGGAGAGT
TGTCGACTTGTTATTTGATCAAACTTTAATGTCAACATTCGGAACAAAAA
GGATACGTTTTATTAAAACAAATATCTCACTCCTCTTATGACActtcaaa
tttaataaaaccACCAAGTCAAAACACAGTTCGCAAATAAAACTTCTTAT
GTGCTAATGCATGTGTTGTTTTGAGTCTTTATGAGAGAGTGAAGCTGTTC
ATAGCGCAAACACACCATCATGAACTATACTCAATTTCTGTACGGTGGGA
TTTCAGTGGCTTTCATATTCGTTGTAGGATTTTATCTGACCAATCGGAAC
CGTCGTAAAAGTTCCACATCTGACCAAACCAAAGATGAGAAAAGGCGACG
TCGTAAATCGTCCGCCAAAGAGACGCAAGACGGGGTGACGTTAAACGGAA
GCGTCAGGAAACGCACGGGAGAGAAAAGTAACGGGAATACGGAAACGTTA
ACGGTATCACCATCCACAGATCAAGATGAATTCGTGTTACAAACATTTTG
TAAAAGTCCTTTAACTCCACACAAAAGGTTATCTATCCATCATGGACATG
ATGATTTTGCTTTCGATCGACCACAAGATAAAGACGATGGAAAAATACGC
CATGTTGATTTTGATGCTATTTCAATTGCAAAGGTCACGGAGGAACAATA
TGCAGAAAGTTTGGATGAAAATAGGAATAGTGAGAAAATGAAAGATGTGA
CTATGGGCCAGGGACACGGTAAAGAGGATCAACTTGCTGAAAATGAACCT
AAAACTGTTGAAAATGAACTAAGAACTGCTGGAAATGAACTAAGAACTGC
TAAAAATGAAGAAGCAAAGCTTTATAAAGATGTTGATGCTTCAGAGATCA
TCTTTGAAGAGGATTCTCAGTCGAAAGATgaatcaaaaagtgaaaattca
GAGGTACTCGTGAAAGTCAATGAATTTGTTGaaagtaatgaaaataaaat
tgacgAGAAAGAGAGACAAATTGTTGAAACTGGAATTGTTGAAAGCGTGA
CCGAAAATGTTAATAGAGAGCCACCTGCAAAAAGATTAAGCAAATTTAAA
CTTTTCGTGTTTCAAGAATATGCAGATCGAATGAGTGATCGTATCTTATC
GAACACTTCCACGACGTTAGATCAGTTTCATGATTCACAAGTGGATTTCG
CTGAAGACCTCTCGCTCACTGTTTTATATGAAGCCAGGAAAGAAGTTTAT
AACAACACGTCCACAAGCACACAGGCTAATGATGAGGAAAATAACAATAA
CGAAAGTACGCTTGACATGATAGCGGATAAACTTGTCGATCaaattttat
ttggaaaaacTTCTCCTCAAAACAAACTTGCTTCAACTGCTACTATAGAG
AAACCACCAGAACCTTCTGAAAAGGCTGCTATTCCCTCTGATTCAACAAT
ATCTGTAGAAAATGATAATAAACTTGATGTCGAGGACGGAGCGATCAAAA
CGGACTATGGCCGCCCACTTTCTGGTTACGCCAAAAATTTAGCAGATTTC
CTCGcagatgatgatgaatttgAATTAAGCGATGCAGAGGATGAAGATGC
AAAAGAGGAAATTGCTAGACCAAGGTCGGTTGGGGCAAGACCAAGCAGGG
AGGGAGCTAGAGACAGTCAAGAGGAGAGTGATTACGAAGACACAGAAGAT
GACGAAGACGAGCTTTCGGATGACGAAGATGAAAGTTTTCTTGACGAGGA
AaatgtttcttttgaaaatgacgATGAAAGGACTACAATTTTCGTGAATG
CTGATTTTGTTGATGATGAGGtagcaaagaaagaaaaattagaaacaaaa
gaatttgagaCTCAAAAACTACAAGAACCTTTAGAAACGAGTGCTGTTGA
AAAACAAGAACCTGAGATTAAGATAGAAACGGAAAACAAAAAAGCCAAAA
CATCACAATATGCTCCTGCAGTGAAGCGACGTCAAAATAATCGGCGCACG
AGAGGAGAGCGTCCTAAGAGTTTATATGAACAAGATCTACAGGAGATTTT
CAACGAGATTAAGATGCCGGCAGACGAGGATGGCGGCAATGATGATCAAG
ATGACAGCAAAGAGGTTTTGGAGGATGGTATTAAGCCAGTGTCGGAAACG
ATGAACTTCTTGGAGAATCATATCGAAGCGAAACGAAACATGATGAAGAg
aaacgaagaagaagaagaagaatattTGATGATGGACGAAGATGAACACG
TTTCAAACAATTCAAGTGATTTGCTGGGTTgtcaaaaaacaaagaaagtc
tCACAACAAAAACGTGAGTCTGCATTTTTGATATCCCTCTTCTCTCTTTT
TGTTCAATCACTGATAAAGTTATATCATGTGGCGTTTATACCTACAAATA
CCTAAACTAAACCCtgctttaaaataaaaatacagtgGAAacgaaaaagg
gaaaattttgacagactttattcCGAAGAAAGCAGCCTGTTGATTATCCT
CCGTTTTATCCTCCATGGTAAGCTTTCTGTGGCTTATTTTCCCAGCAATA
GTGTCCTTGCTTTCATAAGCTTTCAGTCAGTTTATCGAGATCTAAAAAAC
ATTGTTCTATTTTCTTTCAGCGCCAGTACTTGGTCGCGCGGCCGTTATTG
ATTTTGGATGTGGTGCTCTGAAAGCAGGTCTTTCAGGGGATATCCGCCCG
TCATGTTACTGTCCGTCAGTCATCGGCGTACCACGGAGGTTTTCTCAGGA
CGTCAGTAAAATGAAGAAAGGATTTTACGTTGGTGATGAAGCATGGGAGA
TTGCTGGTATGTTGCAGATCGGTAAGTTTGTTTGTTCACACATACATTCC
AAAATTAATTATTACTAGTCCAATTCAAATTGGGGAATTCCATTGAAAAA
TTCCACTCACCCAAAGGATAaagatttccgaaaaaattgttttaaagttt
aaacagGTATACTCAATCACTATGATCGAGTTCAAGTTTTCCTTGGAGCA
CGTTTCCTCTAATTTTCCATCTTTTCATTTAATGACGGTCTTACCTCCGC
TCTTTTCTCCCTTTGTTCACAGAACATCCAATCAAACAAGAGATTAACAA
CTGGTCGGACATCGGCAAcatttttgaatatctttacgaTGAAGAACTGA
AGATCAACAGTAACGAACATCCCATGCTTCTCACTGAACCTGGCCTTACT
TCCTCAACTCATCGAGAAAAGTTGATTGAGGTCAGTTCTTCCTTTACTCG
GTGTTTCTCCTTTGAGGGCTGGTCATTTCTAGAATTGATACATGCCCATT
AGATAACTGTGACTGAGGAAAAAGTGATAGGATAGGAGCTTATGacatag
tgtccttcagggtctctccccccccatgcctagaatgaaaattttccatt
cccccctcATTTTTCCCCACCCTGCCTCCAAAAATTTCTCTGTCCCCCCC
CCTCAAGNTCAATCACTGATAAAGTTATATCATGTGGCGTTTATACCTAC
AAATACCTAAACTAAACCCtgctttaaaataaaaatacagtgGAAacgaa
aaagggaaaattttgacagactttattcCGAAGAAAGCAGCCTGTTGATT
ATCCTCCGTTTTATCCTCCATGGTAAGCTTTCTGTGGCTTATTTTCCCAG
CAATAGTGTCCTTGCTTTCATAAGCTTTCAGTCAGTTTATCGAGATCTAA
AAAACATTGTTCTATTTTCTTTCAGCGCCAGTACTTGGTCGCGCGGCCGT
TATTGATTTTGGATGTGGTGCTCTGAAAGCAGGTCTTTCAGGGGATATCC
GCCCGTCATGTTACTGTCCGTCAGTCATCGGCGTACCACGGAGGTTTTCT
CAGGACGTCAGTAAAATGAAGAAAGGATTTTACGTTGGTGATGAAGCATG
GGAGATTGCTGGTATGTTGCAGATCGGTAAGTTTGTTTGTTCACACATAC
ATTCCAAAATTAATTATTACTAGTCCAATTCAAATTGGGGAATTCCATTG
AAAAATTCCACTCACCCAAAGGATAaagatttccgaaaaaattgttttaa
agtttaaacagGTATACTCAATCACTATGATCGAGTTCAAGTTTTCCTTG
GAGCACGTTTCCTCTAATTTTCCATCTTTTCATTTAATGACGGTCTTACC
TCCGCTCTTTTCTCCCTTTGTTCACAGAACATCCAATCAAACAAGAGATT
AACAACTGGTCGGACATCGGCAAcatttttgaatatctttacgaTGAAGA
ACTGAAGATCAACAGTAACGAACATCCCATGCTTCTCACTGAACCTGGCC
TTACTTCCTCAACTCATC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00016265-exon-sc0000232-1491911889:367572..370034 | TCONS_00016265-exon-sc0000232-1491911889:367572..370034 | Clytia hemisphaerica | exon |
| TCONS_00016265-exon-sc0000232-1510915933:367572..370034 | TCONS_00016265-exon-sc0000232-1510915933:367572..370034 | Clytia hemisphaerica | exon |
| TCONS_00016265-exon-sc0000232-1575043694:367572..370034 | TCONS_00016265-exon-sc0000232-1575043694:367572..370034 | Clytia hemisphaerica | exon |
| TCONS_00016265-exon-sc0000232-1491911889:371447..371647 | TCONS_00016265-exon-sc0000232-1491911889:371447..371647 | Clytia hemisphaerica | exon |
| TCONS_00016265-exon-sc0000232-1510915933:371447..371647 | TCONS_00016265-exon-sc0000232-1510915933:371447..371647 | Clytia hemisphaerica | exon |
| TCONS_00016265-exon-sc0000232-1575043694:371447..371647 | TCONS_00016265-exon-sc0000232-1575043694:371447..371647 | Clytia hemisphaerica | exon |
| TCONS_00016265-exon-sc0000232-1491911889:371899..372039 | TCONS_00016265-exon-sc0000232-1491911889:371899..372039 | Clytia hemisphaerica | exon |
| TCONS_00016265-exon-sc0000232-1510915933:371899..372039 | TCONS_00016265-exon-sc0000232-1510915933:371899..372039 | Clytia hemisphaerica | exon |
| TCONS_00016265-exon-sc0000232-1575043694:371899..372039 | TCONS_00016265-exon-sc0000232-1575043694:371899..372039 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000232 | supercontig | sc0000232:367572..372039 + |
Blast
BLAST of TCONS_00016265 vs. Swiss-Prot (Human)
Match: ACTG (Actin, cytoplasmic 2 OS=Homo sapiens GN=ACTG1 PE=1 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 2.038e-16 Identity = 44/104 (42.31%), Postives = 60/104 (57.69%), Query Frame = 3
Query: 2481 AAVIDFGCGALKAGLSGDIRPSCYCPSVIGVPRRFSQDVSKMKKGFYVGDEAWEIAGMLQIEHPIKQEI-NNWSDIGNIFEYLYDEELKINSNEHPMLLTEPGL 2789
A VID G G KAG +GD P PS++G PR V +K YVGDEA G+L +++PI+ I NW D+ I+ + + EL++ EHP+LLTE L
Sbjct: 7 ALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPL 110
The following BLAST results are available for this feature:
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