TCONS_00016291 (transcript) - C. hemisphaerica

Overview
NameTCONS_00016291
Unique NameTCONS_00016291
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2733

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00016291 ID=TCONS_00016291|Name=TCONS_00016291|organism=Clytia hemisphaerica|type=transcript|length=2733bp
AGTTGAACGATTCAAATGTATCGCTTCGTGTAGCAGCAAATGCGGTCAAT
TGTATAGCTGATAATTCGCTTTCAGTTCGCGAGCGTGAGCGTGATAGTCT
GCGTGCCGACTCACGAACATGTATTTCAAGGCTCCTCTTAAAgcgttgtt
ttcttttcatttcgAACGCATGCCGTGTGTTTTGATGAGCTTTAAAGATC
ATGATGTAGAGTTTGTAGGTGTAGATTAAGATGAAATGAACGTAGTTTAG
CGCTAGTATAATAACAAGCATGGTCACTGTTTTCGTGTGCTCGCTCAGTT
GTGTTTGATAGACGGCAAATCCGGCAATCAAGATCACGCTTGATGTAAAA
GACGAATATGTGACGTGCGACGTTTCTCGGTAATGCGACGGTACGTGACG
GGAACGTATACCTTGTATGACGTTTAAGATATCGATGATGAAGATGAACC
CGAGCTGGATCAAAACGTCTTCGTTGTTACTGCAATGAAATTCTTGGCTT
AGTGATTTGGGATACGTCGTTATTTCCTTTCGTGGCGGATCATCGAATAA
GATAATCGCAATCAAAAGTGAAATATCAACTAAGAAAGCTAACATGATAG
TGATCACTGTTGATGCACGTGCTTTTTGAATCTCACGTTTTGACATGCGT
AGCTTAGCTTTGAAAATCAACAATACTTTATGTGTTTTACCGAGATTTAT
GGACGTAATTAAGGTAAATAGAACACCAACCACAATAGGTCTTGAAATGC
ATTTCACATAATTTGGATATCCTATGAACACGCAGACACTTGAAACAGTC
AATACAGCGTGTGCTAGTATTTGACATAAGGTGACGTGCGAACTTGACGC
CATCACGATAGGGGTATCACGTTTTCGCAAATACATGATCAATGTGAAAA
TAACGATCAATAGTAGAAGTCCGGACAAACTAACGATAACCAAAGTCGCA
GGAGACCTGGTATTGAACTGGAGGTAAAGTTTGGTGTAAGGGTCAAAGCA
ATAGGTTCTTGATCGATCGCTCATCTCNATAAAGTTTGGTGTAAGGATCA
AAGCAATAGGTTCTTGATCGATCGCTCATCTCCCCTTGAGGACATTTTCG
GCAAGAAGTTTGATTTTCGTTCCGAAAGTACAGTTCATGACAGGTCTTGC
AATACCAACCATAGCTTGTATCCCAgcctttttctttgtaaaacgAATGT
TTAAGTTCAGCACCTAGGCTACATTTCGGTTTAGTTAAATGACAGAATGG
TTTAGCTTTCAATGCGTTTAGTGGGTCGTATTCTTTGTGGCGAAAGAGTT
CTTTAAGCTCAACTAAATTGACGTAAAATGTATTTCTCCACGCGCTGATT
TGTGCTTTGATAACACGTTTGTCGAATCTAAGAGAATTGAAAACCAGATC
TTTAACGAAATCGTTTAAACCAACCCAGTCACTGACATTGAAACCAACAG
GAATAATTGTTGATAGAAAATGTCCAGGTGGGAAAAGTTTGTTGATGTCA
TTGTCTTGCAATATACGTTCCATGAAGCTTTTCTGATAGAAATTTCTCTT
AAAATCATGAGTGAAATATAGTAGATTGTTCATGGCTAATGCGCCAGGGA
TGTCATAGAAAACGTTGAGATAGTCATCAATAAGAAGTGCTTTGATATCA
CGTCCGTGCCCTGTGTTATTGGCAACCCGTATATCTTCACTGTAACTTTT
GTTTGTCGAAAGATCTAACACTTCGTAATTCAAGAAGTATAATCTATCCC
ATGCTTTAGTTTTCATGTGTTCTTTTCTTACATTGAACTGGCGTAGATTT
CTATTACTGCCATACAGGACTATGAAGGATAACCGAGGCTGTTTTAAAAT
CAGTTCGATAGTATGTTTGATTTCTTGGTCATTGTTTATATCCACGCTTG
TCTCTTTGAGACATCCTTTGTCCTTGTACACCATGTGATAGTACGTACAA
AACGCGCTTGCATCATCTGTATGACATTGTCGATTTTGTGAAAGTTTCCC
TGGTGTATCTTGAATATTCAGTACAGCGGCTACTGTTATATTAAGCTCTT
TACGAAATGCATTAATTCCGTTCTGGTGTAGGTTTCGTCCAAAACTAGCT
TCATAGCTATACACAAAATATGGATGCTCTAACAGGCTTCCAGGGTAGAT
GGGTTGAAAGGTCAATGCGAATAAAGGGATATCGCGAGGTAAGAGTATTG
CGCTAAGTAGTTGCGTTAATTCGAATGTTAACAAAGACAATACTACAATT
CCGTCCAAATTTCTGGTTCCTTTGATATTATTGTCAATACATTTTCCTGT
TAGAGTTATATAGTTTTGTGTAACTAACGGGAGTGCAGCGTCTAAGAGTT
TCCGAGGCTGATCTCCGCCAACATCCATCGAACAGACTGGCATTGGAGcg
ttcaaaattttatcattctGCTTGATTTTCTCTCTTATAATACGTTCGTG
GTGTACTGCATTTGAACAACTGAACTCGTACTGGCTTTGACATGATGTCA
TCGAGAACAATCCGTACAACCAATAAGGTTCTCCCACAGAGCTGGCAATG
ATACCAAATAATATGGTTAGAATCATCAGGAAATTCATTGTTGTCACCTC
AAATCAACAATAGTGTTTTTCTGTATATCTCTTTGTAGTTTTTATGATGG
TGActtcaaatcaataattcttaaATCTTCTTTTCTCGAAATAGCAGCAG
TATACGTTTTTTGTTCTCTCTATCTTCAAAAAC
Run BLAST on NCBI

transcript from alignment at sc0000232:85324..88056-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00016291 ID=TCONS_00016291|Name=TCONS_00016291|organism=Clytia hemisphaerica|type=transcript|length=2733bp|location=Sequence derived from alignment at sc0000232:85324..88056- (Clytia hemisphaerica)
AGTTGAACGATTCAAATGTATCGCTTCGTGTAGCAGCAAATGCGGTCAAT
TGTATAGCTGATAATTCGCTTTCAGTTCGCGAGCGTGAGCGTGATAGTCT
GCGTGCCGACTCACGAACATGTATTTCAAGGCTCCTCTTAAAGCGTTGTT
TTCTTTTCATTTCGAACGCATGCCGTGTGTTTTGATGAGCTTTAAAGATC
ATGATGTAGAGTTTGTAGGTGTAGATTAAGATGAAATGAACGTAGTTTAG
CGCTAGTATAATAACAAGCATGGTCACTGTTTTCGTGTGCTCGCTCAGTT
GTGTTTGATAGACGGCAAATCCGGCAATCAAGATCACGCTTGATGTAAAA
GACGAATATGTGACGTGCGACGTTTCTCGGTAATGCGACGGTACGTGACG
GGAACGTATACCTTGTATGACGTTTAAGATATCGATGATGAAGATGAACC
CGAGCTGGATCAAAACGTCTTCGTTGTTACTGCAATGAAATTCTTGGCTT
AGTGATTTGGGATACGTCGTTATTTCCTTTCGTGGCGGATCATCGAATAA
GATAATCGCAATCAAAAGTGAAATATCAACTAAGAAAGCTAACATGATAG
TGATCACTGTTGATGCACGTGCTTTTTGAATCTCACGTTTTGACATGCGT
AGCTTAGCTTTGAAAATCAACAATACTTTATGTGTTTTACCGAGATTTAT
GGACGTAATTAAGGTAAATAGAACACCAACCACAATAGGTCTTGAAATGC
ATTTCACATAATTTGGATATCCTATGAACACGCAGACACTTGAAACAGTC
AATACAGCGTGTGCTAGTATTTGACATAAGGTGACGTGCGAACTTGACGC
CATCACGATAGGGGTATCACGTTTTCGCAAATACATGATCAATGTGAAAA
TAACGATCAATAGTAGAAGTCCGGACAAACTAACGATAACCAAAGTCGCA
GGAGACCTGGTATTGAACTGGAGGTAAAGTTTGGTGTAAGGGTCAAAGCA
ATAGGTTCTTGATCGATCGCTCATCTCNATAAAGTTTGGTGTAAGGATCA
AAGCAATAGGTTCTTGATCGATCGCTCATCTCCCCTTGAGGACATTTTCG
GCAAGAAGTTTGATTTTCGTTCCGAAAGTACAGTTCATGACAGGTCTTGC
AATACCAACCATAGCTTGTATCCCAGCCTTTTTCTTTGTAAAACGAATGT
TTAAGTTCAGCACCTAGGCTACATTTCGGTTTAGTTAAATGACAGAATGG
TTTAGCTTTCAATGCGTTTAGTGGGTCGTATTCTTTGTGGCGAAAGAGTT
CTTTAAGCTCAACTAAATTGACGTAAAATGTATTTCTCCACGCGCTGATT
TGTGCTTTGATAACACGTTTGTCGAATCTAAGAGAATTGAAAACCAGATC
TTTAACGAAATCGTTTAAACCAACCCAGTCACTGACATTGAAACCAACAG
GAATAATTGTTGATAGAAAATGTCCAGGTGGGAAAAGTTTGTTGATGTCA
TTGTCTTGCAATATACGTTCCATGAAGCTTTTCTGATAGAAATTTCTCTT
AAAATCATGAGTGAAATATAGTAGATTGTTCATGGCTAATGCGCCAGGGA
TGTCATAGAAAACGTTGAGATAGTCATCAATAAGAAGTGCTTTGATATCA
CGTCCGTGCCCTGTGTTATTGGCAACCCGTATATCTTCACTGTAACTTTT
GTTTGTCGAAAGATCTAACACTTCGTAATTCAAGAAGTATAATCTATCCC
ATGCTTTAGTTTTCATGTGTTCTTTTCTTACATTGAACTGGCGTAGATTT
CTATTACTGCCATACAGGACTATGAAGGATAACCGAGGCTGTTTTAAAAT
CAGTTCGATAGTATGTTTGATTTCTTGGTCATTGTTTATATCCACGCTTG
TCTCTTTGAGACATCCTTTGTCCTTGTACACCATGTGATAGTACGTACAA
AACGCGCTTGCATCATCTGTATGACATTGTCGATTTTGTGAAAGTTTCCC
TGGTGTATCTTGAATATTCAGTACAGCGGCTACTGTTATATTAAGCTCTT
TACGAAATGCATTAATTCCGTTCTGGTGTAGGTTTCGTCCAAAACTAGCT
TCATAGCTATACACAAAATATGGATGCTCTAACAGGCTTCCAGGGTAGAT
GGGTTGAAAGGTCAATGCGAATAAAGGGATATCGCGAGGTAAGAGTATTG
CGCTAAGTAGTTGCGTTAATTCGAATGTTAACAAAGACAATACTACAATT
CCGTCCAAATTTCTGGTTCCTTTGATATTATTGTCAATACATTTTCCTGT
TAGAGTTATATAGTTTTGTGTAACTAACGGGAGTGCAGCGTCTAAGAGTT
TCCGAGGCTGATCTCCGCCAACATCCATCGAACAGACTGGCATTGGAGCG
TTCAAAATTTTATCATTCTGCTTGATTTTCTCTCTTATAATACGTTCGTG
GTGTACTGCATTTGAACAACTGAACTCGTACTGGCTTTGACATGATGTCA
TCGAGAACAATCCGTACAACCAATAAGGTTCTCCCACAGAGCTGGCAATG
ATACCAAATAATATGGTTAGAATCATCAGGAAATTCATTGTTGTCACCTC
AAATCAACAATAGTGTTTTTCTGTATATCTCTTTGTAGTTTTTATGATGG
TGACTTCAAATCAATAATTCTTAAATCTTCTTTTCTCGAAATAGCAGCAG
TATACGTTTTTTGTTCTCTCTATCTTCAAAAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009094XLOC_009094Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016291-exon-sc0000232-1575043694:85324..88056TCONS_00016291-exon-sc0000232-1575043694:85324..88056Clytia hemisphaericaexon
TCONS_00016291-exon-sc0000232-1510915933:85324..88056TCONS_00016291-exon-sc0000232-1510915933:85324..88056Clytia hemisphaericaexon
TCONS_00016291-exon-sc0000232-1491911889:85324..88056TCONS_00016291-exon-sc0000232-1491911889:85324..88056Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000232supercontigsc0000232:85324..88056 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0702808	0.0243294	0.197741	0.082911	0	0	0.0962284	0.180176	0.473794	0.364586	0.303322	0.465249	0.79646	0.620349	0.32584	0.395287	0.0936463	0.268756	0.119536	0.222023	0.0964892	0.070596	0	0.0260072	0	0	0.102631	0.0730203	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00016291 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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