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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00016292 ID=TCONS_00016292|Name=TCONS_00016292|organism=Clytia hemisphaerica|type=transcript|length=1311bp
AGTTGAACGATTCAAATGTATCGCTTCGTGTAGCAGCAAATGCGGTCAAT
TGTATAGCTGATAATTCGCTTTCAGTTCGCGAGCGTGAGCGTGATAGTCT
GCGTGCCGACTCACGAACATGTATTTCAAGGCTCCTCTTAAAgcgttgtt
ttcttttcatttcgAACGCATGCCGTGTGTTTTGATGAGCTTTAAAGATC
ATGATGTAGAGTTTGTAGGTGTAGATTAAGATGAAATGAACGTAGTTTAG
CGCTAGTATAATAACAAGCATGGTCACTGTTTTCGTGTGCTCGCTCAGTT
GTGTTTGATAGACGGCAAATCCGGCAATCAAGATCACGCTTGATGTAAAA
GACGAATATGTGACGTGCGACGTTTCTCGGTAATGCGACGGTACGTGACG
GGAACGTATACCTTGTATGACGTTTAAGATATCGATGATGAAGATGAACC
CGAGCTGGATCAAAACGTCTTCGTTGTTACTGCAATGAAATTCTTGGCTT
AGTGATTTGGGATACGTCGTTATTTCCTTTCGTGGCGGATCATCGAATAA
GATAATCGCAATCAAAAGTGAAATATCAACTAAGAAAGCTAACATGATAG
TGATCACTGTTGATGCACGTGCTTTTTGAATCTCACGTTTTGACATGCGT
AGCTTAGCTTTGAAAATCAACAATACTTTATGTGTTTTACCGAGATTTAT
GGACGTAATTAAGGTAAATAGAACACCAACCACAATAGGTCTTGAAATGC
ATTTCACATAATTTGGATATCCTATGAACACGCAGACACTTGAAACAGTC
AATACAGCGTGTGCTAGTATTTGACATAAGGTGACGTGCGAACTTGACGC
CATCACGATAGGGGTATCACGTTTTCGCAAATACATGATCAATGTGAAAA
TAACGATCAATAGTAGAAGTCCGGACAAACTAACGATAACCAAAGTCGCA
GGAGACCTGGTATTGAACTGGAGGTAAAGTTTGGTGTAAGGGTCAAAGCA
ATAGGTTCTTGATCGATCGCTCATCTCCCCTTGAGGACATTTTCGGCAAG
AAGTTTGATTTTCGTTCCGAAAGTACAGTTCATGACAGGTCTTGCAATAC
CAACCATAGCTTGTATCCCAgcctttttctttgtaaaacgAATGTTTAAG
TTCAGCACCTAGGCTACATTTCGGTTTAGTTAAATGACAGAATGGTTTAG
CTTTCAATGCGTTTAGTGGGTCGTATTCTTTGTGGCGAAAGAGTTCTTTA
AGCTCAACTAAATTGACGTAAAATGTATTTCTCCACGCGCTGATTTGTGC
TTTGATAACAC Run BLAST on NCBI transcript from alignment at sc0000232:86691..88056- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00016292 ID=TCONS_00016292|Name=TCONS_00016292|organism=Clytia hemisphaerica|type=transcript|length=1366bp|location=Sequence derived from alignment at sc0000232:86691..88056- (Clytia hemisphaerica)
AGTTGAACGATTCAAATGTATCGCTTCGTGTAGCAGCAAATGCGGTCAAT
TGTATAGCTGATAATTCGCTTTCAGTTCGCGAGCGTGAGCGTGATAGTCT
GCGTGCCGACTCACGAACATGTATTTCAAGGCTCCTCTTAAAGCGTTGTT
TTCTTTTCATTTCGAACGCATGCCGTGTGTTTTGATGAGCTTTAAAGATC
ATGATGTAGAGTTTGTAGGTGTAGATTAAGATGAAATGAACGTAGTTTAG
CGCTAGTATAATAACAAGCATGGTCACTGTTTTCGTGTGCTCGCTCAGTT
GTGTTTGATAGACGGCAAATCCGGCAATCAAGATCACGCTTGATGTAAAA
GACGAATATGTGACGTGCGACGTTTCTCGGTAATGCGACGGTACGTGACG
GGAACGTATACCTTGTATGACGTTTAAGATATCGATGATGAAGATGAACC
CGAGCTGGATCAAAACGTCTTCGTTGTTACTGCAATGAAATTCTTGGCTT
AGTGATTTGGGATACGTCGTTATTTCCTTTCGTGGCGGATCATCGAATAA
GATAATCGCAATCAAAAGTGAAATATCAACTAAGAAAGCTAACATGATAG
TGATCACTGTTGATGCACGTGCTTTTTGAATCTCACGTTTTGACATGCGT
AGCTTAGCTTTGAAAATCAACAATACTTTATGTGTTTTACCGAGATTTAT
GGACGTAATTAAGGTAAATAGAACACCAACCACAATAGGTCTTGAAATGC
ATTTCACATAATTTGGATATCCTATGAACACGCAGACACTTGAAACAGTC
AATACAGCGTGTGCTAGTATTTGACATAAGGTGACGTGCGAACTTGACGC
CATCACGATAGGGGTATCACGTTTTCGCAAATACATGATCAATGTGAAAA
TAACGATCAATAGTAGAAGTCCGGACAAACTAACGATAACCAAAGTCGCA
GGAGACCTGGTATTGAACTGGAGGTAAAGTTTGGTGTAAGGGTCAAAGCA
ATAGGTTCTTGATCGATCGCTCATCTCNATAAAGTTTGGTGTAAGGATCA
AAGCAATAGGTTCTTGATCGATCGCTCATCTCCCCTTGAGGACATTTTCG
GCAAGAAGTTTGATTTTCGTTCCGAAAGTACAGTTCATGACAGGTCTTGC
AATACCAACCATAGCTTGTATCCCAGCCTTTTTCTTTGTAAAACGAATGT
TTAAGTTCAGCACCTAGGCTACATTTCGGTTTAGTTAAATGACAGAATGG
TTTAGCTTTCAATGCGTTTAGTGGGTCGTATTCTTTGTGGCGAAAGAGTT
CTTTAAGCTCAACTAAATTGACGTAAAATGTATTTCTCCACGCGCTGATT
TGTGCTTTGATAACAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00016292-exon-sc0000232-1575043694:87053..88056 | TCONS_00016292-exon-sc0000232-1575043694:87053..88056 | Clytia hemisphaerica | exon |
| TCONS_00016292-exon-sc0000232-1575043694:86691..86997 | TCONS_00016292-exon-sc0000232-1575043694:86691..86997 | Clytia hemisphaerica | exon |
| TCONS_00016292-exon-sc0000232-1510915933:87053..88056 | TCONS_00016292-exon-sc0000232-1510915933:87053..88056 | Clytia hemisphaerica | exon |
| TCONS_00016292-exon-sc0000232-1510915933:86691..86997 | TCONS_00016292-exon-sc0000232-1510915933:86691..86997 | Clytia hemisphaerica | exon |
| TCONS_00016292-exon-sc0000232-1491911889:87053..88056 | TCONS_00016292-exon-sc0000232-1491911889:87053..88056 | Clytia hemisphaerica | exon |
| TCONS_00016292-exon-sc0000232-1491911889:86691..86997 | TCONS_00016292-exon-sc0000232-1491911889:86691..86997 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000232 | supercontig | sc0000232:86691..88056 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
BLAST of TCONS_00016292 vs. Swiss-Prot (Human)
Match: GRM8 (Metabotropic glutamate receptor 8 OS=Homo sapiens GN=GRM8 PE=2 SV=2) HSP 1 Score: 86.6557 bits (213), Expect = 5.120e-18 Identity = 87/336 (25.89%), Postives = 155/336 (46.13%), Query Frame = -3
Query: 137 WYCKTCHELYFRNENQTSCRKCPQGEMSDRSRTYC-FDPYTKLYLQFNTRSPATXXXXXXXXXXXXXXIFTLIMYLRKRDTPIVMASSSHVTLCQILAHAVLTVSSVCVFIGYPNYVKCISRPIVVGVLFTLITSINLGKTHKVLLIF-KAKLRMSKREIQKARASTVITIMLAFLVDISLLIAIILF-DDPPR------KEITTYPKSLSQEFHCSNNEDVLI-QLGFIFIIDILNVIQGIRSRHVPSHYRETSHVTYSSFTSSVILIA----GFAVYQTQLSEHTKTVTMLVIILALNYVHFILIYTYKLYIMIFKAHQNTRHAFEMKRKQRFK 1102
W+C+ C E Y ++ SC CP + + +RT C P KL SP +V V ++ L ++ F ++ ++R DTPIV AS ++ +L L S + I P+ + C R + +G+ + L KT+++ IF + K ++ + + VIT L+ + LL + F DPP ++ T P+ C ++ LI LG+ ++ + + I++R VP + E + ++ +T+ +I +A F Q+ + +T T+ V + V ++Y K+YI+IF QN + KRK+ FK
Sbjct: 536 WHCERC-EGYNYQVDELSCELCPLDQRPNMNRTGCQLIPIIKLEWH----SPWAVVPVFVAILGIIATTFVIVTFVRYNDTPIVRASGRELSYV-LLTGIFLCYSITFLMIAAPDTIICSFRRVFLGLGMCFSYAALLTKTNRIHRIFEQGKKSVTAPKFISPASQLVITFS---LISVQLLGVFVWFVVDPPHIIIDYGEQRTLDPEKARGVLKCDISDLSLICSLGYSILLMVTCTVYAIKTRGVPETFNEAKPIGFTMYTTCIIWLAFIPIFFGTAQSAEKMYIQTTTLTVSMSLSASVSLGMLYMPKVYIIIFHPEQNVQ-----KRKRSFK 857
The following BLAST results are available for this feature:
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