|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00016309 ID=TCONS_00016309|Name=TCONS_00016309|organism=Clytia hemisphaerica|type=transcript|length=2862bp
ATAAAAACTAAATTAATTTAAAACAATCAAAGTAAATATACTTTTGAAGC
AAgctcggaaaaaaaattcaaggagCAAGACGTAGTATGAGCAATGAAGA
AAGATTCAAAATGTTCTTTCTGTTTATGACCTGCTTGTTGTCGGACTTTG
TCCCACATTGTGTTCACGTACTTTTAACTTAAGTggaaatttgctatata
aatcataTCTCAGAAACGgtgattatgtggtgtgtttttGTATGGTTTAA
CAGCTCTTGATCAAACATTTATTCTGGATAATGGAATTTAATCAAATGAA
GATTTGGACAATTGGACTTTTTCATAGACAGTACATCAAGATGTTTGCTc
ctttatcttttcaaaacatatCTGTCAAACTATTTTGCAATCATAAAGAC
TTTGTACAAGTAGCAAAAGCAGAACAAGAAATCGATGCCAAGTTACTTTG
GACATCCTCTATAACTCCAACACAATGGCACACTAGAATTTCATTGAACA
TTCTTGTAGGGATGAGAGATTCCGGGGTTCCACTTTTCATGGCGTTTCTC
AAAAGTGTTTTCGCGTTGTGTTATACAATCGTTTGAAGTCCAAGAGGTTA
ATCTGTTGAGTTGGCAATGGAAAGTTGAAGAAGCTgtacattgttttttt
cttgggCCCTTGATTTTTAACCTTGAACCAGTGGAAGGATTGACTAGTAG
GGTGATGGAGATTAACGATGAGAAcgattttaatttaaaaaaatgttaat
ataatttttttgaaacttgttTTTGAAATACTTATACCTTCAAAGCCTTT
TTGTGGGATACAAATATTAATCAATCATATGTGAGCTTTCAAAAGTCTAG
caattccatttttttttagatatgCAAAAAGagcaaatttaaaaagaaat
tgaaattaacaATTTGTTAAATGTCGGTCATTCCAACTGGTTATCAAAAT
GAGATTGCTGGTCCAGATAAAAAGCTTTTCGAATGTCCAATTTGTTTGTG
TATCATTCGTAAAGCAACTGAACTTCCCTGTGAACACTTGATGTGTTCTG
ACTGTTTGCTTCACTATGAAAacgaagaaattcaaagaatcaAAAGAGAA
AGGCTCAACAAGAGTGCTACTGTTTATCGATGTTCGATTTGTCAAACTCC
TTATCAAAGAAATAAGAAATACGCAGTGAAATCAGTGGATCGAATCATAC
AAAGAGATATTCCTGTAAATTGTTTACAAAAAGATTGCACTTGGACtggc
tctctgcaagattatgagGTTGCACAAAGAAATTTGAAACAACATAATGA
AACCTTTGGAGATTTTCACCAAACTTTAATTTTGGACAATGTTAAACTTT
TGATGAAGGAAAGAGCTCAAGATCGGGAGAGGATTCAACAACTGCAAAGC
CaactggaaaaaaatgacagacAACTCGGAAATTTATCTAAAGAATTAAA
GAACCAAACTGATCGCCAActgaatttacaaaaaagtttagaacaatACA
ACAAAAGCCTTAAATCAATCGAAAAAGAAATCGACGATATGAAAATAATG
CTCAAAAATCAAACGAAAGAAtattcagaaaaagaaaatgatcgTGTATC
GAGAGACAAAGAATCTTTTATGAAGAAATTAGAAGACCATCGCAACCAAA
TTAAGAAACAATCTAATAAATCACAGcaattagaaaaagaaaatgcaaaT
TTGAGAGAGAAGTTGACAAGTCAAGGTAAAAGGATCCAGCAGCTCGAAGA
GAAGTCTCTTAACCAAGGTAAGAAAGATCTCCATAAAAGCTTGGACGTTC
ATTCTAAAGATATTTCGGAATTGAAGACTTTTGCAGAGCAGATGAGCTCT
TTCCTCCATCGATTATCGTCATGGGAATTCATGAAAGAAAAATTCTATAG
ATTCTTTCGCGAAAACGATTACGAAGATGATATAGGTTTGAAAGAATGGC
GAAATTTCTCGGATAAAGTTCTCTCTAATGAAGAGAATGTGGATTGTGTt
tatttgaaagaaatgaaGGATGCCATCAAAGGGTACAGCCATCACCTCTA
CCCTGGCTGGTACACTCGGTTGAACCTTTTGGCAAATAAACTGGACACTG
GTGTTATTGATCGCCATTATCATCTCAAACTCTACGCACCGTGCCATTTC
GATTTCATATCTGTTAAAGCGTTCAGTGATGTCATCGGTTTTGAGAAGGA
AATCAACAGTTATCATAAATGGTGCAGATATTCAATTGATGTGGCAAGTT
ATCACGACTCTGAAGCAAATTGCTTTCACGTTGCTTTAGTTTGTGTTGGT
GTGAATAATATTAGAATGTTTAATTGGTTTGATGAAGCAGTCGAGATACG
AATTCCTGTCAATGGAAATATTGTTGACTTGAGTCTATTCTCAAATCATT
CTTGTGTAGACGAATGTCGAATGATATTCCAATTAAAAAACATTTCTCCT
TGGgaaaagtttaaagtttttgtCGGCTGATAGATAAACAGTTTCCTCTA
CTTTCTatagggcttttccagaaaaaattcgttcatggggggtggaggat
atattatttttctgtgatttacccctggacatttcgatttttcaccccct
ggacacgtgttttacccctggacaagcatcaagttgaccccctggacaca
aatATTTATCCCTGGACATCGCAgattcaccccatggacattgcagtttt
tcagggttttttcaatacccctggacaatatatcctccaccccccatgaa
tggtttttttctggaagagcccattcgaAACTTAAGGCagaattcgaaaa
taatttgaaaacaaatacaCAAACCGAAaaacgagaagaaaaaaaaacga
aatgaaAAACAA Run BLAST on NCBI transcript from alignment at sc0000232:229782..235500- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00016309 ID=TCONS_00016309|Name=TCONS_00016309|organism=Clytia hemisphaerica|type=transcript|length=5719bp|location=Sequence derived from alignment at sc0000232:229782..235500- (Clytia hemisphaerica)
ATAAAAACTAAATTAATTTAAAACAATCAAAGTAAATATACTTTTGAAGC
AAGCTCGGAAAAAAAATTCAAGGAGCAAGACGTAGTATGAGCAATGAAGA
AAGATTCAAAATGTTCTTTCTGTTTATGACCTGCTTGTTGTCGGACTTTG
TCCCACATTGTGTTCACGTACTTTTAACTTAAGTGGAAATTTGCTATATA
AATCATATCTCAGAAACGGTGATTATGTGGTGTGTTTTTGTATGGTTTAA
CAGCTCTTGATCAAACATTTATTCTGGATAATGGAATTTAATCAAATGAA
GATTTGGACAATTGGACTTTTTCATAGACAGTACATCAAGATGTTTGCTC
CTTTATCTTTTCAAAACATATCTGTCAAACTATTTTGCAATCATAAAGAC
TTTGTACAAGTAGCAAAAGCAGAACAAGAAATCGATGCCAAGTTACTTTG
GACATCCTCTATAACTCCAACACAATGGCACACTAGAATTTCATTGAACA
TTCTTGTAGGGATGAGAGATTCCGGGGTTCCACTTTTCATGGCGTTTCTC
AAAAGTGTTTTCGCGTTGTGTTATACAATCGTTTGAAGTCCAAGAGGTTA
ATCTGTTGAGTTGGCAATGGAAAGTTGAAGAAGCTGTACATTGTTTTTTT
CTTGGGCCCTTGATTTTTAACCTTGAACCAGTGGAAGGATTGACTAGTAG
GGTGATGGAGATTAACGATGAGAACGATTTTAATTTAAAAAAATGTTAAT
ATAATTTTTTTGAAACTTGTTTTTGAAATACTTATACCTTCAAAGCCTTT
TTGTGGGATACAAATATTAATCAATCATATGTGAGCTTTCAAAAGTCTAG
CAATTCCATTTTTTTTTAGATATGCAAAAAGAGCAAATTTAAAAAGAAAT
TGAAATTAACAATTTGTTAAATGTCGGTCATTCCAACTGGTTATCAAAAT
GAGATTGCTGGTCCAGATAAAAAGCTTTTCGAATGTCCAATTTGTTTGTG
TATCATTCGTAAAGCAACTGAACTTCCCTGTGAACACTTGATGTGTTCTG
ACTGTTTGCTTCACTATGAAAACGAAGAAATTCAAAGAATCAAAAGGTAA
AAAAGTTGTTTTACGTACAATTCAATTCCGAAATTTAAACGAAGGCCTGG
CAAATCCAATCCATAAACTTCTTTTTTATTTCAACGTCAATACATAGAGC
TGCTTGCTGTTATTGCAAATTGTTACCCATCATACTAACTATCTGTTCGG
GCAATGCCGTAAAATATTGACGTATTCCTCACAAAATCGGTATAATAGGG
TTAATAATTACTTCAACAAAAATGACCATTCGTTTCAATTCTTACTAAAC
ATATTCAACGTCAAGGCGTTCTAAATTGATGGTCTACATTTATGTAGTTT
TATAAAGAAGACATTCCATTGTCAAATAAAACAATGAACTGGCGTATATC
GCGATTTTTTCTTTTTTAATGATTCGTTTTAACCACTAATCTCGAACTAC
TTGACTGGATCGGGCAACCCGTATATAGGCAGCGTGCCCAGGTTTAGAGC
TGAATGTTTTGAAATTGGAACGTTCGAAAATCTAAGATGGGAAAACAACA
TTGCGGACTAGTCGTAGTCGGCTTCAAAAGTGGACACACTTCCACGGGAA
TTCAGTGAGCAGNGATGGGAAAACAACATTGTGGACTAGTCGTAGTCGGC
TTCAAAAGTGGACACACTTCCACGGGAATTCAGTGAGCAGTCAGCCTATC
TAGTGTGTAAAAGAATATGATATCTGTGTTTTAACAGCTGTAATGTTTTC
GTAACGATTCGGACCTCAATTTAAATATTGTTAATCTGGGCTTTAATTTC
AGAGAAAGGCTCAACAAGAGTGCTACTGTTTATCGATGTTCGATTTGTCA
AACTCCTTATCAAAGAAATAAGGTTAGTGTCTCATTGGATGTAGTTGCGT
TTGCCTGTATTTGTAGTGGTACCTGTCTCTGAAATTACTTTTTGATATTT
TCATTCAAACAACAAGGATTTAACAAAGTAAAACTCTTTGGGAGCGGACG
ATCTTAAAGTCTGTCTCAAAGTTGAATGCAGCAGAGACAAAGTTCTGAAA
CTGTGGAGTGAATCCGAATTAGATATAGACTAGACGGTTACCGTCGTCGC
AAACGCTGCTTCAGCTTTCACATCAAAAGCCCTTAGAATGATAAAGATGG
TACATTTGATCCTCTCTAATTCTATTGCAGAGGCTTCTTCGATTTGAACG
TCAAATCCCTTTTTGGACGGGGGTTTTACCGGAATGAAGTGCTAATTTTT
TCACTCAATCATGTATGAAAAATGAAAGTTTAAACACACAGTTAAAACTT
CGACTTTAAGAACTATGATAAAATTTTGACAAGAGAAAATTCTTCAAAAA
TATCTATTCAATCGAAATTTTATCAATGATTGACTTTGAAAATAATAAAA
AACTAGCCCTTTTCATGTAAACCAGGGAAGGTTTTAAACTGTATTTTTTG
ACTGAATAAATGTATCTTTTGAATTTTTCTTCACATTGATGCAATTGAAC
AATTAGTTTACTAAAATGGTGATCAAAGCATAATTCTGCAAGCATTTAGA
ATTTTTTTTATTTGATAATTTTCATATTCTTAAAATTTATCTTTTCAACC
ATCGCAATTAAGTGTTAGAATTTTATCAAAAGTTACTCCCATTTTAAGAA
ATACGCAGTGAAATCAGTGGATCGAATCATACAAAGAGATATTCCTGTAA
ATTGTTTACAAAAAGATTGCACTTGGACTGGCTCTCTGCAAGATTATGAG
GTATATATAAAAAAACGTATAATTATAAATATATTAGTGCCTTTTTATGT
TTCATCTTTATTTTATTTAGTATTTTCAACACTTTCTCTCCTTGAGGTCA
GATCTCTGATCTTCACCATATATATATATTTTTTTGAAAAGTATGAAATT
AATTTGAAAATGAGCTTACCTACTAGACATGCCCCATTGGGTTGTAAAAA
TATTTTTGATACCGGGTGCGCCACAAAAAAGTTTCTCTCTTTGAAACTGA
TTTTCTCGAAATCTAGAAATTTTAGAAGAACCATTCCTATTTCATTGGAG
AGAAGAAAGATAAACTTAAGTTATGATGGGTCATTTATTGAATTCGGTTC
ATTAGATCGAAAGTTATACTCAATTGATTAAAAAAGTTACTTTCAGAAAG
TGCTCGAAAACGTTAAAAATCGACCTATCAACTTTTCATTTTAAAATTGC
CAATCGCAATAGGCTTTACATGATTAAGAACATTTTTCAGTAATCAAACA
CATAAATTTTGAAACTGATGGGTTCGAAAGGGTTTAAAATCTTCATCAAA
ACCACTTAATTTACTTTTACCGAAATTTTCCTAAGATTTTTGGTACAAGA
ATGGATTTAAAGTCTATGTAAGGCTGGATGTACCTCGAAACCCATATTTG
ATGTATTTTCATGAATTTTACGAGATTTTTGGGTTTTTTCGACGAATTTT
ATTCCTTTCATTGAAATTCGACCTTCCTCTATATTATAACAAAAGGTCAT
TTAGACAGCTAATTATCATTTTTGATGCCTGAAACGAAAATACTGATGCA
TCGTGTAATTATGCTTCTGTTTAATTTGATAGGTCGATTTTTAACGTTTT
TGAGCACTTTCAGAAAATAACTTTTCTATTCAATTGAGTATAACTTTCGA
TCTAATGAACCGAATTCAATAAATGACCCATCATAACTTAAGTTTATCTT
TCTTCTCTCCAATGAAATAGGAATGGTTCTTCTAAAATTTCTAGATTTCG
AGAAAATCAGTTTTAAATAGGGAATCTTTTTTGTGGCGCACCCGGTATAA
GCTTTTGGAAGCTTTTTTGCACTGATTTTTAACCGAAGCAATACTTTTTG
TGCTGATTTTTAACCGGAGCAATACTTTTTAGGAACACAAGTCAATTTGT
TTGGAGAAGGTTCCTTGTCAATATTTTGACCTTGGGTGCTTAGAACTGGT
AATTTTAATTATTCTCTACTTATTAACATTTCGATAGTTTTTTATTTCAC
TTTGTGTAGTGTAAACTTGTGACGGGAAAATTTAAGTAGCTTCTTTAAAC
CGTTTCACCGCTTAATCTTTTATAGGTTGCACAAAGAAATTTGAAACAAC
ATAATGAAACCTTTGGAGATTTTCACCAAACTTTAATTTTGGACAATGTT
AAACTTTTGATGAAGGAAAGAGCTCAAGATCGGGAGAGGATTCAACAACT
GCAAAGCCAACTGGAAAAAAATGACAGACAACTCGGAAATTTATCTAAAG
AATTAAAGAACCAAACTGATCGCCAACTGAATTTACAAAAAAGTTTAGAA
CAATACAACAAAAGCCTTAAATCAATCGAAAAAGAAATCGACGATATGAA
AATAATGCTCAAAAATCAAACGAAAGAATATTCAGAAAAAGAAAATGATC
GTGTATCGAGAGACAAAGAATCTTTTATGAAGAAATTAGAAGACCATCGC
AACCAAATTAAGAAACAATCTAATAAATCACAGCAATTAGAAAAAGAAAA
TGCAAATTTGAGAGAGAAGTTGACAAGTCAAGGTAAAAGGATCCAGCAGC
TCGAAGAGAAGTCTCTTAACCAAGGTAAGAAAGATCTCCATAAAAGCTTG
GACGTTCATTCTAAAGATATTTCGGAATTGAAGACTTTTGCAGAGCAGAT
GAGCTCTTTCCTCCATCGATTATCGTCATGGGAATTCATGAAAGAAAAAT
TCTATAGATTCTTTCGCGAAAACGATTACGAAGATGATATAGGTTTGAAA
GAATGGCGAAATTTCTCGGATAAAGTTCTCTCTAATGAAGAGAATGTGGA
TTGTGTTTATTTGAAAGAAATGAAGGATGCCATCAAAGGGTACAGCCATC
ACCTCTACCCTGGCTGGTACACTCGGTTGAACCTTTTGGCAAATAAACTG
GACACTGGTGTTATTGATCGCCATTATCATCTCAAACTCTACGCACCGTG
CCATTTCGATTTCATATCTGTTAAAGCGTTCAGTGATGTCATCGGTTTTG
AGAAGGAAATCAACAGTTATCATAAATGGTGCAGATATTCAATTGATGTG
GCAAGTTATCACGACTCTGAAGCAAATTGCTTTCACGTTGCTTTAGTTTG
TGTTGGTGTGAATAATATTAGAATGTTTAATTGGTTTGATGAAGCAGTCG
AGATACGAATTCCTGTCAATGGAAATATTGTTGACTTGAGTCTATTCTCA
AATCATTCTTGTGTAGACGAATGTCGAATGATATTCCAATTAAAAAACAT
TTCTCCTTGGGAAAAGTTTAAAGTTTTTGTCGGCTGATAGATAAACAGTT
TCCTCTACTTTCTATAGGGCTTTTCCAGAAAAAATTCGTTCATGGGGGGT
GGAGGATATATTATTTTTCTGTGATTTACCCCTGGACATTTCGATTTTTC
ACCCCCTGGACACGTGTTTTACCCCTGGACAAGCATCAAGTTGACCCCCT
GGACACAAATATTTATCCCTGGACATCGCAGATTCACCCCATGGACATTG
CAGTTTTTCAGGGTTTTTTCAATACCCCTGGACAATATATCCTCCACCCC
CCATGAATGGTTTTTTTCTGGAAGAGCCCATTCGAAACTTAAGGCAGAAT
TCGAAAATAATTTGAAAACAAATACACAAACCGAAAAACGAGAAGAAAAA
AAAACGAAATGAAAAACAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00016309-exon-sc0000232-1575043694:234405..235500 | TCONS_00016309-exon-sc0000232-1575043694:234405..235500 | Clytia hemisphaerica | exon |
| TCONS_00016309-exon-sc0000232-1575043694:233579..233648 | TCONS_00016309-exon-sc0000232-1575043694:233579..233648 | Clytia hemisphaerica | exon |
| TCONS_00016309-exon-sc0000232-1575043694:232701..232802 | TCONS_00016309-exon-sc0000232-1575043694:232701..232802 | Clytia hemisphaerica | exon |
| TCONS_00016309-exon-sc0000232-1575043694:229782..231375 | TCONS_00016309-exon-sc0000232-1575043694:229782..231375 | Clytia hemisphaerica | exon |
| TCONS_00016309-exon-sc0000232-1510915933:234405..235500 | TCONS_00016309-exon-sc0000232-1510915933:234405..235500 | Clytia hemisphaerica | exon |
| TCONS_00016309-exon-sc0000232-1510915933:233579..233648 | TCONS_00016309-exon-sc0000232-1510915933:233579..233648 | Clytia hemisphaerica | exon |
| TCONS_00016309-exon-sc0000232-1510915933:232701..232802 | TCONS_00016309-exon-sc0000232-1510915933:232701..232802 | Clytia hemisphaerica | exon |
| TCONS_00016309-exon-sc0000232-1510915933:229782..231375 | TCONS_00016309-exon-sc0000232-1510915933:229782..231375 | Clytia hemisphaerica | exon |
| TCONS_00016309-exon-sc0000232-1491911889:234405..235500 | TCONS_00016309-exon-sc0000232-1491911889:234405..235500 | Clytia hemisphaerica | exon |
| TCONS_00016309-exon-sc0000232-1491911889:233579..233648 | TCONS_00016309-exon-sc0000232-1491911889:233579..233648 | Clytia hemisphaerica | exon |
| TCONS_00016309-exon-sc0000232-1491911889:232701..232802 | TCONS_00016309-exon-sc0000232-1491911889:232701..232802 | Clytia hemisphaerica | exon |
| TCONS_00016309-exon-sc0000232-1491911889:229782..231375 | TCONS_00016309-exon-sc0000232-1491911889:229782..231375 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000232 | supercontig | sc0000232:229782..235500 - |
Blast
The following BLAST results are available for this feature:
|
