TCONS_00016310 (transcript) - C. hemisphaerica

Overview
NameTCONS_00016310
Unique NameTCONS_00016310
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2941

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00016310 ID=TCONS_00016310|Name=TCONS_00016310|organism=Clytia hemisphaerica|type=transcript|length=2941bp
ATAAAAACTAAATTAATTTAAAACAATCAAAGTAAATATACTTTTGAAGC
AAgctcggaaaaaaaattcaaggagCAAGACGTAGTATGAGCAATGAAGA
AAGATTCAAAATGTTCTTTCTGTTTATGACCTGCTTGTTGTCGGACTTTG
TCCCACATTGTGTTCACGTACTTTTAACTTAAGTggaaatttgctatata
aatcataTCTCAGAAACGgtgattatgtggtgtgtttttGTATGGTTTAA
CAGCTCTTGATCAAACATTTATTCTGGATAATGGAATTTAATCAAATGAA
GATTTGGACAATTGGACTTTTTCATAGACAGTACATCAAGATGTTTGCTc
ctttatcttttcaaaacatatCTGTCAAACTATTTTGCAATCATAAAGAC
TTTGTACAAGTAGCAAAAGCAGAACAAGAAATCGATGCCAAGTTACTTTG
GACATCCTCTATAACTCCAACACAATGGCACACTAGAATTTCATTGAACA
TTCTTGTAGGGATGAGAGATTCCGGGGTTCCACTTTTCATGGCGTTTCTC
AAAAGTGTTTTCGCGTTGTGTTATACAATCGTTTGAAGTCCAAGAGGTTA
ATCTGTTGAGTTGGCAATGGAAAGTTGAAGAAGCTgtacattgttttttt
cttgggCCCTTGATTTTTAACCTTGAACCAGTGGAAGGATTGACTAGTAG
GGTGATGGAGATTAACGATGAGAAcgattttaatttaaaaaaatgttaat
ataatttttttgaaacttgttTTTGAAATACTTATACCTTCAAAGCCTTT
TTGTGGGATACAAATATTAATCAATCATATGTGAGCTTTCAAAAGTCTAG
caattccatttttttttagatatgCAAAAAGagcaaatttaaaaagaaat
tgaaattaacaATTTGTTAAATGTCGGTCATTCCAACTGGTTATCAAAAT
GAGATTGCTGGTCCAGATAAAAAGCTTTTCGAATGTCCAATTTGTTTGTG
TATCATTCGTAAAGCAACTGAACTTCCCTGTGAACACTTGATGTGTTCTG
ACTGTTTGCTTCACTATGAAAacgaagaaattcaaagaatcaAAAGAGAA
AGGCTCAACAAGAGTGCTACTGTTTATCGATGTTCGATTTGTCAAACTCC
TTATCAAAGAAATAAGAAATACGCAGTGAAATCAGTGGATCGAATCATAC
AAAGAGATATTCCTGTAAATTGTTTACAAAAAGATTGCACTTGGACtggc
tctctgcaagattatgagCAATACTTTTTAGGAACACAAGTCAATTTGTT
TGGAGAAGGTTCCTTGTCAATATTTTGACCTTGGGTGCTTAGAACTGGTT
GCACAAAGAAATTTGAAACAACATAATGAAACCTTTGGAGATTTTCACCA
AACTTTAATTTTGGACAATGTTAAACTTTTGATGAAGGAAAGAGCTCAAG
ATCGGGAGAGGATTCAACAACTGCAAAGCCaactggaaaaaaatgacaga
cAACTCGGAAATTTATCTAAAGAATTAAAGAACCAAACTGATCGCCAAct
gaatttacaaaaaagtttagaacaatACAACAAAAGCCTTAAATCAATCG
AAAAAGAAATCGACGATATGAAAATAATGCTCAAAAATCAAACGAAAGAA
tattcagaaaaagaaaatgatcgTGTATCGAGAGACAAAGAATCTTTTAT
GAAGAAATTAGAAGACCATCGCAACCAAATTAAGAAACAATCTAATAAAT
CACAGcaattagaaaaagaaaatgcaaaTTTGAGAGAGAAGTTGACAAGT
CAAGGTAAAAGGATCCAGCAGCTCGAAGAGAAGTCTCTTAACCAAGGTAA
GAAAGATCTCCATAAAAGCTTGGACGTTCATTCTAAAGATATTTCGGAAT
TGAAGACTTTTGCAGAGCAGATGAGCTCTTTCCTCCATCGATTATCGTCA
TGGGAATTCATGAAAGAAAAATTCTATAGATTCTTTCGCGAAAACGATTA
CGAAGATGATATAGGTTTGAAAGAATGGCGAAATTTCTCGGATAAAGTTC
TCTCTAATGAAGAGAATGTGGATTGTGTttatttgaaagaaatgaaGGAT
GCCATCAAAGGGTACAGCCATCACCTCTACCCTGGCTGGTACACTCGGTT
GAACCTTTTGGCAAATAAACTGGACACTGGTGTTATTGATCGCCATTATC
ATCTCAAACTCTACGCACCGTGCCATTTCGATTTCATATCTGTTAAAGCG
TTCAGTGATGTCATCGGTTTTGAGAAGGAAATCAACAGTTATCATAAATG
GTGCAGATATTCAATTGATGTGGCAAGTTATCACGACTCTGAAGCAAATT
GCTTTCACGTTGCTTTAGTTTGTGTTGGTGTGAATAATATTAGAATGTTT
AATTGGTTTGATGAAGCAGTCGAGATACGAATTCCTGTCAATGGAAATAT
TGTTGACTTGAGTCTATTCTCAAATCATTCTTGTGTAGACGAATGTCGAA
TGATATTCCAATTAAAAAACATTTCTCCTTGGgaaaagtttaaagttttt
gtCGGCTGATAGATAAACAGTTTCCTCTACTTTCTatagggcttttccag
aaaaaattcgttcatggggggtggaggatatattatttttctgtgattta
cccctggacatttcgatttttcaccccctggacacgtgttttacccctgg
acaagcatcaagttgaccccctggacacaaatATTTATCCCTGGACATCG
CAgattcaccccatggacattgcagtttttcagggttttttcaatacccc
tggacaatatatcctccaccccccatgaatggtttttttctggaagagcc
cattcgaAACTTAAGGCagaattcgaaaataatttgaaaacaaatacaCA
AACCGAAaaacgagaagaaaaaaaaacgaaatgaaAAACAA
Run BLAST on NCBI

transcript from alignment at sc0000232:229782..235500-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00016310 ID=TCONS_00016310|Name=TCONS_00016310|organism=Clytia hemisphaerica|type=transcript|length=5719bp|location=Sequence derived from alignment at sc0000232:229782..235500- (Clytia hemisphaerica)
ATAAAAACTAAATTAATTTAAAACAATCAAAGTAAATATACTTTTGAAGC
AAGCTCGGAAAAAAAATTCAAGGAGCAAGACGTAGTATGAGCAATGAAGA
AAGATTCAAAATGTTCTTTCTGTTTATGACCTGCTTGTTGTCGGACTTTG
TCCCACATTGTGTTCACGTACTTTTAACTTAAGTGGAAATTTGCTATATA
AATCATATCTCAGAAACGGTGATTATGTGGTGTGTTTTTGTATGGTTTAA
CAGCTCTTGATCAAACATTTATTCTGGATAATGGAATTTAATCAAATGAA
GATTTGGACAATTGGACTTTTTCATAGACAGTACATCAAGATGTTTGCTC
CTTTATCTTTTCAAAACATATCTGTCAAACTATTTTGCAATCATAAAGAC
TTTGTACAAGTAGCAAAAGCAGAACAAGAAATCGATGCCAAGTTACTTTG
GACATCCTCTATAACTCCAACACAATGGCACACTAGAATTTCATTGAACA
TTCTTGTAGGGATGAGAGATTCCGGGGTTCCACTTTTCATGGCGTTTCTC
AAAAGTGTTTTCGCGTTGTGTTATACAATCGTTTGAAGTCCAAGAGGTTA
ATCTGTTGAGTTGGCAATGGAAAGTTGAAGAAGCTGTACATTGTTTTTTT
CTTGGGCCCTTGATTTTTAACCTTGAACCAGTGGAAGGATTGACTAGTAG
GGTGATGGAGATTAACGATGAGAACGATTTTAATTTAAAAAAATGTTAAT
ATAATTTTTTTGAAACTTGTTTTTGAAATACTTATACCTTCAAAGCCTTT
TTGTGGGATACAAATATTAATCAATCATATGTGAGCTTTCAAAAGTCTAG
CAATTCCATTTTTTTTTAGATATGCAAAAAGAGCAAATTTAAAAAGAAAT
TGAAATTAACAATTTGTTAAATGTCGGTCATTCCAACTGGTTATCAAAAT
GAGATTGCTGGTCCAGATAAAAAGCTTTTCGAATGTCCAATTTGTTTGTG
TATCATTCGTAAAGCAACTGAACTTCCCTGTGAACACTTGATGTGTTCTG
ACTGTTTGCTTCACTATGAAAACGAAGAAATTCAAAGAATCAAAAGGTAA
AAAAGTTGTTTTACGTACAATTCAATTCCGAAATTTAAACGAAGGCCTGG
CAAATCCAATCCATAAACTTCTTTTTTATTTCAACGTCAATACATAGAGC
TGCTTGCTGTTATTGCAAATTGTTACCCATCATACTAACTATCTGTTCGG
GCAATGCCGTAAAATATTGACGTATTCCTCACAAAATCGGTATAATAGGG
TTAATAATTACTTCAACAAAAATGACCATTCGTTTCAATTCTTACTAAAC
ATATTCAACGTCAAGGCGTTCTAAATTGATGGTCTACATTTATGTAGTTT
TATAAAGAAGACATTCCATTGTCAAATAAAACAATGAACTGGCGTATATC
GCGATTTTTTCTTTTTTAATGATTCGTTTTAACCACTAATCTCGAACTAC
TTGACTGGATCGGGCAACCCGTATATAGGCAGCGTGCCCAGGTTTAGAGC
TGAATGTTTTGAAATTGGAACGTTCGAAAATCTAAGATGGGAAAACAACA
TTGCGGACTAGTCGTAGTCGGCTTCAAAAGTGGACACACTTCCACGGGAA
TTCAGTGAGCAGNGATGGGAAAACAACATTGTGGACTAGTCGTAGTCGGC
TTCAAAAGTGGACACACTTCCACGGGAATTCAGTGAGCAGTCAGCCTATC
TAGTGTGTAAAAGAATATGATATCTGTGTTTTAACAGCTGTAATGTTTTC
GTAACGATTCGGACCTCAATTTAAATATTGTTAATCTGGGCTTTAATTTC
AGAGAAAGGCTCAACAAGAGTGCTACTGTTTATCGATGTTCGATTTGTCA
AACTCCTTATCAAAGAAATAAGGTTAGTGTCTCATTGGATGTAGTTGCGT
TTGCCTGTATTTGTAGTGGTACCTGTCTCTGAAATTACTTTTTGATATTT
TCATTCAAACAACAAGGATTTAACAAAGTAAAACTCTTTGGGAGCGGACG
ATCTTAAAGTCTGTCTCAAAGTTGAATGCAGCAGAGACAAAGTTCTGAAA
CTGTGGAGTGAATCCGAATTAGATATAGACTAGACGGTTACCGTCGTCGC
AAACGCTGCTTCAGCTTTCACATCAAAAGCCCTTAGAATGATAAAGATGG
TACATTTGATCCTCTCTAATTCTATTGCAGAGGCTTCTTCGATTTGAACG
TCAAATCCCTTTTTGGACGGGGGTTTTACCGGAATGAAGTGCTAATTTTT
TCACTCAATCATGTATGAAAAATGAAAGTTTAAACACACAGTTAAAACTT
CGACTTTAAGAACTATGATAAAATTTTGACAAGAGAAAATTCTTCAAAAA
TATCTATTCAATCGAAATTTTATCAATGATTGACTTTGAAAATAATAAAA
AACTAGCCCTTTTCATGTAAACCAGGGAAGGTTTTAAACTGTATTTTTTG
ACTGAATAAATGTATCTTTTGAATTTTTCTTCACATTGATGCAATTGAAC
AATTAGTTTACTAAAATGGTGATCAAAGCATAATTCTGCAAGCATTTAGA
ATTTTTTTTATTTGATAATTTTCATATTCTTAAAATTTATCTTTTCAACC
ATCGCAATTAAGTGTTAGAATTTTATCAAAAGTTACTCCCATTTTAAGAA
ATACGCAGTGAAATCAGTGGATCGAATCATACAAAGAGATATTCCTGTAA
ATTGTTTACAAAAAGATTGCACTTGGACTGGCTCTCTGCAAGATTATGAG
GTATATATAAAAAAACGTATAATTATAAATATATTAGTGCCTTTTTATGT
TTCATCTTTATTTTATTTAGTATTTTCAACACTTTCTCTCCTTGAGGTCA
GATCTCTGATCTTCACCATATATATATATTTTTTTGAAAAGTATGAAATT
AATTTGAAAATGAGCTTACCTACTAGACATGCCCCATTGGGTTGTAAAAA
TATTTTTGATACCGGGTGCGCCACAAAAAAGTTTCTCTCTTTGAAACTGA
TTTTCTCGAAATCTAGAAATTTTAGAAGAACCATTCCTATTTCATTGGAG
AGAAGAAAGATAAACTTAAGTTATGATGGGTCATTTATTGAATTCGGTTC
ATTAGATCGAAAGTTATACTCAATTGATTAAAAAAGTTACTTTCAGAAAG
TGCTCGAAAACGTTAAAAATCGACCTATCAACTTTTCATTTTAAAATTGC
CAATCGCAATAGGCTTTACATGATTAAGAACATTTTTCAGTAATCAAACA
CATAAATTTTGAAACTGATGGGTTCGAAAGGGTTTAAAATCTTCATCAAA
ACCACTTAATTTACTTTTACCGAAATTTTCCTAAGATTTTTGGTACAAGA
ATGGATTTAAAGTCTATGTAAGGCTGGATGTACCTCGAAACCCATATTTG
ATGTATTTTCATGAATTTTACGAGATTTTTGGGTTTTTTCGACGAATTTT
ATTCCTTTCATTGAAATTCGACCTTCCTCTATATTATAACAAAAGGTCAT
TTAGACAGCTAATTATCATTTTTGATGCCTGAAACGAAAATACTGATGCA
TCGTGTAATTATGCTTCTGTTTAATTTGATAGGTCGATTTTTAACGTTTT
TGAGCACTTTCAGAAAATAACTTTTCTATTCAATTGAGTATAACTTTCGA
TCTAATGAACCGAATTCAATAAATGACCCATCATAACTTAAGTTTATCTT
TCTTCTCTCCAATGAAATAGGAATGGTTCTTCTAAAATTTCTAGATTTCG
AGAAAATCAGTTTTAAATAGGGAATCTTTTTTGTGGCGCACCCGGTATAA
GCTTTTGGAAGCTTTTTTGCACTGATTTTTAACCGAAGCAATACTTTTTG
TGCTGATTTTTAACCGGAGCAATACTTTTTAGGAACACAAGTCAATTTGT
TTGGAGAAGGTTCCTTGTCAATATTTTGACCTTGGGTGCTTAGAACTGGT
AATTTTAATTATTCTCTACTTATTAACATTTCGATAGTTTTTTATTTCAC
TTTGTGTAGTGTAAACTTGTGACGGGAAAATTTAAGTAGCTTCTTTAAAC
CGTTTCACCGCTTAATCTTTTATAGGTTGCACAAAGAAATTTGAAACAAC
ATAATGAAACCTTTGGAGATTTTCACCAAACTTTAATTTTGGACAATGTT
AAACTTTTGATGAAGGAAAGAGCTCAAGATCGGGAGAGGATTCAACAACT
GCAAAGCCAACTGGAAAAAAATGACAGACAACTCGGAAATTTATCTAAAG
AATTAAAGAACCAAACTGATCGCCAACTGAATTTACAAAAAAGTTTAGAA
CAATACAACAAAAGCCTTAAATCAATCGAAAAAGAAATCGACGATATGAA
AATAATGCTCAAAAATCAAACGAAAGAATATTCAGAAAAAGAAAATGATC
GTGTATCGAGAGACAAAGAATCTTTTATGAAGAAATTAGAAGACCATCGC
AACCAAATTAAGAAACAATCTAATAAATCACAGCAATTAGAAAAAGAAAA
TGCAAATTTGAGAGAGAAGTTGACAAGTCAAGGTAAAAGGATCCAGCAGC
TCGAAGAGAAGTCTCTTAACCAAGGTAAGAAAGATCTCCATAAAAGCTTG
GACGTTCATTCTAAAGATATTTCGGAATTGAAGACTTTTGCAGAGCAGAT
GAGCTCTTTCCTCCATCGATTATCGTCATGGGAATTCATGAAAGAAAAAT
TCTATAGATTCTTTCGCGAAAACGATTACGAAGATGATATAGGTTTGAAA
GAATGGCGAAATTTCTCGGATAAAGTTCTCTCTAATGAAGAGAATGTGGA
TTGTGTTTATTTGAAAGAAATGAAGGATGCCATCAAAGGGTACAGCCATC
ACCTCTACCCTGGCTGGTACACTCGGTTGAACCTTTTGGCAAATAAACTG
GACACTGGTGTTATTGATCGCCATTATCATCTCAAACTCTACGCACCGTG
CCATTTCGATTTCATATCTGTTAAAGCGTTCAGTGATGTCATCGGTTTTG
AGAAGGAAATCAACAGTTATCATAAATGGTGCAGATATTCAATTGATGTG
GCAAGTTATCACGACTCTGAAGCAAATTGCTTTCACGTTGCTTTAGTTTG
TGTTGGTGTGAATAATATTAGAATGTTTAATTGGTTTGATGAAGCAGTCG
AGATACGAATTCCTGTCAATGGAAATATTGTTGACTTGAGTCTATTCTCA
AATCATTCTTGTGTAGACGAATGTCGAATGATATTCCAATTAAAAAACAT
TTCTCCTTGGGAAAAGTTTAAAGTTTTTGTCGGCTGATAGATAAACAGTT
TCCTCTACTTTCTATAGGGCTTTTCCAGAAAAAATTCGTTCATGGGGGGT
GGAGGATATATTATTTTTCTGTGATTTACCCCTGGACATTTCGATTTTTC
ACCCCCTGGACACGTGTTTTACCCCTGGACAAGCATCAAGTTGACCCCCT
GGACACAAATATTTATCCCTGGACATCGCAGATTCACCCCATGGACATTG
CAGTTTTTCAGGGTTTTTTCAATACCCCTGGACAATATATCCTCCACCCC
CCATGAATGGTTTTTTTCTGGAAGAGCCCATTCGAAACTTAAGGCAGAAT
TCGAAAATAATTTGAAAACAAATACACAAACCGAAAAACGAGAAGAAAAA
AAAACGAAATGAAAAACAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009098XLOC_009098Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016310-exon-sc0000232-1575043694:234405..235500TCONS_00016310-exon-sc0000232-1575043694:234405..235500Clytia hemisphaericaexon
TCONS_00016310-exon-sc0000232-1575043694:233579..233648TCONS_00016310-exon-sc0000232-1575043694:233579..233648Clytia hemisphaericaexon
TCONS_00016310-exon-sc0000232-1575043694:232701..232802TCONS_00016310-exon-sc0000232-1575043694:232701..232802Clytia hemisphaericaexon
TCONS_00016310-exon-sc0000232-1575043694:231503..231581TCONS_00016310-exon-sc0000232-1575043694:231503..231581Clytia hemisphaericaexon
TCONS_00016310-exon-sc0000232-1575043694:229782..231375TCONS_00016310-exon-sc0000232-1575043694:229782..231375Clytia hemisphaericaexon
TCONS_00016310-exon-sc0000232-1510915933:234405..235500TCONS_00016310-exon-sc0000232-1510915933:234405..235500Clytia hemisphaericaexon
TCONS_00016310-exon-sc0000232-1510915933:233579..233648TCONS_00016310-exon-sc0000232-1510915933:233579..233648Clytia hemisphaericaexon
TCONS_00016310-exon-sc0000232-1510915933:232701..232802TCONS_00016310-exon-sc0000232-1510915933:232701..232802Clytia hemisphaericaexon
TCONS_00016310-exon-sc0000232-1510915933:231503..231581TCONS_00016310-exon-sc0000232-1510915933:231503..231581Clytia hemisphaericaexon
TCONS_00016310-exon-sc0000232-1510915933:229782..231375TCONS_00016310-exon-sc0000232-1510915933:229782..231375Clytia hemisphaericaexon
TCONS_00016310-exon-sc0000232-1491911889:234405..235500TCONS_00016310-exon-sc0000232-1491911889:234405..235500Clytia hemisphaericaexon
TCONS_00016310-exon-sc0000232-1491911889:233579..233648TCONS_00016310-exon-sc0000232-1491911889:233579..233648Clytia hemisphaericaexon
TCONS_00016310-exon-sc0000232-1491911889:232701..232802TCONS_00016310-exon-sc0000232-1491911889:232701..232802Clytia hemisphaericaexon
TCONS_00016310-exon-sc0000232-1491911889:231503..231581TCONS_00016310-exon-sc0000232-1491911889:231503..231581Clytia hemisphaericaexon
TCONS_00016310-exon-sc0000232-1491911889:229782..231375TCONS_00016310-exon-sc0000232-1491911889:229782..231375Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000232supercontigsc0000232:229782..235500 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.00973786	0.0122847	0.00219511	0.00156459	0.00236999	2.6056e-10	0.00292835	1.57151e-08	1.15341e-07	4.0086e-10	0.00657282	1.69726e-05	9.35273e-10	0.000855391	0.0023897	0.00152419	0.00512098	0.0042101	0.00352114	0	0.00141408	0.00206891	0.0154661	0.00617342	0	0	0.0020114	0	0.00732418	0.0181891
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00016310 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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