TCONS_00016311 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00016311
Unique Name	TCONS_00016311
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1887

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000232:239969..245759-

transcript sequence

>TCONS_00016311 ID=TCONS_00016311|Name=TCONS_00016311|organism=Clytia hemisphaerica|type=transcript|length=1887bp
ANCCTGTATGTGGGTGTTGACGATGATAAAGAAACTTCTACTGCTGAAGG
AATTGAACAAGGATACATCGTGGTACCAGTGGACAAGCGATTCCTTCTTC
TCTTCACCTTCTTGAAGAAGAACCGAAAGAAGAAAGTCATGGTCTTTTTC
TCTTCTTGCAATTCCGTCAAATACCATGCTGAACTACTCAACTATATCGA
CATCCCTGTACTCGACATCCACGGtcgacaaaaacaacaaaaacggaCGA
GCACGTTTTTCGAGTTTTGTACAGCGGAGAGTGGGATCCTACTCTGCACG
GATGTGGCCGCACGTGGTCTGGATATTCCGGAAGTTGATTGGATCGTTCA
GTTCGATCCACCAGATGATCCAAAGGAATACATTCACCGTGTAGGGAGGA
CGGCCCGCGGTTCGGACGGACGGGGTCACGCTTTACTCTTCCTTTTACCT
GAAGAGCTTGGATTCCTCAGATACCTGAAACATGCAAAGGTACCATTGAA
TGAGTATGATTTCTCCAAAGCCAAAATATCCAATATCCAACAACAATTGG
AGAAGTTAATTCAGAAGAATTATTTCTTAAACAAATCAGCCAAAGACGGA
TACAGGTCTTACCTACAAGCGTACGCCTCACACCAACATAAAAATATCTT
CAACGTCGAATCACTGGACTTACAAAAAGTTGGCAAAGGTTTTGGGTTCA
TCACACCACCGGGTGTCAACCTCAGTGTTCACACAAGCAAAAGCGgtgaa
aagatgaaaaaaagaaatggcGCATTGAACTACGGGGGAGGCGGTAGCTA
TGGTTACCAGAAGAAAACAAGCAAACATGGCGGATTCGACAagaagaaaa
acttttcaaGGTGACATCATTTTTAAATTGTGTGatctttgtgaaatatt
tttttattatttttggtgATAGACTCATGCCAATAAAATAAAGACGATTT
TAATAATGTCTAAAAGACAAAAGGTGAATGTCGTTCAATTTTATGTTTCG
AAAGACCTGTAGATAGGAAAAAAAGATGGAAACAAAGAAGGGAAAAATTA
TAAGCTATTTAAATTATGATTTAGTTCATCTTTGCTCGTTTTAAAGCCAT
TCCAGTTTAGTGTGTGCAAATAGCGAATAGCTAGTCCGCTTTCTTCCGCT
CGAATAACCATAGAAATATGTGGAGGCAGTTTGAACCACTTTCTGCATTG
ACGTCACCAAGTTATCTTTCCCGTTCTGTTGGTTGGAAGTGCGGAAGTAC
TGATGACCTGTGTTCAGTAACACTTTCTGCTTCAGACTCAATCTTTTAAC
GGTGTATACCAGACACGAATACGGCCCTTTGATATTGTGCACATTTTCAC
AGCATGCGTCTAGTTGCGGAGTGCCGCAGTATTCGAAAAGCACTGGGATA
CATTTCAGTGTCTTTTGCCCCAATACAACACCATAGCCTTGTCGCCGAGC
TTTCCCATCTTCTCCCACACACTCGTTGTCCTTGAGATGTTGAAATTTAC
TGCCCATCACCCTGACTAAGCTGTGAGGTATGTGTAAACAGCCGGTAGAT
TGCCGACTGATAAGTTTACTTTGGACGACACCATGAAGACATACTTTGTA
GAGAATACTTGAAGAATATCTGGTGATCCCGATCACTCCCCCGTGATTCC
AACAATTCTGCGCTGTAGTGCTTTGAACGAGCAATGCCAGTACGATGGTT
ATGATCACTTCATGCAAAATCATGGCTTTTTATCacactttcttcttttc
aaaaatgatttttacttcATAGAGCGCTACTCGTACTCATTTTATACCCC
ATTAAAAGGATCTCAATATCTCAAACCTTTCCTGTCTTATATGACAATTG
ATTGATTGCTCTTATAATGAAACGGCTGTCCACTATC

Run BLAST on NCBI

transcript from alignment at sc0000232:239969..245759-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00016311 ID=TCONS_00016311|Name=TCONS_00016311|organism=Clytia hemisphaerica|type=transcript|length=5791bp|location=Sequence derived from alignment at sc0000232:239969..245759- (Clytia hemisphaerica)
ANCCTGTATGTGGGTGTTGACGATGATAAAGAAACTTCTACTGCTGAAGG
AATTGAACAAGTAAGGTTTTTAACACAATAAGAAACACATAGTAACTGTG
TTGTTTTTTTCCAATAATGTGGGTTCGATTTTCACATCGTGTGTAACTTC
TTTCAACATCACTGCCAACGCATCACGGATGTTGTTGTGACGATGAATGA
CGTAACCACCGAGGTGACAAGAAAGTGCATGTTCGATGGAGAAGGATGCT
TGACATGCACATTTGACCGGTAGTCTCCTCATCTGTCAACCATACCGCAT
GAAAGTCGCATCGAAGAATTCTTGCTTGTTGGACCTATCCCGGTGGGGTG
GAGGTCCTATAAATTAACCTGTGTTCGTTCGTTCGTTCGTTCGTTCGTCT
GTTACCAACTTTTCTCAGGATTGAATCATAGGAATCTTTTGATTTTTGGT
CCAAAGGTGCGAAACGGTGCAGGCCAAAATGTGACGGAGCCCGATTTCGA
AAAAAAATTTTTGGGGGCAAATTTGGGCCAAAAAACGGCTAAAAAACGGG
TTTTTTGGACTTTGTGAAAAATTGGATCATTAATTTTTTCTGATTTTTTG
CATGAAAGTAGGGTACCATCATAGGTAAAAGATGGCTCAATTAGATTTTT
GCAAAAAAATTTATTTGGCTTAAAAAACGCATGTTTATCTATAAGAATCA
CTATTAATAAGCATACATCAATGTTCTTAGTCAAATTACTCAATTTCTTT
ATGAGATAGATGTTTTTTTTGCTCACAAGGGCTTACTTTTGAAGAATATA
TGTGTTTAGACATGAAATTTTGGTTGCTTGGCGTGTTTTTATAGAAAAAC
TGGCCAAGTTCAATATTTTTTTATAAGCACGCTATCAATTACTTAGGTAT
TAGCTTTTCTCGAGATTGGCTCTTTCATTCTTTAAGACATTTTGCACAAA
GATGCATAACTATAAACCCTTGAATGTGACGGAGCCCAATTTTTGAAGAA
AAAAAAATGTTTTGGGGCAAATTTGGGCCAAAAAACGGCTAAAAAGCGGG
TTTTTTGGACTTTGTGAAAAATTGGATTATTGATTTTTGCTGATTTTTTG
CATGGAAGTAGGGTACCATCATAGGTAAAAGATGGCTCAAGCAGATTTTT
GTAAATAAACTTTTCAGCTCTAAAAACGCATCTTTATCTATAAGAATCAC
TATTAATAAGCATACATCAATGTTCTTAGCCAAATTACTCAATTTTTTGA
TGATATAGATGTCTTTTTATGCTCACGAAGTCTTGAATATGAAAGAATAA
TTTTAAGAGTATGAAATTTTGGTTTCTAAACGTTTTTTTTTATAAGAAAC
AAACGACTAATTTTAATAAATCGTCACTATTTGTGTTCTAAATGGTTGTT
TAACGTTCATGCTCACGTAGATATCAATTATATATGTGTTAAATGCATAA
CCAGGTAGGTCCATAAAAGTATCACTTTGAAATTCTCTTCCCTTAAAGGA
AGAGTCGTCAGCCACGATGAAGCACCCGGACATTTAGCTATTATTGAGTA
ACTGTGTAGTCGGTAAAAAAGTGAAGTTAAGAATTTCTGTCAGCAAATGT
AAACACATTTAGTATCATACCGAAGGAGCTGTAAGCTATACCACAAACTT
TGATTTCCTGTAGAAACTAATGTTCTTGCCACTATTTCCCCAACTTCAGG
GATACATCGTGGTACCAGTGGACAAGCGATTCCTTCTTCTCTTCACCTTC
TTGAAGAAGAACCGAAAGAAGAAAGTCATGGTCTTTTTCTCTTCTTGCAA
TTCCGTCAAATACCATGCTGAACTACTCAACTATATCGACATCCCTGTAC
TCGACATCCACGTAAGTTCAACCAAAAATCTTCATTCGAACGGCGTTAAA
AAATCCATTTTTATATTTCCAGAACTAAATATAAATGTAGTATAACAATG
AATATTGTGCTTTTATCACTATGCATTAGTTGCAATACATTAAAAGGTTA
CACATCTCTTCCTTGGATCGTAAAACGGTCAACACTGCAAAATACGAAAC
AACAAAATCACTCAAAAGACAAGGGAAAAAATCATCAAAACCTCTCCTTG
ATCTAATATTATTTGATATAACCTGGTTAAGCGTTTTTATGTGATTGCTG
TCTTATTTTCACTCAGGGTCGACAAAAACAACAAAAACGGACGAGCACGT
TTTTCGAGTTTTGTACAGCGGAGAGTGGGATCCTACTCTGCACGGATGTG
GCCGCACGTGGTCTGGATATTCCGGAAGTTGATTGGATCGTTCAGTTCGA
TCCACCAGATGATCCAAAGGTACTTTCTTCCTTTTTCCGAACAAAATCTT
CCAAAAACTTTCATACAGTGTAGTCCCCATAACTCGCGCGGGAAACGTAA
ATCTATTTGATTTATTGAGGTTGGTTTATAAGGCATTGTTAACTAAAGGA
ACCAAAAAACTTGTCCAAGTAAAGGAGACATTCGAGTTATAGAGATTCGA
GCTATGAAGACTCCATAGTATTTCCTTTTTTCGAACAAGATCTTGCAAAG
GCTTTCAAATTAACTGTGAACCGTTGTTTTTGCCACTTATTATATACCTC
TGTAATTACCGTAGAGATGTACAATTTGAGAAAAGAAAAAGTAATTGAAA
GGAAGAGTAAGAGAAGTGCAGTAATTAATTCTTCTTTCTTTTCTTGCAGG
AATACATTCACCGTGTAGGGAGGACGGCCCGCGGTTCGGACGGACGGGGT
CACGCTTTACTCTTCCTTTTACCTGAAGAGCTTGGATTCCTCAGATACCT
GAAACATGCAAAGGTTTGTTAAAACTCCCCTTTCATCTTTGCATCAACGT
TCTCGACTTTCGTTACTCTTCTGCGCTAACTGTCTTTCGTAAAAAATATC
TCTGAAAGCTTTTTCCTTCCGCGTGTCCTTACGACTGCTTTCTGCCTCGA
AAGCTACGATTGGTTTTCCGTGTTTTATGACGTCATTTGTCAAGTCTAGC
ATTCCAGACGACTTCTGAAGACATACCAAAAATTAAGCAAAAATAATTGA
ACAAGTGTCATATAAACAAATTTTATCCCGTAATATGGTATTTTCGTATA
ACACCTGTATAACACGGTTATAAACGATTCCAGTTTACGTATTTTTCTTT
ACTTGCGAACTGAAATTTGAAATGACTGTTGGTTTTTATTTTTCATGCAA
ACAGGTACCATTGAATGAGTATGATTTCTCCAAAGCCAAAATATCCAATA
TCCAACAACAAGTAAGTTTATTTTTAGCTCTTCTTATTTTCATTGAGACC
ATGTTCTCACGCTACGATTCCGTTCCGCTCCGAAACCAAATGAAGCCATT
CTGTTGGTTAGAAGTGACGTAAAACTTGAATTCAACCAATAGAATGGCTT
CATTTTGTTTCGGAGCGGAACGGAACCGTAGCGTGTGAATATGGTCTGAG
TGTATGTAACTGTTCCAGTTTTTTAACCTCTTGAATTATAATCACTGACT
TACTTATCGAACTTCTTGTTCAGTAGAGTTTCGAACTTCTATTATTCGTC
AAAGAGAAACTTTCCTAAAATATTTTCTATTATTCGAATGCTTGAAATAT
CCCGTTCGAATTTGAATTAGCGAGAATCAACTGTCTTCGAGATTAGTCTT
GTATTGATAACCAGTTGAGAACGAAATTATTTCTTATTCACTAGTTGGAG
AAGTTAATTCAGAAGAATTATTTCTTAAACAAATCAGCCAAAGACGGATA
CAGGTCTTACCTACAAGCGTACGCCTCACACCAACATAAAAATATCTTCA
ACGTCGAATCACTGGACTTACAAAAAGTTGGCAAAGGTTTTGGGTTCATC
ACACCACCGGGTGTCAACCTCAGTATCCTTTTCATGTTTATAAAAAATGT
AGTCTTTTGGTGTATTTTTCCAATTGAAAATCCATGCCATGAACTAAGTG
TAGCGAGAATAATCTGAGAAGGTTTTAAAATTTTGGAGTCTAAAATGACC
CTTAGATTGGCTAAACACCTATTTCAATTTAAATCTACCTTATCGAGAGA
AAAAAATGTCGAGGGAAAGTGACGAAAATTTCCAGGAGTTAGAAAGTTTT
CCCCGACATTTTATCACCCGACCAAAACTTTTACCCGATTTTTTTCTCCC
AATCAAAATTCAAAGCCAAATTTTTTACGTCTTTATTTACCGAAATTATT
GCTTTAAACGTCGAATTACAAGATCTATTTTCGAGCTAGTAAAGGAAACC
ATTTCATTTGGACATTTTAGTCGGGTGGAAGTGACTAAGTTGTAAATTCG
GTCGGGGAAAAGTAACGAATTTGAAATTTTGGTCGGCCGTTATTTGCTGC
ATTATTTTCATAAATTCCTGATTAAAAGAAAAATACCAGGTTAGCTCAGC
TCCCCAACCGTCTTTTTCGGTGGCCCGCAGCAGCCAACACTTTTCAGCTT
TCATATTGTGGCCTTCGGCTATAACTTAGATTTAGATCAGACGTTATTAT
GCCACGGCTCCCTAAGTCAAATCAAATATAAAAATCTTATTTTCTCTTCC
GAATACATACTACCGAACCTTTATTACATTTGATCCCTTGAGAAGAAGTT
TCCTTAACTCCCACTTCCAACAACAAAGGTGTTCACACAAGCAAAAGCGG
TGAAAAGATGAAAAAAAGAAATGGCGCATTGAACTACGGGGGAGGCGGTA
GCTATGGTTACCAGAAGAAAACAAGCAAACATGGCGGATTCGACAAGAAG
AAAAACTTTTCAAGGTGACATCATTTTTAAATTGTGTGATCTTTGTGAAA
TATTTTTTTATTATTTTTGGTGATAGACTCATGCCAATAAAATAAAGACG
ATTTTAATAATGTCTAAAAGACAAAAGGTGAATGTCGTTCAATTTTATGT
TTCGAAAGACCTGTAGATAGGAAAAAAAGATGGAAACAAAGAAGGGAAAA
ATTATAAGCTATTTAAATTATGATTTAGTTCATCTTTGCTCGTTTTAAAG
CCATTCCAGTTTAGTGTGTGCAAATAGCGAATAGCTAGTCCGCTTTCTTC
CGCTCGAATAACCATAGAAATATGTGGAGGCAGTTTGAACCACTTTCTGC
ATTGACGTCACCAAGTTATCTTTCCCGTTCTGTTGGTTGGAAGTGCGGAA
GTACTGATGACCTGTGTTCAGTAACACTTTCTGCTTCAGACTCAATCTTT
TAACGGTGTATACCAGACACGAATACGGCCCTTTGATATTGTGCACATTT
TCACAGCATGCGTCTAGTTGCGGAGTGCCGCAGTATTCGAAAAGCACTGG
GATACATTTCAGTGTCTTTTGCCCCAATACAACACCATAGCCTTGTCGCC
GAGCTTTCCCATCTTCTCCCACACACTCGTTGTCCTTGAGATGTTGAAAT
TTACTGCCCATCACCCTGACTAAGCTGTGAGGTATGTGTAAACAGCCGGT
AGATTGCCGACTGATAAGTTTACTTTGGACGACACCATGAAGACATACTT
TGTAGAGAATACTTGAAGAATATCTGGTGATCCCGATCACTCCCCCGTGA
TTCCAACAATTCTGCGCTGTAGTGCTTTGAACGAGCAATGCCAGTACGAT
GGTTATGATCACTTCATGCAAAATCATGGCTTTTTATCACACTTTCTTCT
TTTCAAAAATGATTTTTACTTCATAGAGCGCTACTCGTACTCATTTTATA
CCCCATTAAAAGGATCTCAATATCTCAAACCTTTCCTGTCTTATATGACA
ATTGATTGATTGCTCTTATAATGAAACGGCTGTCCACTATC

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_009099	XLOC_009099	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000232	supercontig	sc0000232:239969..245759 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.87519	4.94382	9.46865	8.94991	0	0	0	0	4.30479	4.08074	4.24936	4.57585	6.43085	8.18963	3.84497	4.19028	3.78724	3.97769	4.98958	3.49498	3.61162	2.5553	4.4789	2.88304	0	0	2.31326	3.88127	1.77012	1.96869

Blast

[Close]

BLAST of TCONS_00016311 vs. Swiss-Prot (Human)
Match: DDX18 (ATP-dependent RNA helicase DDX18 OS=Homo sapiens GN=DDX18 PE=1 SV=2)

HSP 1 Score: 333.569 bits (854), Expect = 4.191e-104
Identity = 182/246 (73.98%), Postives = 216/246 (87.80%), Query Frame = 1

Query:    4 LYVGVDDDKETSTAEGIEQGYIVVPVDXXXXXXXXXXXXXXXXXVMVFFSSCNSVKYHAELLNYIDIPVLDIHGRQKQQKRTSTFFEFCTAESGILLCTDVAARGLDIPEVDWIVQFDPPDDPKEYIHRVGRTARGSDGRGHAXXXXXXXXXXXXRYLKHAKVPLNEYDFSKAKISNIQQQLEKLIQKNYFLNKSAKDGYRSYLQAYASHQHKNIFNVESLDLQKVGKGFGFITPPGVNLSVHTSK 741
            LYVGVDDDK  +T +G+EQGY+V P +KRFLLLFTFLKKNRKKK+MVFFSSC SVKYH ELLNYID+PVL IHG+QKQ KRT+TFF+FC A+SG LLCTDVAARGLDIPEVDWIVQ+DPPDDPKEYIHRVGRTARG +GRGHALL L PEELGFLRYLK +KVPL+E+DFS +KIS+IQ QLEKLI+KNYFL+KSA++ Y+SY++AY SH  K IFNV +L+L +V   FGF  PP V+L+V++++
Sbjct:  384 LYVGVDDDKANATVDGLEQGYVVCPSEKRFLLLFTFLKKNRKKKLMVFFSSCMSVKYHYELLNYIDLPVLAIHGKQKQNKRTTTFFQFCNADSGTLLCTDVAARGLDIPEVDWIVQYDPPDDPKEYIHRVGRTARGLNGRGHALLILRPEELGFLRYLKQSKVPLSEFDFSWSKISDIQSQLEKLIEKNYFLHKSAQEAYKSYIRAYDSHSLKQIFNVNNLNLPQVALSFGFKVPPFVDLNVNSNE 629

The following BLAST results are available for this feature:

BLAST of TCONS_00016311 vs. Swiss-Prot (Human)

BLAST of TCONS_00016311 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
DDX18	4.191e-104	73.98	ATP-dependent RNA helicase DDX18 OS=Homo sapiens G...	[more]

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TCONS_00016311 (transcript) - C. hemisphaerica