|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00016312 ID=TCONS_00016312|Name=TCONS_00016312|organism=Clytia hemisphaerica|type=transcript|length=2976bpRun BLAST on NCBI protein sequence of TCONS_00016312-protein >TCONS_00016312-protein ID=TCONS_00016312-protein|Name=TCONS_00016312-protein|organism=Clytia hemisphaerica|type=polypeptide|length=632bp MKNLQQKKHFKKLAKLQEKRKAKLKEKKLEEKVQEQEQDDEIESESGAEERun BLAST on NCBI transcript from alignment at sc0000232:239969..249607- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00016312 ID=TCONS_00016312|Name=TCONS_00016312|organism=Clytia hemisphaerica|type=transcript|length=9639bp|location=Sequence derived from alignment at sc0000232:239969..249607- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000232:239969..249607- >TCONS_00016312 ID=TCONS_00016312|Name=TCONS_00016312|organism=Clytia hemisphaerica|type=CDS|length=26586bp|location=Sequence derived from alignment at sc0000232:239969..249607- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00016312 vs. Swiss-Prot (Human)
Match: DDX18 (ATP-dependent RNA helicase DDX18 OS=Homo sapiens GN=DDX18 PE=1 SV=2) HSP 1 Score: 659.062 bits (1699), Expect = 0.000e+0 Identity = 331/452 (73.23%), Postives = 401/452 (88.72%), Query Frame = 1
Query: 475 FKSLEQHVCEKTLKAITEDMTFTHMTEIQYRTVMPLLDGRDILGAAKTGSGKTLAFLIPAVELLFKLNFMPRNGTGIIIISPTRELSLQTFGVVRDLMQHHHHTFGIVMGGANRKQEAERLSRGVNLVVATPGRLLDHLQNTPGFVFKNLQCLIIDEADRILEIGFEEEMKQIIRILPKKRQTMLFSATQTRKVEDLARLSLKKAPLYVGVDDDKETSTAEGIEQGYIVVPVDXXXXXXXXXXXXXXXXXVMVFFSSCNSVKYHAELLNYIDIPVLDIHGRQKQQKRTSTFFEFCTAESGILLCTDVAARGLDIPEVDWIVQFDPPDDPKEYIHRVGRTARGSDGRGHAXXXXXXXXXXXXRYLKHAKVPLNEYDFSKAKISNIQQQLEKLIQKNYFLNKSAKDGYRSYLQAYASHQHKNIFNVESLDLQKVGKGFGFITPPGVNLSVHTSK 1830
F SL V E TLKAI E M FT+MTEIQ++++ PLL+GRD+L AAKTGSGKTLAFLIPAVEL+ KL FMPRNGTG++I+SPTREL++QTFGV+++LM HH HT+G++MGG+NR EA++L G+N++VATPGRLLDH+QNTPGF++KNLQCL+IDEADRIL++GFEEE+KQII++LP +RQTMLFSATQTRKVEDLAR+SLKK PLYVGVDDDK +T +G+EQGY+V P +KRFLLLFTFLKKNRKKK+MVFFSSC SVKYH ELLNYID+PVL IHG+QKQ KRT+TFF+FC A+SG LLCTDVAARGLDIPEVDWIVQ+DPPDDPKEYIHRVGRTARG +GRGHALL L PEELGFLRYLK +KVPL+E+DFS +KIS+IQ QLEKLI+KNYFL+KSA++ Y+SY++AY SH K IFNV +L+L +V FGF PP V+L+V++++
Sbjct: 179 FASLCNLVNENTLKAIKE-MGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPTRRQTMLFSATQTRKVEDLARISLKKEPLYVGVDDDKANATVDGLEQGYVVCPSEKRFLLLFTFLKKNRKKKLMVFFSSCMSVKYHYELLNYIDLPVLAIHGKQKQNKRTTTFFQFCNADSGTLLCTDVAARGLDIPEVDWIVQYDPPDDPKEYIHRVGRTARGLNGRGHALLILRPEELGFLRYLKQSKVPLSEFDFSWSKISDIQSQLEKLIEKNYFLHKSAQEAYKSYIRAYDSHSLKQIFNVNNLNLPQVALSFGFKVPPFVDLNVNSNE 629 The following BLAST results are available for this feature:
BLAST of TCONS_00016312 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2025, MARIMBA.