TCONS_00016317 (transcript) - C. hemisphaerica

Overview
NameTCONS_00016317
Unique NameTCONS_00016317
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2844

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00016317 ID=TCONS_00016317|Name=TCONS_00016317|organism=Clytia hemisphaerica|type=transcript|length=2844bp
AcaggattttctttttcaatcttTTATTCAGAGATTATACCCCGTCTCGC
AATCTCGCTCCCTCATTCAAATTTTACCGAACTCCGTTTTACATCCAAAT
TCGTGTTATTGTGGATAGTAATGAAAACGGAATCTGTCGAATCTGTATCA
ATTTAGCCCCAATTTCTCCGAAAAAGTTCCAAAACAAACATGGCTGCTTC
GTACGCACGTTGTGCCCATGTGTTTAGAAATATCCagttcaaaacaaaga
aagatgGGCTGTTACTGAGAAGAATTCAGCTGAGAAGCTGTTCAAGCATC
ACAGGAAGTGTTCCCGAAGATGTTCTCAACAGTAAAGCTGACGAATTCAG
TGGTAAAAGTATTCAAATTTTACATGACCCTGAAGTGAAAACACTTTTGG
AAAGAATGACTGGTCTGAACTTGAATAAGATTTACACTCCAAGGAAGGAA
GCATTGCAGAACCCAATATATAAAGTTATGGAAAAAGAAGAATATGAAAT
GACAGAAAAAGAAAGGATAGAGGAAGGGCAGAGGAGATTACAAATGCCTG
ATCTGATGACCAGACGGAAGCCAATCAATTTTGTTCATTCTCAAGATGAG
CAACTAATCAACCATGACGAGGATGGATCAGATTTCGTTTTCACTGATAT
CTCCGCCTCGAAAAATATCAGGtcgCGCTCAATATTTGTCCGAGAGAATG
ACACAGGCGTTTTGCGCGAAGCGAGTTGGGAGGAACGCGATCGAATGCAA
TTTATGTATTGGCCAAAAGAAGGTCAACATCACGAAATCGTTGAAATGCT
CCAAGACCAACATCTACCTAGAGTGTTCGATCAATTACGTCATGTGGACG
TCTTGGATTTCATAAACATTCAATGTGAACCCGATTCGCCCGATTTCATT
CGTGTGCACGAAAGGGTATACGAAGACTTAGACCAGCGGCAAGAGTACGA
CATTTTACATTCGACACGTCATTTCGGTGGCATGGTTCATCATTATGTCT
CCAAAGACAAAACAACGAAATTCTTCTCCTACCTCGTTCGAAACGGAAGA
ACTGAAGATGCAATGGACTTGTtaaatttgtacaaaatcatcaacccaga
ttctgaattttctatcgAATCAAAAGAACTGGGTGATGAAGATCTCCTCA
AGTATTATGTTCAGTTTCACGGTCTTCACGAGATCTCTGAATATTTGGAT
TCAGCGCCTCAACAAAGTGGAAGTGTTTAAGAAAAGAAGACGTTCATAAA
AGGTATTTCATTACCTTCTGTATTTGACCTTCTAAGCAGAATCTTGCTGT
TCGAACAAGAAAAAGGGACAGTAAATTCACACATGCTCAGATAAATCGAA
ATCAAAATGGAGCTTTTAAATACAGACAATAACTTTACATCTACAAGATT
ACTAAACGTAATATTAAGATAAAACACATCTACAACAATATTAACCGTAT
AtataaagaatatttttgtagaaaaaaagaTGTATTATAATAAAGAATCC
ACAATTAGATGTTCATAAAATTTCCCAAGTCATTTTCTGTTCGTCACTGT
CCGAAATTGGACGTTTAATATTTTGATCGATCTTTTAAAAGCTCTCACCg
ataaaaaaagtccaaaagtCATTCATTAAATATTTGTTTATCGTGTAAAA
TGATTGGCTATGATCGATCGAGAGCTTTGCTAAGCTCAAATTCTATTGTT
TGATTGTTTATTTGAATGTTCAGGCACGAAGACATTTCAATACCTCGATA
GTTTGTTTTTGTCTTCCTTTATTTTTCAAGATTATTTTATCAAGCAAATC
TTTTCAATCTTTCACCCTTATAGCGAGGCTGATTTTCTGCAATCCTCTTC
GAGTTGTTAAAGTATCCCAAAACATAGAGGATAATTGTGATAAAACTCCA
TCAGAATATATTCCATTAAAATTCAAACGAGCACAACTATTGAACCATCC
ACCTCCTTGATTCGTATCTTTGGCGCAATGCATCGGCGCATAATTTTCAT
TATCTTGGTCTCTGGTCGAAAATGATTGACCATCGTGGTACAACCAATCA
TCTTTGGCAGAACTTTCTCCGTCTACAAATGTCCCGCAATGCAATTTATA
TTTAGTGCTTTCATCTTCAATATAGAAACCTTCATAAATTACAAAGGTGT
GTGTACCATCGAATTCTGTGGCTTCAATCCTTAACATGATGTTTGGAGAG
TATTTATTGGTGATCTGATGGATATGTTTCAAACCCAACCAGTATTCACC
ACCAGCTTCTCCAAAACCTTCTTTGTAATCCACCCAATCTCTGTAAAAAT
CCATAGAACCATCAAACCTTCGTTGAAAGGTCGTCCAACCACCCCCGTTT
CTCGTCATGTCGCAAAAGACATTTATCTCGGTGCCGTAAGGATTGATCGT
GTAATTTCCATCCGTTAAGATGGTTAGATTTTGACATAATTCAACTACTT
GCGTCTCTGGAGGTTGAGTTGATGCTTCTTGTTGTATATCTGCCGGTGTC
AATAGCTCGTAAATATTTGTGTTGTTCTTAGCTGTCGTTTCTACATCTTT
GAATTTCATGTAGAAAAATCTACATTGGAACCCAGTCTCCTGTAAGTCTT
CAATTTCCACAATGAAATGCTGTCCAAAGCGTTGCATAAAACATTCAACT
TCACTTTCAACGTCTTGAGTGAAGGAGGGCGACACTCCTTCAGTGTGATG
AATCGATCGTTCTTCTGCTATCTTCTGAAATGTTGAAAAATGCTGCTCCA
TTGTTTGAACCAACCTTGAATTTGCCAAGAGGAATAGGAAGAATAGCCAA
CATAACAAATTCTTATTTGTCGTTTTCTCCATGTTTTCTTCTTA
Run BLAST on NCBI

transcript from alignment at sc0000232:286834..299536-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00016317 ID=TCONS_00016317|Name=TCONS_00016317|organism=Clytia hemisphaerica|type=transcript|length=12703bp|location=Sequence derived from alignment at sc0000232:286834..299536- (Clytia hemisphaerica)
ACAGGATTTTCTTTTTCAATCTTTTATTCAGAGATTATACCCCGTCTCGC
AATCTCGCTCCCTCATTCAAATTTTACCGAACTCCGTTTTACATCCAAAT
TCGTGTTATTGTGGATAGTAATGAAAACGGAATCTGTCGAATCTGTATCA
ATTTAGCCCCAATTTCTCCGAAAAAGTTCCAAAACAAACATGGCTGCTTC
GTACGCACGTTGTGCCCATGTGTTTAGAAATATCCAGTTCAAAACAAAGA
AAGATGGGCTGTTACTGAGAAGAATTCAGCTGAGAAGCTGTTCAAGCATC
ACAGGAAGTGTTCCCGAAGATGTTCTCAACAGTAAAGCTGACGAATTCAG
TGGTAAAAGTATTCAAATTTTACATGACCCTGAAGTGAAAACACTTTTGG
AAAGAATGACTGGTCTGAACTTGAATAAGATTTACACTCCAAGGAAGGAA
GCATTGCAGAACCCAATATATAAAGTTATGGAAAAAGAAGAATATGAAAT
GGTAAGTAGATGTAACATGTAATCCCCTTGGCGTTCCAGCACTTGACTAT
ATTACACTTCCCTAACTTGCTCTAACTTTATTCATCAGGTAGGTCAGACG
AGGATTATACAGTATTTTTGAGCGCAAGTTTAAATATATGCTTAAATAGA
AAACAAATAATAGCAGTTCTGTTTATTCCTCAAACCCCCAGGAAAAGTTT
TTTTGCCGACTTAGCTATTTCCAAATCTCGGAAAAGAACTCCCATAGGAA
TTCCGATACATAACCCGATTGGTTAATTTCGGAACGGCTTCAAGAAAGTC
ATAATGGCAGATAATTTTAAAAGTNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGGTTCCAGCT
ACACTGAAAATAGCCCACTTTCTCGCCAGACTCACTTGCCGAAGAATAAA
GTTTTATATACATTTTATAAATTTCGCTTATGTGCTCTTATATAAGCTCT
TTTGGTGTGCTCTTTTAATTCACTCTATTTGTTTGCTCATTTACTCTTTT
CATTTGCTCATTCACTCTTTTAAGTTGTTGATGCGCTCTATTATTTCCTC
TTTGTATGCACTCTTTTCATGCGCGCTTTGCATGATCAGTTCAGGATTTT
ATCCATTCTGCCAATTATGAGTTTCGTAAATTTCGCGTTCTGTAAACCAG
CTTTTTTCATTTTTTTTGGGCCTAAATTTTTGCCCGAAAATATAGATTTT
TTGGACTTTGTGAAAAATCTGTTCAATAGCTTTTCCTAATTTTTATACAA
AACATGTAAAATTAAATTGTGCTACTGTAAATAAAAAAAAGTTCATTTTT
CGAGAAAAAAAAATTTTGGCACCAACTTGCAAAATTTTAAATTATTCAGC
TTTTGTTTATACATTGCCTTCATTAAACTTTTATTATTTGTTTTATAAAC
AGGTAGGTCCATAAAAGTATCGATTGTTTTTTTGAAGATAAGATACCCTG
GGAACAAGGTTGCGCGAAATAGCACAATCAGTTTTTGCCCCAAAAATGAA
AAGGTTACTTTCCAGAACTTTATTTTGCGCAAGTGATATTTTGCAGGAAC
AAAGAAGCAAACTGAAAGAGCGAATATAGAGAGCGAACTAAAATGCACAT
AAGCGAACAAACATGGCGAATGAGCGAACAGAAAGGGCAAATGAGCGAAC
CGAAAGAGCAAATGAGCGAACCAAAAGAGCCAATAAAAGAGCAAACTGAA
AGAGAGAGCACTTGTAAACGAAAAGAGCAAATGAGCAAACTCAAAGAGCA
AACTGAAAGAAAGAGTGAACAAAAAGAGTGATCCATACTAATGAAAAAAA
GAGCACTTATGGCAGCTATGGCGTTTCATAGGTAGATTCTTATCAACAGT
TTTTTTGGTGGGAAATTTGAAATTTTTAAATTATCAGCCCTGACCATGCT
ATTCATTTTGCCAAAGTATATAAATGCACATAAGCATGAAATTCCGGCTT
GTCTTCTCAGAAATTCAAGTGGCACTTTTAGGCATCACTAGAATGAAAAT
TTAATAATTTTAAAAAGTATCACATTTTAACACTTGTCCAACTCCTAGCA
AGAGAAGCTTGTTAACATGGCATGCAAAAGTCCCAATATAAAAGTATCAT
AATATATCTTGACCGGGGCGATTTGCGCTAAATCTGTACCGTGTCCCGTC
CGAAATCATGAAAAATAAAGTTCATTTTTTAAACATAACTCTACTTTTCT
ATGACAGTCTATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
GAACAGCCTGAAATTGTTTGTATAAAGGCCTTCCTCAAATTAGAATAGAT
CTTAAAAATCTGTATCACCTTTTTCATCTTTTTTCAGGGTGATTTGCACT
AAATCTTTCCTGTCCCGTCCGAAATCATTCTCATAAAAATCTGTTTTATT
TCAAGTTTTGCTAAACTTTTTCTTTCTACATATTATCAGTAAGTATACAA
GTAAATATACTACTATTCCAAATAGAAAATNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNACTCTTTTTGTTCCAGTAGTGGT
TTTAATACAATACCTATTTTTACAGGAAAATTGTCCCGTCCGAAATCAAT
TCCTATTTTCAAGGTTGAAATAAAGGTATAAAAATTTACTTCAATTGGCC
TGTTTGAACATTTTTCTTACCACTACGTCTTGCTAATAACTTCCTGAATG
TTAAACATTCATTTTATTACAAATTGAAACATATTTGAAAAGTTATGATT
TCGGACAGGACAAATGATTTCGGACGGGAGATTTTTTCTAGTACCCCTGG
AATCAAATCTGAAGAGCTTTGAATCTTAGATTTACTCAATTAAAATATGC
TCTATCCTAGATTACAATATTCAGCCATTCGAATCTTTCTACCTTGCAGA
ATTTCAGAAATATTGTCAATCTTATTGTGATTTCGGACGGGACATTTTTT
GGTGTCACTTCCAATCACCAATGCACTGGGACCTATAGAATGTTNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGACACAT
TTCGGTGTCAAAATGGACGTAAACAGAAAATCACTGCTAGAGCAAGATGG
AAAAAAGGTTTCAAAACACTTTTTTTGTAGAAAAACACATGAATAGATTG
CCTATATGGAAAATCAAAATTCCAGGTCAAATACCTTCCTGGAAAGAAAG
TGCTACCATAAAACTGTAGCACTTTTTTGCTAAAAATTGCCAAAACGAGG
AAAAATTGACACAAAATTTATGATTGCAGACTAATGATAGACAGTTAAAA
CATGAAATTTTGCAGAAAGTGTACCATTACCAAGCTGTATCTCATGAAAA
AAGAAAAAAATCATTAACACTTAACCTTAATGAGATATATGCAAAAAATG
ATTTCGGACGGGACGGTACAGATTTAGTGCAAATCGCCCACCGGTGAAAA
AGAATACAGCTATTATATTTTGATTTTTCATATTTTTTATCATAATATAG
TATATAGCCGATAGGGTATCAATTGTTTAGACATACAAATGAAGTGGACA
TCGAAATAGCCAAGCATTGTAAATTATGAAGAGAAAGAAAATCCTCCCAT
CAAAGTATATATGTGATGATACGGCACTTTTTTTTTGCTACAGTAGGATC
ATTATGTCCATAAACACTTATACTGTAGTATGATGATAATTTCTTATGGA
ATCCTTCTCAGATCCTTTTGCGCCTATCAACACTAAAGAAAGAACTAAGA
AACAAGCCGATATTGTAACGACTATCACATACACTTCTGGATATTATATA
GCTGAATCTGGCAGTGACTCACCTATCTGTATACTTGAGAGCCAGGTCAT
ATTAAAAACACTGTCAATTACACTTACCCCAACAGTTATTTATTGATGCG
AAATTCTGTCACTTTTCCCCGACGAAATTATCCTCTAGGAATTCTATATC
TTGCAAACAAGAAGGTTTTACCCAAATAATTTTTATCTTTAAAAAGGTGG
TTTAATTGACCTTTTAATACCTCTGCCTTGAGCTGCGTTACAGTCAGACG
AAGAGGGTGGCCAGTTTTTTTTTCAAAAAGCGCTTTCTCGCTTCCAAATT
GGAACTGTGCGATTGAGCACCTTCTTATAAAAAGATCCACTGTTCATGTG
CAAAGAGCTTCTTAAAACAGAAGGGAGGAAGTTCTTTTAAAAATGTTTTT
TGAAATTGACTTTTGCGTTGACTTTAAGACGATTCTCTTTCCTGGGGCCT
CTTCCTGGGAAAATATTATCTCCTCCACAAGATCACCATTTTATTCTGTT
GTGCTGCTACCAGCATTCCTGAACCAGGTCTTTGGTCCATTGATATTAGT
AGGGGGTTGTATTTCTGTCTTTTAGTCAGAGAGTTGTTGTAATACACTTT
TCTGCTCAGAATTTCATGCTCTTTCAGATGGTATCAATCATTTTCGTTTT
TTTTTGACTTTTGAAAATCAGCTTTTTCTCTACCCCTTATTTTCCCTTGC
AGTTTTGCCTATGGCGTCACTATTTTGGTCATAAAAAGTTTTCCCGGGCC
TAATCCGCGTCCTCCCTCTCAAAAATATCNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNCAGTGGGTTTACCAACTGACGGTATGTGCGGCGAAAAAAATGG
CTTTTAGAATTGCACCCTTACAGTGCAGAAAAAATCGGTGAAATTCATAC
CCTTAAAGTGCATTTTTTTAAATTTTAAACTTTTTTAGAGCAAAAAAAAA
TCAAGATTTTTGAGCAAAAATTTGCAATTTTTCCTAGATTTGCTGAAATT
TCCACCCATACAGTGCATTTATCAAAAGTCCACCCTTANNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCATTTATCAAAAGTCCACC
CTTACAGTGCATTTCTGATATTTTGAAAAACACACCCTTAACCGCCGCAC
ATACCCGTCGGTCTATTTGCCTGACTGCCCCCCCCCCGGATTTTGAACCA
ATGGGTAGTAAGCTGTAAAGCTTGGATTTGAAAATATTCCTAGAAAAGAA
ATAACTATGAGAAAGAAAAGTGCTTGATATTAAAATCTATATTTTGAAAT
CGAATGATAATACGTTCTTTAGGATGAAAATTAAAGTTTTTACTTTTTTT
AAATAAAATCATCATTTTCTTACTAATTCAGACAGAAAAAGAAAGGATAG
AGGAAGGGCAGAGGAGATTACAAATGCCTGATCTGATGACCAGACGGAAG
CCAATCAATTTTGTTCATTCTCAAGATGAGCAACTAATCAACCATGACGA
GGATGGATCAGATTTCGTTTTCACTGATATCTCCGCCTCGAAAAATATCA
GGGTATTGAATTCTATTCCTTAAACATTCTTCCAACTGCTCAAAAGTCAA
AGTTTATGATTTGTGGGGATGGTAGCATCCAGGGGCACCAGCAGCTTATA
TTAACTGGTTACTTTTTTATTTTTCAGTCGCGCTCAATATTTGTCCGAGA
GAATGACACAGGCGTTTTGCGCGAAGCGAGTTGGGAGGAACGCGATCGAA
TGCAATTTATGTATTGGCCAAAAGAAGGTCAACATCACGAAATCGTTGAA
ATGCTCCAAGACCAACATCTACCTGTAAGCAATATTTTCATGAAATGAGG
TATCGTATTTTGTTATTTTATTATATTACTCATTGTCTTGCGGTTTCGAG
GCCTCTCTTCCTCAAGGCTTGTCTATCAAAAGAACTGATTNCTATATTAT
TATATTACTCATTGTCTTGCTGTTTCGAGGCCTCGTGCAGTTTAAATGTG
CCAAAAGTCATTAACATTGTGACAAAGGCGTACAAGCATGAGACTTTGCA
CAATTGTAGTTTAGGGGTCAAAAATTTTTTTCTCCAAAGTATGTCATATT
AATACCGTTGGAAAGCATTTTTCATGCTGGTTTAGAAAAACATCACAACC
CATATCTAAAAATGAAGCCAAAAAATATTATTGCGGAAGGCTTTTTGAAA
AATGCAGAAAAATGAGGTAATTGCTGACGTCAGAGAAAACTCCAGGACCA
CCCAAAGACGTTTATTTTTGTGAAATTCAATAACGCACCTCTCGGGTACT
AGATACGATTAATTAGATCAGATGCAAACTTATGTTACAATAACTTTTCG
AGTATGGTTAGAGTGGGAAATTTTGCCCTTAGAAGTGCTTATCATGGGCA
TGCCCAATGCAACCCATTTAGCCTAAGGCTTTCGAAGGGTCATAAAACCG
CGATATTCAATGTCAATGGAGTCTAACTCTCAACCAAAGCTATCCATTTA
GACATTGAAAGGTCCTCTATTTAATTTGATAGAAATAAACTTTTTTGGGT
GGTCCTTGAATTTTTGCTGACGTCAGCAATTACGTCATTTTTCTTCATTT
TTTTCCAACATAGGAAAATTTGTGTAGTGAGCTATTTGAATAGATTACCG
TGAGTATCACAGCTCAAATTAATATCGACCTGTGAAAAAAACTCATTTTA
GGCACGTTTTGGCCCAAATTTGCCCAAAAAATTATTTTTTCGAAAATCGG
GCTCCATCAGAATTTAAATATTACNAAGCCTTCCTGGATAACTTTTTTTG
GCTTCATTTTCAAATAATGGGTTGTAATGTTTTTCTAAACGAGCATGAGA
AATGCTTTCCGACTGTATGTAACATGACATACTTTGGAGAAAAAGGGTCT
TTTTGGGTCTAAGATTTAAATCCATTTTTGACCCCTAAACTACAATTGTG
CAAAGTCTCATGCTTGTACACCTTTGTGCACAATTTCTACACAATTAGAC
TGTGCTATATCAAAATAACTGATTTTGAATCCTTTCACCAACTAAAAGCC
ATTAGAAATCCATGTTCTCTCAATTGGCCACCACAGATGAGTTTGCCTTC
CTTTTTTTAGAGAGTGTTCGATCAATTACGTCATGTGGACGTCTTGGATT
TCATAAACATTCAATGTGAACCCGATTCGCCCGATTTCATTCGTGTAAGT
CCGAGTGGATGTCCTTAACGGTGTATTATTCATTAGTATGGTCTTATTGT
GCGGAAGCCCTTGTAGTGAAATTTTTATTCGTTTCTTATATGGCGTTGCT
TTCTTGTGATAAGAGATGTTACCCTTCCGACATGCACCCCCATCAATCGA
ATGACCAACAATGATGCCTTTATCGATCGAAAGAATGCACTTAGTTTTAT
ATAGTCAAGCATATTCTAGACGACTTATTCAGATTTCACAGAACACAATA
CACTCTTTCTGCAAGCATAACGTTTATAAGCATACTTAGGCTCAAACTCG
TAAAAAATAAGCATAATGCTAAGCATACCTCCAAGCTGAAATGCAATATA
ACTTGTGCAGCTTTTTTTAAAACGCTGACCTTTTTAGGGTTACTTTTAAA
GCCGTTTTAGCTTTCTTAGACCAAAGAATTTCGCCTGCGGCGCCAAATTA
CAAACAACTAATTTTTTGAGCCGAATCAATGTTCCTACTTTCGAAATTTC
CATGAACCCGAAGAAAATCCACAAAACGAAGTCTAAGCATATAAATAGGA
GCCTCAACCTGATTTTCCCGTATGCTTATAAAAAAAAGAGTGTAGTAGAA
AATAAGCAAAAATTAATGGAAGGGACAAAATTGAAGTCGTCTAGAAACCT
CTGTGCAAGCTATATGTTTCATATTGGCATTGTTATTGTTAATAAAAAAT
TCCATAGGCGGGATAAATTTGAAAGAAAAAATTTTTTATTTACATTACGG
TAAAAATAATACACTTAAAAAAACACACGTTTTTATAAGAACAAACTATA
TAAGACTTTGGTGACCAAAATATTTTAAGAATAAGTTAACAACAGGTTTT
ACTACCTAATCTCAATTCGATCTTTTATGCAGTCCTAATGAAATTTATTC
CCAGTCTCACTTCTAGACAACTCTCTTTTCAGGTGCACGAAAGGGTATAC
GAAGACTTAGACCAGCGGCAAGAGTACGACATTTTACATTCGACACGTCA
TTTCGGTGGCATGGTTCATCATTATGTCTCCAAAGACAAAACAACGAAAT
TCTTCTCCTACCTCGTTCGAAACGGAAGGTACGATACAATTGTTCAGAAA
CTATTATCATATGACGAAAGTAAACTATAAATTAATAAGAACTTTCAACA
GAACACACACATTTTAGATTAGATTTTAAAATGATCAAGATTAATGAAAA
ACGCTAGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNGGGGGGATAAGATTTCATTACAAAAGGGGGGGATGGGTATATA
GGGGGGGGGGATGAAATAAACCTAGGGGGGTTCATACCCCTCTGCAAACT
ATGTCACTTTTTATCCCATTTCCAATCCTTTATCCTTCACGCTATGTTCC
AAACCTTTGTTTTTGTAGCATTCTGAACTCGAAGATGATAAGGCATTTCC
CGTGTTCCATCAAAATTAGTTTAAGACCAATTCAATCTGCCGAGAGTAGC
AGCTAAATCGAAAGTCTTATTCGGAAAAAAACCTTTTTCAAAGTCGAGCG
AGACGGCACAGTCAATCACATTATAAACTTTTCTCCCAATAGACCTTATT
GGAGTTTTTGATTTTTCTAAAAGAGCGATGCATTGTTGGATTATTTCGGA
CGGGGAGGTAATTCTTCAGAGATTTCTATTGTTATACCCCCGAAACAATC
CCACAATGCATCGCTTTTTTAGAAAAATCAAAAACTCCGATAACATCTAC
TTTCTTTCCACAGAACTGAAGATGCAATGGACTTGTTAAATTTGTACAAA
ATCATCAACCCAGATTCTGAATTTTCTATCGAATCAAAAGAACTGGGTGA
TGAAGATCTCCTCAAGGTTCGTAGTTCGTAGAATTTCTTGGCTTTGTTTT
TGTCGCCATCACATATAACGATCCATAATGATCTAATACTTGGCTGTATC
CTCAATTAGTAGAGGAATGGTTTGGCCAGATTAGTTTCCCAAGGTCATAT
CTTGCTGCCTCCTCTATAACCCCTAATTTCTCAATCATTTACTACCTTTT
GGCTTTTTCAGACTCTACTTGGAGCTTTTTTATAGTTTCTCCTCTACTTA
TCAATCAAAGAAATGTTCATATAACAAATGAACTGACAGCCGAGTTTTCT
TTCTCTTACAGTATTATGTTCAGTTTCACGGTCTTCACGAGATCTCTGAA
TATTTGGATTCAGCGCCTCAACAAAGTGGAAGTGTTTAAGAAAAGAAGAC
GTTCATAAAAGGTATTTCATTACCTTCTGTATTTGACCTTCTAAGCAGAA
TCTTGCTGTTCGAACAAGAAAAAGGGACAGTAAATTCACACATGCTCAGA
TAAATCGAAATCAAAATGGAGCTTTTAAATACAGACAATAACTTTACATC
TACAAGATTACTAAACGTAATATTAAGATAAAACACATCTACAACAATAT
TAACCGTATATATAAAGAATATTTTTGTAGAAAAAAAGATGTATTATAAT
AAAGAATCCACAATTAGATGTTCATAAAATTTCCCAAGTCATTTTCTGTT
CGTCACTGTCCGAAATTGGACGTTTAATATTTTGATCGATCTTTTAAAAG
CTCTCACCGATAAAAAAAGTCCAAAAGTCATTCATTAAATATTTGTTTAT
CGTGTAAAATGATTGGCTATGATCGATCGAGAGCTTTGCTAAGCTCAAAT
TCTATTGTTTGATTGTTTATTTGAATGTTCAGGCACGAAGACATTTCAAT
ACCTCGATAGTTTGTTTTTGTCTTCCTTTATTTTTCAAGATTATTTTATC
AAGCAAATCTTTTCAATCTTTCACCCTTATAGCGAGGCTGATTTTCTGCA
ATCCTCTTCGAGTTGTTAAAGTATCCCAAAACATAGAGGATAATTGTGAT
AAAACTCCATCAGAATATATTCCATTAAAATTCAAACGAGCACAACTATT
GAACCATCCACCTCCTTGATTCGTATCTTTGGCGCAATGCATCGGCGCAT
AATTTTCATTATCTTGGTCTCTGGTCGAAAATGATTGACCATCGTGGTAC
AACCAATCATCTTTGGCAGAACTTTCTCCGTCTACAAATGTCCCGCAATG
CAATTTATATTTAGTGCTTTCATCTTCAATATAGAAACCTTCATAAATTA
CAAAGGTGTGTGTACCATCGAATTCTGTGGCTTCAATCCTTAACATGATG
TTTGGAGAGTATTTATTGGTGATCTGATGGATATGTTTCAAACCCAACCA
GTATTCACCACCAGCTTCTCCAAAACCTTCTTTGTAATCCACCCAATCTC
TGTAAAAATCCATAGAACCATCAAACCTTCGTTGAAAGGTCGTCCAACCA
CCCCCGTTTCTCGTCATGTCGCAAAAGACATTTATCTCGGTGCCGTAAGG
ATTGATCGTGTAATTTCCATCCGTTAAGATGGTTAGATTTTGACATAATT
CAACTACTTGCGTCTCTGGAGGTTGAGTTGATGCTTCTTGTTGTATATCT
GCCGGTGTCAATAGCTCGTAAATATTTGTGTTGTTCTTAGCTGTCGTTTC
TACATCTTTGAATTTCATGTAGAAAAATCTACATTGGAACCCAGTCTCCT
GTAAGTCTTCAATTTCCACAATGAAATGCTGTCCAAAGCGTTGCATAAAA
CATTCAACTTCACTTTCAACGTCTTGAGTGAAGGAGGGCGACACTCCTTC
AGTGTGATGAATCGATCGTTCTTCTGCTATCTTCTGAAATGTTGAAAAAT
GCTGCTCCATTGTTTGAACCAACCTTGAATTTGCCAAGAGGAATAGGAAG
AATAGCCAACATAACAAATTCTTATTTGTCGTTTTCTCCATGTTTTCTTC
TTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009100XLOC_009100Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016317-exon-sc0000232-1575043694:299036..299536TCONS_00016317-exon-sc0000232-1575043694:299036..299536Clytia hemisphaericaexon
TCONS_00016317-exon-sc0000232-1575043694:292935..293105TCONS_00016317-exon-sc0000232-1575043694:292935..293105Clytia hemisphaericaexon
TCONS_00016317-exon-sc0000232-1575043694:292663..292809TCONS_00016317-exon-sc0000232-1575043694:292663..292809Clytia hemisphaericaexon
TCONS_00016317-exon-sc0000232-1575043694:291293..291376TCONS_00016317-exon-sc0000232-1575043694:291293..291376Clytia hemisphaericaexon
TCONS_00016317-exon-sc0000232-1575043694:290209..290354TCONS_00016317-exon-sc0000232-1575043694:290209..290354Clytia hemisphaericaexon
TCONS_00016317-exon-sc0000232-1575043694:288821..288923TCONS_00016317-exon-sc0000232-1575043694:288821..288923Clytia hemisphaericaexon
TCONS_00016317-exon-sc0000232-1575043694:286834..288525TCONS_00016317-exon-sc0000232-1575043694:286834..288525Clytia hemisphaericaexon
TCONS_00016317-exon-sc0000232-1510915933:299036..299536TCONS_00016317-exon-sc0000232-1510915933:299036..299536Clytia hemisphaericaexon
TCONS_00016317-exon-sc0000232-1510915933:292935..293105TCONS_00016317-exon-sc0000232-1510915933:292935..293105Clytia hemisphaericaexon
TCONS_00016317-exon-sc0000232-1510915933:292663..292809TCONS_00016317-exon-sc0000232-1510915933:292663..292809Clytia hemisphaericaexon
TCONS_00016317-exon-sc0000232-1510915933:291293..291376TCONS_00016317-exon-sc0000232-1510915933:291293..291376Clytia hemisphaericaexon
TCONS_00016317-exon-sc0000232-1510915933:290209..290354TCONS_00016317-exon-sc0000232-1510915933:290209..290354Clytia hemisphaericaexon
TCONS_00016317-exon-sc0000232-1510915933:288821..288923TCONS_00016317-exon-sc0000232-1510915933:288821..288923Clytia hemisphaericaexon
TCONS_00016317-exon-sc0000232-1510915933:286834..288525TCONS_00016317-exon-sc0000232-1510915933:286834..288525Clytia hemisphaericaexon
TCONS_00016317-exon-sc0000232-1491911889:299036..299536TCONS_00016317-exon-sc0000232-1491911889:299036..299536Clytia hemisphaericaexon
TCONS_00016317-exon-sc0000232-1491911889:292935..293105TCONS_00016317-exon-sc0000232-1491911889:292935..293105Clytia hemisphaericaexon
TCONS_00016317-exon-sc0000232-1491911889:292663..292809TCONS_00016317-exon-sc0000232-1491911889:292663..292809Clytia hemisphaericaexon
TCONS_00016317-exon-sc0000232-1491911889:291293..291376TCONS_00016317-exon-sc0000232-1491911889:291293..291376Clytia hemisphaericaexon
TCONS_00016317-exon-sc0000232-1491911889:290209..290354TCONS_00016317-exon-sc0000232-1491911889:290209..290354Clytia hemisphaericaexon
TCONS_00016317-exon-sc0000232-1491911889:288821..288923TCONS_00016317-exon-sc0000232-1491911889:288821..288923Clytia hemisphaericaexon
TCONS_00016317-exon-sc0000232-1491911889:286834..288525TCONS_00016317-exon-sc0000232-1491911889:286834..288525Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000232supercontigsc0000232:286834..299536 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.46891	0.0513442	3.97597	0.123681	3.75559	0.000800924	2.05474	0.563061	0.0116096	0.0222397	2.30166	0.0303926	0.012475	0.00328545	0.0157592	0.0209695	3.28178	0.025813	0.0189389	0.0263504	0.0137262	2.5315	0.0392597	0.0130494	0.00141916	1.81308	0.0908891	0.0608126	0.0152933	0.0230423
Blast
[Close]
BLAST of TCONS_00016317 vs. Swiss-Prot (Human)
Match: RT22 (28S ribosomal protein S22, mitochondrial OS=Homo sapiens GN=MRPS22 PE=1 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 1.227e-52
Identity = 113/301 (37.54%), Postives = 182/301 (60.47%), Query Frame = 1 
Query:  274 IQLRSCSSITGSVPEDVLNSKADEFSGKSIQ--ILHDPEVKTLLERMTGLNLNKIYTPRKEALQNPIYKVMXXXXXXXXXXXXXXXGQRRLQMPDLMTRRKPINFVHSQDEQLINHDEDGSDFVFTDISASKNIRSRSIFVRENDTGVLREASWEERDRMQFMYWPKEGQHHEIVEMLQDQHLPRVFDQLRHVDVLDFINIQCEPDSPDFIRVHERVYEDLDQRQEYDILHSTRHFGGMVHHYVSKDKTTKFFSYLVRNGRTEDAMDLLNLYKIINPDSEFSIESKELGDE--DLLKYYVQ 1164
            +Q   CS   G +P    +S+A E      +     D EV+++L +MTGLNL K + P  + L+ P YK+M + + E   ++ +E  + RL+MP ++  R PIN V ++D+  I    + + +VFTDIS S   R R I VRE  +G LR+ASWEERDRM  +Y+PKEG+      + ++++L  ++ Q RHVDVL+    Q EPDS ++I+VH + YED+D+R +YD+L STR+FGGMV ++V+  K        ++    +DA +L+ LY +++PD + +  +K+   E  +L+K + +
Sbjct:   37 LQPLPCSFEMG-LPRRRFSSEAAESGSPETKKPTFMDEEVQSILTKMTGLNLQKTFKPAIQELKPPTYKLMTQAQLEEATRQAVEAAKVRLKMPPVLEERVPINDVLAEDK--ILEGTETTKYVFTDISYSIPHRERFIVVRE-PSGTLRKASWEERDRMIQVYFPKEGRKILTPIIFKEENLRTMYSQDRHVDVLNLCFAQFEPDSTEYIKVHHKTYEDIDKRGKYDLLRSTRYFGGMVWYFVNNKKIDGLLIDQIQRDLIDDATNLVQLYHVLHPDGQSAQGAKDQAAEGINLIKVFAK 333
The following BLAST results are available for this feature:
BLAST of TCONS_00016317 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RT221.227e-5237.5428S ribosomal protein S22, mitochondrial OS=Homo s... [more]
back to top