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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00016321 ID=TCONS_00016321|Name=TCONS_00016321|organism=Clytia hemisphaerica|type=transcript|length=1088bp
CACTGAAGATAAGGTACCTGCCCAAATCTATTTTTTACGAGCAGGATAAA
ATGGAATGTGGCATGATGCTTGCTGCCCTAGACCACAACCTTAATATTAA
TAGGGAACAGAAGCAAACGCTCAAAGAGGGAAAATTGGTAAGGCGATTCA
AGATTGCCTACCACAAATACTCTAAATGGTTTGTGGCAAAGCAGGTCAAA
AAGGAGAAATCATACGACTTCCTTCGAGACATTGCTGTTAGGTGCTACCA
CACAGTCGCAGATGGAAATAGGAAGTTCACGACAAAGAGAAAGCGGCTTT
ACGTTACACCTGCTGAAAGGCCTGCTAGAGAAGAAACTATCGAACGCTCT
ACAAAGTTTTCCAGAATGGCAGTGAAAGACAATCAAtagatttcattttg
tttttttatttcatgaaCATTTGTCTAATATAATTCAGCTTTTTTATTCA
TCGAGTTCTTCTTCCTCTTCGACTAATCTCCATGATGACATACGGCTCTC
TGTGGTAGCTACCCCTGCCTTGAATCCTACGTATACACCATCAGGAGCGG
GAAATCGCTCCCTTATAGTTCTTAGCACACAAGCTGGTAATCTTCTGCGG
ACATTCTTTTTTCCTTTGCTATTAGCCCACCAAGTGAAATGTCTATACGC
GGCATATCGATAATTTCTTGTAGTAGCTTTGTCACGTGGAGGCAAGTAAT
CACTGAATAAATCATGTAAACTAACCAAACCCATGTACAGATAAGATTCA
TCAAGAATAAATTTAGTGAAATCAGGATGTTGAGTTGCGCATTTATTTCT
CTCCAAAGCATAATATGGATCGGCTTTCTTAATTATCTCCTCCTCCAAGA
AACCGTAGGCGGTCATAACACCGCATCTATCACATTTACACCAATCATTT
CTTTCAGATCTCCCTATTATTTCTGACTGATCTTGTTGATTTGTCCTATT
TTCTGGTGTAGTCAACGATTTACTAGTGGTAGTCGTTTTCTCCCCGCTTC
GAGTTGGCTGGAACTGAAAACccattattttttaccttccaTTTTCCTag
gataatatttttgacaagGAAAAGTTTTAACCGTTCAC Run BLAST on NCBI protein sequence of TCONS_00016321-protein >TCONS_00016321-protein ID=TCONS_00016321-protein|Name=TCONS_00016321-protein|organism=Clytia hemisphaerica|type=polypeptide|length=193bp
MGFQFQPTRSGEKTTTTSKSLTTPENRTNQQDQSEIIGRSERNDWCKCDR
CGVMTAYGFLEEEIIKKADPYYALERNKCATQHPDFTKFILDESYLYMGL
VSLHDLFSDYLPPRDKATTRNYRYAAYRHFTWWANSKGKKNVRRRLPACV
LRTIRERFPAPDGVYVGFKAGVATTESRMSSWRLVEEEEELDE Run BLAST on NCBI transcript from alignment at sc0000232:5622..6709 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00016321 ID=TCONS_00016321|Name=TCONS_00016321|organism=Clytia hemisphaerica|type=transcript|length=1088bp|location=Sequence derived from alignment at sc0000232:5622..6709 (Clytia hemisphaerica)
GTGAACGGTTAAAACTTTTCcttgtcaaaaatattatcctAGGAAAAtgg
aaggtaaaaaataatggGTTTTCAGTTCCAGCCAACTCGAAGCGGGGAGA
AAACGACTACCACTAGTAAATCGTTGACTACACCAGAAAATAGGACAAAT
CAACAAGATCAGTCAGAAATAATAGGGAGATCTGAAAGAAATGATTGGTG
TAAATGTGATAGATGCGGTGTTATGACCGCCTACGGTTTCTTGGAGGAGG
AGATAATTAAGAAAGCCGATCCATATTATGCTTTGGAGAGAAATAAATGC
GCAACTCAACATCCTGATTTCACTAAATTTATTCTTGATGAATCTTATCT
GTACATGGGTTTGGTTAGTTTACATGATTTATTCAGTGATTACTTGCCTC
CACGTGACAAAGCTACTACAAGAAATTATCGATATGCCGCGTATAGACAT
TTCACTTGGTGGGCTAATAGCAAAGGAAAAAAGAATGTCCGCAGAAGATT
ACCAGCTTGTGTGCTAAGAACTATAAGGGAGCGATTTCCCGCTCCTGATG
GTGTATACGTAGGATTCAAGGCAGGGGTAGCTACCACAGAGAGCCGTATG
TCATCATGGAGATTAGTCGAAGAGGAAGAAGAACTCGATGAATAAAAAAG
CTGAATTATATTAGACAAATGttcatgaaataaaaaaacaaaatgaaatc
taTTGATTGTCTTTCACTGCCATTCTGGAAAACTTTGTAGAGCGTTCGAT
AGTTTCTTCTCTAGCAGGCCTTTCAGCAGGTGTAACGTAAAGCCGCTTTC
TCTTTGTCGTGAACTTCCTATTTCCATCTGCGACTGTGTGGTAGCACCTA
ACAGCAATGTCTCGAAGGAAGTCGTATGATTTCTCCTTTTTGACCTGCTT
TGCCACAAACCATTTAGAGTATTTGTGGTAGGCAATCTTGAATCGCCTTA
CCAATTTTCCCTCTTTGAGCGTTTGCTTCTGTTCCCTATTAATATTAAGG
TTGTGGTCTAGGGCAGCAAGCATCATGCCACATTCCATTTTATCCTGCTC
GTAAAAAATAGATTTGGGCAGGTACCTTATCTTCAGTG Coding sequence (CDS) from alignment at sc0000232:5622..6709 >TCONS_00016321 ID=TCONS_00016321|Name=TCONS_00016321|organism=Clytia hemisphaerica|type=CDS|length=582bp|location=Sequence derived from alignment at sc0000232:5622..6709 (Clytia hemisphaerica)
atggGTTTTCAGTTCCAGCCAACTCGAAGCGGGGAGAAAACGACTACCAC
TAGTAAATCGTTGACTACACCAGAAAATAGGACAAATCAACAAGATCAGT
CAGAAATAATAGGGAGATCTGAAAGAAATGATTGGTGTAAATGTGATAGA
TGCGGTGTTATGACCGCCTACGGTTTCTTGGAGGAGGAGATAATTAAGAA
AGCCGATCCATATTATGCTTTGGAGAGAAATAAATGCGCAACTCAACATC
CTGATTTCACTAAATTTATTCTTGATGAATCTTATCTGTACATGGGTTTG
GTTAGTTTACATGATTTATTCAGTGATTACTTGCCTCCACGTGACAAAGC
TACTACAAGAAATTATCGATATGCCGCGTATAGACATTTCACTTGGTGGG
CTAATAGCAAAGGAAAAAAGAATGTCCGCAGAAGATTACCAGCTTGTGTG
CTAAGAACTATAAGGGAGCGATTTCCCGCTCCTGATGGTGTATACGTAGG
ATTCAAGGCAGGGGTAGCTACCACAGAGAGCCGTATGTCATCATGGAGAT
TAGTCGAAGAGGAAGAAGAACTCGATGAATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00016321-exon-sc0000232-1491911889:5622..6709 | TCONS_00016321-exon-sc0000232-1491911889:5622..6709 | Clytia hemisphaerica | exon |
| TCONS_00016321-exon-sc0000232-1510915933:5622..6709 | TCONS_00016321-exon-sc0000232-1510915933:5622..6709 | Clytia hemisphaerica | exon |
| TCONS_00016321-exon-sc0000232-1575043694:5622..6709 | TCONS_00016321-exon-sc0000232-1575043694:5622..6709 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000232 | supercontig | sc0000232:5622..6709 . |
Blast
The following BLAST results are available for this feature:
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