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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00016328 ID=TCONS_00016328|Name=TCONS_00016328|organism=Clytia hemisphaerica|type=transcript|length=1169bp
ATTTGATTGATTCTTTCTCTCAAAGCAACTGTTTCAAATAATCCAAAATT
ATTTAGGAGGCTTTTTGATTCATCGTTGtacaaaaatttcaagaataaat
CTGCGGAGAAAAGTCGAAATCGAAAAACCAAAGTCAGTTTTAGTTTGATG
AGTTTAAAGAAATGTCTTCAAAAATAACTTCTACAATTTTGTTGTTTGAA
TCATCCGTTTTGGCGCTCATCAATGTTTTGGCAATTTGCGTTATTTTGAG
CACAAAGAATTTACGAAAAACTTTTCACGATGTATTACTGCTAATACTTT
TTTCGCTACATTttgtttttggaattttaaacCTAGTGAAATCGGCTATG
GTTTTGTATAAAGGTGAAAATAAACTTATGGCGTATTTACGCGATTGTGT
TGGTTGCGCTGAAATCACTTTTACATTCATACTTGCCTTGGAGCAATTTG
TAGCTATCCGACAACCTTTTTTTTACGCTCGACTTGAAAAGAAGCATGCA
TTGTTGTACCTATTTATGACTTGTCTAATTCTTATTGCTTTCTGGATATG
GCTGTATTTCTTCAAGATGATATTTTTTCACTGTGACGGCAGCATTGGTG
ATACTGGTcggtgtttttcttttcatagcGAATACATTATTATACAAGTC
GGTCAAGAAACAATGTGAGAAAATCAGTGGTACTATAGTCGCCCGATCCG
AAAACAATAAAACTGCTCGGAGAAATCGATTGAGAAAACGTAGACTTAAA
TCTTTGAAGATTTGTATCGGTATTACGGCTTCTTATCTCTTGACCTGGTT
TCCACTTTCCGTTTTCATTGTGGTTGATTTACATGTAATGTTCAGTAACT
ATCTTGTgtacattttccaaattttcttcttctcgAATGGGATTTGGGAC
GTGGTGGTGTATTTTTACTGCAATAAAAAAGCAAAACGAAGATTGTTGTT
TATGACAATGAAGCCAAAGATTGATATGCAAAACCGGTGAATAGTTAGCA
GAAAGTAGATCTGCCAGCTACGGTgctgcaaggttgtgggttcactCATT
CATTAGGCTGGAAATTTTAGGTTATTTTGTTCAATAACTGCTTATTAAGT
GATAGACCTTCTACATTCTGTAACTTTCGATACTTTtgattctttagaaa
aaaatattatgaaatgatg Run BLAST on NCBI protein sequence of TCONS_00016328-protein >TCONS_00016328-protein ID=TCONS_00016328-protein|Name=TCONS_00016328-protein|organism=Clytia hemisphaerica|type=polypeptide|length=168bp
MSSKITSTILLFESSVLALINVLAICVILSTKNLRKTFHDVLLLILFSLH
FVFGILNLVKSAMVLYKGENKLMAYLRDCVGCAEITFTFILALEQFVAIR
QPFFYARLEKKHALLYLFMTCLILIAFWIWLYFFKMIFFHCDGSIGDTGR
CFSFHSEYIIIQVGQETM Run BLAST on NCBI transcript from alignment at sc0000232:78021..79189 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00016328 ID=TCONS_00016328|Name=TCONS_00016328|organism=Clytia hemisphaerica|type=transcript|length=1169bp|location=Sequence derived from alignment at sc0000232:78021..79189 (Clytia hemisphaerica)
catcatttcataatatttttttctaaagaatcaAAAGTATCGAAAGTTAC
AGAATGTAGAAGGTCTATCACTTAATAAGCAGTTATTGAACAAAATAACC
TAAAATTTCCAGCCTAATGAATGagtgaacccacaaccttgcagcACCGT
AGCTGGCAGATCTACTTTCTGCTAACTATTCACCGGTTTTGCATATCAAT
CTTTGGCTTCATTGTCATAAACAACAATCTTCGTTTTGCTTTTTTATTGC
AGTAAAAATACACCACCACGTCCCAAATCCCATTcgagaagaagaaaatt
tggaaaatgtacACAAGATAGTTACTGAACATTACATGTAAATCAACCAC
AATGAAAACGGAAAGTGGAAACCAGGTCAAGAGATAAGAAGCCGTAATAC
CGATACAAATCTTCAAAGATTTAAGTCTACGTTTTCTCAATCGATTTCTC
CGAGCAGTTTTATTGTTTTCGGATCGGGCGACTATAGTACCACTGATTTT
CTCACATTGTTTCTTGACCGACTTGTATAATAATGTATTCgctatgaaaa
gaaaaacaccgACCAGTATCACCAATGCTGCCGTCACAGTGAAAAAATAT
CATCTTGAAGAAATACAGCCATATCCAGAAAGCAATAAGAATTAGACAAG
TCATAAATAGGTACAACAATGCATGCTTCTTTTCAAGTCGAGCGTAAAAA
AAAGGTTGTCGGATAGCTACAAATTGCTCCAAGGCAAGTATGAATGTAAA
AGTGATTTCAGCGCAACCAACACAATCGCGTAAATACGCCATAAGTTTAT
TTTCACCTTTATACAAAACCATAGCCGATTTCACTAGgtttaaaattcca
aaaacaaAATGTAGCGAAAAAAGTATTAGCAGTAATACATCGTGAAAAGT
TTTTCGTAAATTCTTTGTGCTCAAAATAACGCAAATTGCCAAAACATTGA
TGAGCGCCAAAACGGATGATTCAAACAACAAAATTGTAGAAGTTATTTTT
GAAGACATTTCTTTAAACTCATCAAACTAAAACTGACTTTGGTTTTTCGA
TTTCGACTTTTCTCCGCAGatttattcttgaaatttttgtaCAACGATGA
ATCAAAAAGCCTCCTAAATAATTTTGGATTATTTGAAACAGTTGCTTTGA
GAGAAAGAATCAATCAAAT Coding sequence (CDS) from alignment at sc0000232:78021..79189 >TCONS_00016328 ID=TCONS_00016328|Name=TCONS_00016328|organism=Clytia hemisphaerica|type=CDS|length=507bp|location=Sequence derived from alignment at sc0000232:78021..79189 (Clytia hemisphaerica)
TCACATTGTTTCTTGACCGACTTGTATAATAATGTATTCgctatgaaaag
aaaaacaccgACCAGTATCACCAATGCTGCCGTCACAGTGAAAAAATATC
ATCTTGAAGAAATACAGCCATATCCAGAAAGCAATAAGAATTAGACAAGT
CATAAATAGGTACAACAATGCATGCTTCTTTTCAAGTCGAGCGTAAAAAA
AAGGTTGTCGGATAGCTACAAATTGCTCCAAGGCAAGTATGAATGTAAAA
GTGATTTCAGCGCAACCAACACAATCGCGTAAATACGCCATAAGTTTATT
TTCACCTTTATACAAAACCATAGCCGATTTCACTAGgtttaaaattccaa
aaacaaAATGTAGCGAAAAAAGTATTAGCAGTAATACATCGTGAAAAGTT
TTTCGTAAATTCTTTGTGCTCAAAATAACGCAAATTGCCAAAACATTGAT
GAGCGCCAAAACGGATGATTCAAACAACAAAATTGTAGAAGTTATTTTTG
AAGACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00016328-exon-sc0000232-1491911889:78021..79189 | TCONS_00016328-exon-sc0000232-1491911889:78021..79189 | Clytia hemisphaerica | exon |
| TCONS_00016328-exon-sc0000232-1510915933:78021..79189 | TCONS_00016328-exon-sc0000232-1510915933:78021..79189 | Clytia hemisphaerica | exon |
| TCONS_00016328-exon-sc0000232-1575043694:78021..79189 | TCONS_00016328-exon-sc0000232-1575043694:78021..79189 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000232 | supercontig | sc0000232:78021..79189 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
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