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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00016331 ID=TCONS_00016331|Name=TCONS_00016331|organism=Clytia hemisphaerica|type=transcript|length=1457bp
TTGTCCTAAATTTCTTGCTCAACAAgatttctttcaatacaaatCCTTCA
AATTATGTTTTACAGTTCTAACAGCAACAAATAATGATTATTGATGTTGA
GGAGATACTGGATTTGTCTTTCATCAACccaaacaacatttttgaacAAC
TGCAAGATACTGGTGATTTTTACATTCATCAGAGAGCAGTCAATGCTTGG
AATTTACTTTCAAGGGAAAAGGATTATGACAATGCGTGTGCTCAAAGTCA
AGTTTTGTTGGATAAAACATGGGAACATTTGAATACAGGGTATTGGAAAG
ACGTCAAGTTAGTTTGGAGACATTTGTACACATTGGCATCTCTGATGAAA
ACCTGTAGTTTATACTGTCTCAGTGACACACAGAGTGCTTTAAAAGCTTG
TGATATGGGCTTGTTAATGGGTGCACCTATCTTTGATAACGTTCTTGGTA
AATTAGCTTCAAAATTGtccgaaattttaagaaaaaagaaagatgtCGAT
GATGTTGTGGAacctgtttcaaagaaaataaagggtTGCATAGAATATGG
AAGAGCCAATTATTTACCAACCGATGatgtatcaaaaattgaaaatcgaa
tCCAAGAGAAGTTCTCCATCCCAAAAATTGATAACATATCTCTAATAGAA
TTTCAAGAGAACTATTTAAAGACTGAAACACCTGTTATCATTCAAAATGC
TATGAATCACTGGCCAGCTATGGAAGGTCCGCGAAAGTGGGGGATTGATT
ATTTGAGAACTGTTGCCGGATCAAGGACTGTTCCTGTTGAGATAGGTGAT
AAATATACTTCAGATAATTGGACACAAACTTTAATGAGTGTTAATGACTT
TATTGATAAATACATAGCCAATAGGACAAACACAGGATATTTGGCTCAAC
ATCAGCTTTTTGATCAAGTACCAGAACTAAAAAATGACATTCTGCCACCA
GACTATTGTTATTTAAGTGATTCTGAGGCTGAGAGACCTATTTTAATGCA
TGCATGGTTTGGACCTACAGGCACTGTCTCACCCTTGCATCACGACCCTT
ATCAGAATATCTTAGCTCAAGTAATGGGCTCGAAATATATTAGACTTTAC
AGTCGAGATTCTCCGCATATGTATGCTAACGTTGATTCTATCCTTGATAA
TACCAGCCAAGTGGATCTGGAAAATATTGACCAGGAGAGGTTTCCTGATT
TTCATAGGAACGTTTATCACGAGTGTTTATTGAATGAAGGAGAAATGCTT
TTTATACCTTTCAAGTCgtggcattttgtaaaatctctaTCGACTAGTTT
TTCTGTCAGTTTTTGGTGGAAATAAAATGAATgataaatttgaatttatt
agCAGATCtcatgacaattttatgtaaaATACTAACTATAATAGTCAAAA
TAAACATTGAACAACTTTAAGATTCTGTGCGTAAAAACAGTTTGGAGAAA
CAAAATT Run BLAST on NCBI protein sequence of TCONS_00016331-protein >TCONS_00016331-protein ID=TCONS_00016331-protein|Name=TCONS_00016331-protein|organism=Clytia hemisphaerica|type=polypeptide|length=413bp
MIIDVEEILDLSFINPNNIFEQLQDTGDFYIHQRAVNAWNLLSREKDYDN
ACAQSQVLLDKTWEHLNTGYWKDVKLVWRHLYTLASLMKTCSLYCLSDTQ
SALKACDMGLLMGAPIFDNVLGKLASKLSEILRKKKDVDDVVEPVSKKIK
GCIEYGRANYLPTDDVSKIENRIQEKFSIPKIDNISLIEFQENYLKTETP
VIIQNAMNHWPAMEGPRKWGIDYLRTVAGSRTVPVEIGDKYTSDNWTQTL
MSVNDFIDKYIANRTNTGYLAQHQLFDQVPELKNDILPPDYCYLSDSEAE
RPILMHAWFGPTGTVSPLHHDPYQNILAQVMGSKYIRLYSRDSPHMYANV
DSILDNTSQVDLENIDQERFPDFHRNVYHECLLNEGEMLFIPFKSWHFVK
SLSTSFSVSFWWK Run BLAST on NCBI transcript from alignment at sc0000232:89151..90607 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00016331 ID=TCONS_00016331|Name=TCONS_00016331|organism=Clytia hemisphaerica|type=transcript|length=1457bp|location=Sequence derived from alignment at sc0000232:89151..90607 (Clytia hemisphaerica)
AATTTTGTTTCTCCAAACTGTTTTTACGCACAGAATCTTAAAGTTGTTCA
ATGTTTATTTTGACTATTATAGTTAGTATtttacataaaattgtcatgaG
ATCTGctaataaattcaaatttatcATTCATTTTATTTCCACCAAAAACT
GACAGAAAAACTAGTCGAtagagattttacaaaatgccacGACTTGAAAG
GTATAAAAAGCATTTCTCCTTCATTCAATAAACACTCGTGATAAACGTTC
CTATGAAAATCAGGAAACCTCTCCTGGTCAATATTTTCCAGATCCACTTG
GCTGGTATTATCAAGGATAGAATCAACGTTAGCATACATATGCGGAGAAT
CTCGACTGTAAAGTCTAATATATTTCGAGCCCATTACTTGAGCTAAGATA
TTCTGATAAGGGTCGTGATGCAAGGGTGAGACAGTGCCTGTAGGTCCAAA
CCATGCATGCATTAAAATAGGTCTCTCAGCCTCAGAATCACTTAAATAAC
AATAGTCTGGTGGCAGAATGTCATTTTTTAGTTCTGGTACTTGATCAAAA
AGCTGATGTTGAGCCAAATATCCTGTGTTTGTCCTATTGGCTATGTATTT
ATCAATAAAGTCATTAACACTCATTAAAGTTTGTGTCCAATTATCTGAAG
TATATTTATCACCTATCTCAACAGGAACAGTCCTTGATCCGGCAACAGTT
CTCAAATAATCAATCCCCCACTTTCGCGGACCTTCCATAGCTGGCCAGTG
ATTCATAGCATTTTGAATGATAACAGGTGTTTCAGTCTTTAAATAGTTCT
CTTGAAATTCTATTAGAGATATGTTATCAATTTTTGGGATGGAGAACTTC
TCTTGGattcgattttcaatttttgatacatCATCGGTTGGTAAATAATT
GGCTCTTCCATATTCTATGCAaccctttattttctttgaaacaggtTCCA
CAACATCATCGacatctttcttttttcttaaaatttcggaCAATTTTGAA
GCTAATTTACCAAGAACGTTATCAAAGATAGGTGCACCCATTAACAAGCC
CATATCACAAGCTTTTAAAGCACTCTGTGTGTCACTGAGACAGTATAAAC
TACAGGTTTTCATCAGAGATGCCAATGTGTACAAATGTCTCCAAACTAAC
TTGACGTCTTTCCAATACCCTGTATTCAAATGTTCCCATGTTTTATCCAA
CAAAACTTGACTTTGAGCACACGCATTGTCATAATCCTTTTCCCTTGAAA
GTAAATTCCAAGCATTGACTGCTCTCTGATGAATGTAAAAATCACCAGTA
TCTTGCAGTTgttcaaaaatgttgtttggGTTGATGAAAGACAAATCCAG
TATCTCCTCAACATCAATAATCATTATTTGTTGCTGTTAGAACTGTAAAA
CATAATTTGAAGGatttgtattgaaagaaatcTTGTTGAGCAAGAAATTT
AGGACAA Coding sequence (CDS) from alignment at sc0000232:89151..90607 >TCONS_00016331 ID=TCONS_00016331|Name=TCONS_00016331|organism=Clytia hemisphaerica|type=CDS|length=1242bp|location=Sequence derived from alignment at sc0000232:89151..90607 (Clytia hemisphaerica)
TTATTTCCACCAAAAACTGACAGAAAAACTAGTCGAtagagattttacaa
aatgccacGACTTGAAAGGTATAAAAAGCATTTCTCCTTCATTCAATAAA
CACTCGTGATAAACGTTCCTATGAAAATCAGGAAACCTCTCCTGGTCAAT
ATTTTCCAGATCCACTTGGCTGGTATTATCAAGGATAGAATCAACGTTAG
CATACATATGCGGAGAATCTCGACTGTAAAGTCTAATATATTTCGAGCCC
ATTACTTGAGCTAAGATATTCTGATAAGGGTCGTGATGCAAGGGTGAGAC
AGTGCCTGTAGGTCCAAACCATGCATGCATTAAAATAGGTCTCTCAGCCT
CAGAATCACTTAAATAACAATAGTCTGGTGGCAGAATGTCATTTTTTAGT
TCTGGTACTTGATCAAAAAGCTGATGTTGAGCCAAATATCCTGTGTTTGT
CCTATTGGCTATGTATTTATCAATAAAGTCATTAACACTCATTAAAGTTT
GTGTCCAATTATCTGAAGTATATTTATCACCTATCTCAACAGGAACAGTC
CTTGATCCGGCAACAGTTCTCAAATAATCAATCCCCCACTTTCGCGGACC
TTCCATAGCTGGCCAGTGATTCATAGCATTTTGAATGATAACAGGTGTTT
CAGTCTTTAAATAGTTCTCTTGAAATTCTATTAGAGATATGTTATCAATT
TTTGGGATGGAGAACTTCTCTTGGattcgattttcaatttttgatacatC
ATCGGTTGGTAAATAATTGGCTCTTCCATATTCTATGCAaccctttattt
tctttgaaacaggtTCCACAACATCATCGacatctttcttttttcttaaa
atttcggaCAATTTTGAAGCTAATTTACCAAGAACGTTATCAAAGATAGG
TGCACCCATTAACAAGCCCATATCACAAGCTTTTAAAGCACTCTGTGTGT
CACTGAGACAGTATAAACTACAGGTTTTCATCAGAGATGCCAATGTGTAC
AAATGTCTCCAAACTAACTTGACGTCTTTCCAATACCCTGTATTCAAATG
TTCCCATGTTTTATCCAACAAAACTTGACTTTGAGCACACGCATTGTCAT
AATCCTTTTCCCTTGAAAGTAAATTCCAAGCATTGACTGCTCTCTGATGA
ATGTAAAAATCACCAGTATCTTGCAGTTgttcaaaaatgttgtttggGTT
GATGAAAGACAAATCCAGTATCTCCTCAACATCAATAATCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00016331-exon-sc0000232-1491911889:89151..90607 | TCONS_00016331-exon-sc0000232-1491911889:89151..90607 | Clytia hemisphaerica | exon |
| TCONS_00016331-exon-sc0000232-1510915933:89151..90607 | TCONS_00016331-exon-sc0000232-1510915933:89151..90607 | Clytia hemisphaerica | exon |
| TCONS_00016331-exon-sc0000232-1575043694:89151..90607 | TCONS_00016331-exon-sc0000232-1575043694:89151..90607 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000232 | supercontig | sc0000232:89151..90607 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR003347 | JmjC_dom |
Blast
BLAST of TCONS_00016331 vs. Swiss-Prot (Human)
Match: KDM8 (Lysine-specific demethylase 8 OS=Homo sapiens GN=KDM8 PE=1 SV=1) HSP 1 Score: 338.191 bits (866), Expect = 7.812e-111 Identity = 177/380 (46.58%), Postives = 238/380 (62.63%), Query Frame = 3
Query: 216 EKDYDNACAQSQVLLDKTWEHLNTGYWKDVKLVWRHLYTLASLMKTCSLYCLSD----TQSALKACDMGLLMGAPIFDNVLGKLASKLSEILRXXXXXXXXXEPVSKKIKG------CIEYGRANYLPTDDVSKIENRIQEKFSIPKIDNISLIEFQENYLKTETPVIIQNAMNHWPAMEGPRKWGIDYLRTVAGSRTVPVEIGDKYTSDNWTQTLMSVNDFIDKYIANRT-NTGYLAQHQLFDQVPELKNDILPPDYCYLSDSEAERPILMHAWFGPTGTVSPLHHDPYQNILAQVMGSKYIRLYS-RDSPHMYANVDSILDNTSQVDLENIDQERFPDFHRNVYHECLLNEGEMLFIPFKSWHFVKSLSTSFSVSFWW 1319
E D S+V+LD +WE LNTG W+DV WR +Y + L+K L + +AL+ CDMGLLMGA I ++L K+A+ L L P + +G C + RA++ DV K+E ++P++ SL F+E +L PVI++ +HWP M+ KW ++Y++ +AG RTVPVE+G +YT + W+QTLM+VN+FI KYI N + GYLAQHQLFDQ+PELK DI PDYC L D E E I ++AWFGP GT+SPLH DP QN L QVMG KYIRLYS ++S +Y + +L NTSQVD+EN D E+FP F + + C+L+ GE+LFIP K WH+V++L SFSVSFWW
Sbjct: 58 EGRRDECLQSSEVILDYSWEKLNTGTWQDVDKDWRRVYAIGCLLKALCLCQAPEDANTVAAALRVCDMGLLMGAAILGDILLKVAAILQTHL-----------PGKRPARGSLPEQPCTKKARADHGLIPDV-KLEK------TVPRLHRPSLQHFREQFLVPGRPVILKGVADHWPCMQ---KWSLEYIQEIAGCRTVPVEVGSRYTDEEWSQTLMTVNEFISKYIVNEPRDVGYLAQHQLFDQIPELKQDISIPDYCSLGDGEEEE-ITINAWFGPQGTISPLHQDPQQNFLVQVMGRKYIRLYSPQESGALYPHDTHLLHNTSQVDVENPDLEKFPKFAKAPFLSCILSPGEILFIPVKYWHYVRALDLSFSVSFWW 415
The following BLAST results are available for this feature:
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