TCONS_00016333 (transcript) - C. hemisphaerica

Overview
NameTCONS_00016333
Unique NameTCONS_00016333
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length469

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00016333 ID=TCONS_00016333|Name=TCONS_00016333|organism=Clytia hemisphaerica|type=transcript|length=469bp
CGAGGAAGCTGAATTTGTTGAGAGTTACTTTTATTTCTACGatcagtctt
tttcttatctCCCACCGGATGCGTCGTTTCAACTGTTTGGATCTCTTGTA
TCTTTTTGTCAGGTTTAGTAAGCTTAGGTTCTGCGATCGGGTTTTCAACT
GGAATCATAACTGTTTCATTACTAACAATATCGATGTCTTATAGCTCTGG
AATGGGTACTTGTGGTTGTTCATCTTCATCTGGTACGATAAGTATCTCCT
TTGGTAATGATCCCGACTTTTCCTTATTTGCTTTTGTCAAATGGCATGGA
CTTACTCGTAGAACACTTCCTCCGTGACGCACAACAACAACTTTTCCGTC
AATTCCGATAATGGTAGCTGGACCATGCCAGTCCTTGTCTGAATTTCGTT
TGTAATAGACTGTATCTCCATTATTAAACTCTTTGCTCGTTGTTGTTCGT
GTTTGACGTGATAACGCTG
Run BLAST on NCBI

transcript from alignment at sc0000232:101413..101881

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00016333 ID=TCONS_00016333|Name=TCONS_00016333|organism=Clytia hemisphaerica|type=transcript|length=469bp|location=Sequence derived from alignment at sc0000232:101413..101881 (Clytia hemisphaerica)
CAGCGTTATCACGTCAAACACGAACAACAACGAGCAAAGAGTTTAATAAT
GGAGATACAGTCTATTACAAACGAAATTCAGACAAGGACTGGCATGGTCC
AGCTACCATTATCGGAATTGACGGAAAAGTTGTTGTTGTGCGTCACGGAG
GAAGTGTTCTACGAGTAAGTCCATGCCATTTGACAAAAGCAAATAAGGAA
AAGTCGGGATCATTACCAAAGGAGATACTTATCGTACCAGATGAAGATGA
ACAACCACAAGTACCCATTCCAGAGCTATAAGACATCGATATTGTTAGTA
ATGAAACAGTTATGATTCCAGTTGAAAACCCGATCGCAGAACCTAAGCTT
ACTAAACCTGACAAAAAGATACAAGAGATCCAAACAGTTGAAACGACGCA
TCCGGTGGGagataagaaaaagactgatCGTAGAAATAAAAGTAACTCTC
AACAAATTCAGCTTCCTCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009115XLOC_009115Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016333-exon-sc0000232-1491911889:101413..101881TCONS_00016333-exon-sc0000232-1491911889:101413..101881Clytia hemisphaericaexon
TCONS_00016333-exon-sc0000232-1510915933:101413..101881TCONS_00016333-exon-sc0000232-1510915933:101413..101881Clytia hemisphaericaexon
TCONS_00016333-exon-sc0000232-1575043694:101413..101881TCONS_00016333-exon-sc0000232-1575043694:101413..101881Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000232supercontigsc0000232:101413..101881 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.87536	2.62952	2.33662	2.25994	3.7953	1.94611	0.830309	1.3123	0.584174	2.14476	2.15418	1.97473	1.3823	0.461461	0.933995	1.05755	0.66435	0.429954	1.30297	1.02302	1.35853	0.708835	0	0	3.06449	2.43711	0	0.42833	0	0.533867
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00016333 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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