TCONS_00016361 (transcript) - C. hemisphaerica

Overview
NameTCONS_00016361
Unique NameTCONS_00016361
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1382

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00016361 ID=TCONS_00016361|Name=TCONS_00016361|organism=Clytia hemisphaerica|type=transcript|length=1382bp
CTAGGAAGTGAACCTCATATTACTAGATAGTGGAGAAGAGAATTAAGAAT
ACGAAATGCAGTGAAGTGGAACGGGGCGGCATGGCGTATTGGCGGTGGTC
TGGGTGTAATATAGAGACTATAGTTATCAACTCTGTACAAAAGTCAACGA
TAATTAAAGCGGTCAGCTTATCTGAACAAAGCAATGGCCAAGGTCTTCCA
AGCTAAAGAAGACATTCGTAAATCACAAGATGAAATCGACAGACTTCAAC
CGCTTTTAGAAACTGCTAGATCCATTGCAGAAGATGCTGAAAAAGTCATG
AAGAGTGCTCAAGAGAGTTACCTGACTGTCAAGAAATCTTGTGAAGATCA
ATATACAGAAATTGAACGTTTGAAAATACCTTGTGAACAGTTAAGAAAAG
AAACAAATCAGGATTTTGAGCAGCTAAGTCCACTCTTCCAAGCTGCTTTG
GAGGCGTTAAATATGTTGAGTAAAGGCGATATTGTCGAAATGAAAAGTTA
TCCTGCACCGCCCGAAGGCGTCAAATTAGTCGCCATTCTATTATGCGTCT
TATTTGATGTCCCTGAAAGTTATAAAGAAGCAATTCTTCTTCTTCGGAGT
GACAATTTCATACAACGACTGCAATTCTTGGATAAAGACAACATCTCTGA
CAGTGCTTACCGTAAACTCTGCAAGTTCGTCAACGATCCCGAAACCCAAC
CAACGGTGGTGGCTTCCAAATCCCGTGCAGCTGAACAGCTCTGCTTGTGG
CTACGTGGTATACATAGTTATTGTACCATTTATCGACAGTTGCAACCGAA
GAAGCAGTCACTCAAAGAAGCGGAATTGAAAATTGCCAAGGCTGAATCAA
AGCTTTGCGAAATGAAGTTGCGTACGAGTGACTTGCGTGACTTGCTCGAG
AAGGAGATTGTAAACTACaaagggaaaatgaaaattgtcaAAGGTCTTGA
AAAGAAACAGCAGgattttaggtatgattcgaagacgaaaTACGAAGGCG
AAgagtgaaatatttaatatttttaacaatcagtgattttcgatgaaatt
ttcaacagtttactactgaaaaatgacatttcaatgtaaattttagtcat
tatttactaatttgaagcataagtagtaagccatttttacaaattttggc
gttattaacggccctaattggcgtaagcccaaaattaggctgtggcgtaa
gaagggccggcgttaaattagggtcggcgttaaattagggctgATAAGGT
ATCTGCGTGTCTTGATTTCTTCTGCTAATTGCTTTACTACTTTAAAGCTG
ATGTAATTTTCATTAGGGGTTTTGCATCGTCTGTCCTTTTAATTGTCACT
AATTATTTTACCGTAGTGAAGTGTGTTATTTT
Run BLAST on NCBI

transcript from alignment at sc0000233:119296..123693-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00016361 ID=TCONS_00016361|Name=TCONS_00016361|organism=Clytia hemisphaerica|type=transcript|length=4398bp|location=Sequence derived from alignment at sc0000233:119296..123693- (Clytia hemisphaerica)
CTAGGAAGTGAACCTCATATTACTAGATAGTGGAGAAGAGAATTAAGAAT
ACGAAATGCAGTGAAGTGGAACGGGGCGGCATGGCGTATTGGCGGTGGTC
TGGGTGTAATATAGAGACTATAGTTATCAACTCTGTACAAAAGTCAACGA
TAATTAGTATAAGAGATCTAGTCGAGCTGTTTTGTTTTCTTGCTAATTTT
TGGACCTACCCCGGTGGGGTTGAGGTCCTATAAATTAACCTGTGTTTGTT
CGTCCGTCCGTTCGTCCGTTCGTTCGTTCGTTCGTTCGTTCGTTCGTTCG
TTCGTTCGTTCGTTCGTTCGTTCGTTCGTTCGTTCGTTCGTCTGTTACCA
AAATTTCTCAGGATTGAATCATAGGAATCTTTTGATTTTTGGTACAAAGG
TGCAAAATGGTGGTGGCCAAAATGTGACGGAGCCCGATTTTCAAAAAAAA
AATTTCGAGCCAAATTTCAGCCAAAAAACGGCTAAAAAAAGGGTTTTAAA
GACTTTGTGAAAAATTGGATCATTAATTTTTTCGGAATTTTTTTGCATGA
AAGTAGGCTCACAATCATTGTTAAAAGATGACTTAAGCAGATTTTCACAA
AAAAATTTTTCGGCTCAAAAAACGAATCTTTATCTATAAGAATCGCTATT
TATAAGCATATATTAATGTTCTTGTTTTATATGGTAACAGTCTTGACGAT
TCAATTTAATGTTCGGTTTATTCCTGCTTCATTCCTTTATTCCTTTTATT
TATTCACAGAAGCGGTCAGCTTATCTGAACAAAGCAATGGCCAAGGTCTT
CCAAGCTAAAGAAGACATTCGTAAATCACAAGATGAAATCGACAGACTTC
AACCGCTTTTAGAAACTGCTAGATCCATTGCAGAAGATGCTGAAAAAGTC
ATGAAGAGTGCTCAAGAGAGTTACCTGACTGTCAAGAAATCTTGTGAAGA
TCAATATACAGAAATTGAACGTTTGAAAATACCTTGTGAACAGTTAAGAA
AAGAAACAAATCAGGATTTTGAGCAGGTACCAGCATAGTATATACACCTC
TTACATTTAGGGCGGTTTTGGATTTTGCGAAACCCAAGGCAAGGGGGATG
AGGGAATGTGGAACTTCAAAACTCTATTTCCTGAGAGGGAGCATTGCTTT
TGACAAAGTTTTGTCTTTATCCCTTTAGAAACTATGGTCAACCTATAAAG
ATATTTGAAATTTTAACCGGGGAAACTATTGAAATTGCGAAAAATAACCA
ATATATAAAAAATTTGTTATCAGATTTTTTGCATTTCCCGTCTAAGCAGG
AAAAGTCGAATTTTAAAGCTTCCATTCGAAGTATTTCATTTTCTTGGGCT
CTTTCTATCATTATAAAAACTATTAATGGAAAAAAAAGTCTTCTAAGCTG
AATAATATAAAATTTGTGTTCGGAAAAAACTGGTCACTTTCCGTCGATGT
TTTCCCCCCGATAAGAAATTTCTTTTTCTTATTCTACGCCATTTAGTAGG
GGGCAAATCCTTAAGACCCGTGACATCTTTTATGCGACGCAACCAAACCT
GGTCCATTTCAAAGGATGAAGTATTTAGAGAGTTTTTCGCGAGGGAGGTT
TTCTGCTGAGGCCTAGGAAAATTTTTAAGACCCAAAATCTGACGTCACAG
GCAAAAACCCCTTGACCCCTTAAAATTTCAAAGTCAATAAAACCCAAAAC
CAATTATACCAACCGAAAGCTCTCATAAACGATATATAGAGGACTCTAGT
CGGTTTCCCAACGTAATTCACGATTCTATCAATACGTGGTATAAGCCTTT
GTAATTAAGGCCCTAAAAGCTCTAAATTTTTACTTTTACTTTCTTTTATT
CTATATACTTTCTTCCAGCTAAGTCCACTCTTCCAAGCTGCTTTGGAGGC
GTTAAATATGTTGAGTAAAGGCGATATTGTCGAAATGAAAAGTTATCCTG
CACCGCCCGAAGGCGTCAAATTAGTCGCCATTCTATTATGCGTCTTATTT
GATGTCCCTGAAAGGTATGCGAATGAATTGTTGATTATGTTTTGATTTCA
CTTGTGTAATTCTAATATCAAAGACGGGACCAGATGAGCCAGTTTTATTT
ACTCAAAGGTTCGCTGTTCGCGTTAGGTCTTACTGTATTCAAATTTATGC
TTCTAAGCTTCTTTTGTTTGTTTTTTTATTGCTTTTTAAAAAGAAGTGAT
CTGAAGCTTTTGGATTTGCTTTTTGAGATTCTGAATATTCTTTCGTCGTT
TGCACGTTGTTTTTTTATAAGAACATCCAAAATTTTTGTAGCCTTTAAAA
TGTTCTTAACTTTTTGAGTTTTAAGACTAATAATGTTCTAATTTTCACCA
TTTTTTGAGCAATTTTGTTCATTTTTCTAAGAAATTAGGTGTGTTCGAGT
CCCCAAAGCCTTAAAATGTTCTTAACTTGTTCTTAATATTTTGGCCATCG
AAGCCTTATGTTCTTATATAGTCTGTTCTTATAAAAAACGTGTATTAGAA
AATGAAACATTTTAAAGTCGTTTTTTTTTTCGTCGATAAATTATCTTCCC
TTTCTTCCTTTTTCAAAGTTATAAAGAAGCAATTCTTCTTCTTCGGAGTG
ACAATTTCATACAACGACTGCAATTCTTGGATAAAGACAACATCTCTGAC
AGTGCTTACCGTAAACTCTGCAAGTTCGTCAACGATCCCGAAACCCAACC
AACGGTGGTGGCTTCCAAATCCCGTGCAGCTGAACAGCTCTGCTTGTGGC
TACGTGGTATACATAGTTATTGTACCATTTATCGACAGTTGCAACCGAAG
AAGCAGTCACTCAAAGAAGCGGAATTGAAAATTGCCAAGGTACGAATTCT
TGATATATATAAATGAAGAGACGTCATAATTTCTAGCGAAAGCACCCGAC
AAAAGCCGGATCTCGACCACTGTGTTTCTATTTTTAGTAACAAAGAGGGG
CTAAATCCCGGTTTTTGTTTAAAAAGTCGATTACCGTACTTACCTGGCTG
GAAGTAATGGGAATTCGAGTCCAGGTCATTGCGATGCAAGTCTGTGATCG
ACACCTTCTCATTACCAATCGGTTGGGTACTGACGAGGTATATTAGTTAG
TGAGTCTTCGCTGTTAAGCTAAAATTTATCATAATTTTTAACTTTAACCT
TGAAAAATTTTTCTCCTTTTTAATAGGCTGAATCAAAGCTTTGCGAAATG
AAGTTGCGTACGAGTGACTTGCGTGACTTGCTCGAGAAGGAGATTGTAAA
CTACAAAGGGAAAATGAAAATTGTCAAAGGTCTTGAAAAGAAACAGCAGG
TTTGTATTTCTAATTCATAATATGCACCATTGACCCAACAGCTGATTGGT
TGAAAGTGACGTATTGATTGATTTTACGCCACATTCAACCAATCAGCTAT
TGGGTCCGTGATGTAATGTCAAAAGACATTGAAATGGCTCATATCATGAA
TGCTATTGATGTTTACATATTATTTTTGGAAATATGACGTCTTACTTACC
TACCTTATCGGCCCTTTTTACACCGGCCCTTATTGGCGTTATTTTTGGGC
TCGTGGAGTAATAAGGGCCGGCGTTAAAATGGCTGGCGTAAAAAGGGCAA
AGATTTTGCAATTTTAACCTAAAAGCGGCGTTAATTTTTATCATTATTTC
TCAATTTAAAGGATTTTAGGTATGATTCTAAGACGAAATACGAAGACGAA
GAGTGAAATATTTAATATTTTTAAAAATCAGTGATTATTGATGGAATTTT
CAACAGTTTACTACTGAAAAATGACATTTCAATNGTTGGAAATATGACGT
CTTACCTACCTTAGCGGCCCTTAAACCCCCCCTTTTACACCGGCCCTTAT
TGGCGTTATTTTTGAGCTCGTGGCGTAGTAAGGACCGGCGTTAAAATGGC
TGGCGTAAAAAGGGCCAAGGTTTTGCAATTTTAACCTAAAAGCGGCGTTA
ATTTTTTATCATTATTTCTTGATTTAAAGGATTTTAGGTATGATTCGAAG
ACGAAATACGAAGGCGAAGAGTGAAATATTTAATATTTTTAACAATCAGT
GATTTTCGATGAAATTTTCAACAGTTTACTACTGAAAAATGACATTTCAA
TGTAAATTTTAGTCATTATTTACTAATTTGAAGCATAAGTAGTAAGCCAT
TTTTACAAATTTTGGCGTTATTAACGGCCCTAATTGGCGTAAGCCCAAAA
TTAGGCTGTGGCGTAAGAAGGGCCGGCGTTAAATTAGGGTCGGCGTTAAA
TTAGGGCTGATAAGGTATCTGCGTGTCTTGATTTCTTCTGCTAATTGCTT
TACTACTTTAAAGCTGATGTAATTTTCATTAGGGGTTTTGCATCGTCTGT
CCTTTTAATTGTCACTAATTATTTTACCGTAGTGAAGTGTGTTATTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009136XLOC_009136Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016361-exon-sc0000233-1575043694:123538..123693TCONS_00016361-exon-sc0000233-1575043694:123538..123693Clytia hemisphaericaexon
TCONS_00016361-exon-sc0000233-1575043694:122668..122934TCONS_00016361-exon-sc0000233-1575043694:122668..122934Clytia hemisphaericaexon
TCONS_00016361-exon-sc0000233-1575043694:121680..121825TCONS_00016361-exon-sc0000233-1575043694:121680..121825Clytia hemisphaericaexon
TCONS_00016361-exon-sc0000233-1575043694:120855..121125TCONS_00016361-exon-sc0000233-1575043694:120855..121125Clytia hemisphaericaexon
TCONS_00016361-exon-sc0000233-1575043694:120395..120517TCONS_00016361-exon-sc0000233-1575043694:120395..120517Clytia hemisphaericaexon
TCONS_00016361-exon-sc0000233-1575043694:119296..119714TCONS_00016361-exon-sc0000233-1575043694:119296..119714Clytia hemisphaericaexon
TCONS_00016361-exon-sc0000233-1510915933:123538..123693TCONS_00016361-exon-sc0000233-1510915933:123538..123693Clytia hemisphaericaexon
TCONS_00016361-exon-sc0000233-1510915933:122668..122934TCONS_00016361-exon-sc0000233-1510915933:122668..122934Clytia hemisphaericaexon
TCONS_00016361-exon-sc0000233-1510915933:121680..121825TCONS_00016361-exon-sc0000233-1510915933:121680..121825Clytia hemisphaericaexon
TCONS_00016361-exon-sc0000233-1510915933:120855..121125TCONS_00016361-exon-sc0000233-1510915933:120855..121125Clytia hemisphaericaexon
TCONS_00016361-exon-sc0000233-1510915933:120395..120517TCONS_00016361-exon-sc0000233-1510915933:120395..120517Clytia hemisphaericaexon
TCONS_00016361-exon-sc0000233-1510915933:119296..119714TCONS_00016361-exon-sc0000233-1510915933:119296..119714Clytia hemisphaericaexon
TCONS_00016361-exon-sc0000233-1491911889:123538..123693TCONS_00016361-exon-sc0000233-1491911889:123538..123693Clytia hemisphaericaexon
TCONS_00016361-exon-sc0000233-1491911889:122668..122934TCONS_00016361-exon-sc0000233-1491911889:122668..122934Clytia hemisphaericaexon
TCONS_00016361-exon-sc0000233-1491911889:121680..121825TCONS_00016361-exon-sc0000233-1491911889:121680..121825Clytia hemisphaericaexon
TCONS_00016361-exon-sc0000233-1491911889:120855..121125TCONS_00016361-exon-sc0000233-1491911889:120855..121125Clytia hemisphaericaexon
TCONS_00016361-exon-sc0000233-1491911889:120395..120517TCONS_00016361-exon-sc0000233-1491911889:120395..120517Clytia hemisphaericaexon
TCONS_00016361-exon-sc0000233-1491911889:119296..119714TCONS_00016361-exon-sc0000233-1491911889:119296..119714Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000233supercontigsc0000233:119296..123693 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.620419	0.463735	0.671235	0.595945	122.944	104.522	123.475	117.462	18.2805	32.2562	9.65769	4.17576	1.35682	0.769909	1.76288	1.6228	7.42524	8.5283	1.57795	0.77425	6.93635	6.11998	3.54493	4.89671	0	0	15.7408	17.2445	0.414637	0.182982
Blast
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BLAST of TCONS_00016361 vs. Swiss-Prot (Human)
Match: DYH2 (Dynein heavy chain 2, axonemal OS=Homo sapiens GN=DNAH2 PE=2 SV=3)

HSP 1 Score: 102.834 bits (255), Expect = 5.084e-23
Identity = 59/171 (34.50%), Postives = 94/171 (54.97%), Query Frame = 1 
Query:  373 KIPCEQLRKETNQDFEQLSPLFQAALEALNMLSKGDIVEMKSYPAPPEGVKLVAILLCVLFDVPESYKEAILLLRSDNFIQRLQFLDKDNISDSAYRKLCKFVNDPETQPTVVASKSRAAEQLCLWLRGIHSYCTIYRQLQPKK-------QSLKEAELKIAKAESKLCEM 864
            +I C+ L     +D E+  P  + A+ AL  L+K DI E+KSY  PP  V++V   + +L     ++ EA   L   NFI+ L   DKDNISD   +K+  +   P+ QP ++   S AA+ LC+W+R +  Y  +YR ++PK+         L+E +  +A+A+ KL E+
Sbjct: 3074 EIKCQALADNAQKDLEEALPALEEAMRALESLNKKDIGEIKSYGRPPAQVEIVMQAVMILRGNEPTWAEAKRQLGEQNFIKSLINFDKDNISDKVLKKIGAYCAQPDFQPDIIGRVSLAAKSLCMWVRAMELYGRLYRVVEPKRIRMNAALAQLREKQAALAEAQEKLREV 3244
The following BLAST results are available for this feature:
BLAST of TCONS_00016361 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DYH25.084e-2334.50Dynein heavy chain 2, axonemal OS=Homo sapiens GN=... [more]
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