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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00016371 ID=TCONS_00016371|Name=TCONS_00016371|organism=Clytia hemisphaerica|type=transcript|length=1981bp
aaaatattttcttgtaaacaaatgagaaaacaaacaatcggcaaaaatga
ataaatttgattcttaaTTATGTCAGTGTATTCAGTCAGATCACTAGGTT
ACTGAAGAATCTGGTATCTGAAGTGAACTGCAAAGCGATTTTCAAATATG
gcttttttgaaactttctttcGTACTGATTTTGATGTTTGCTGCAATCGA
GTGTTGCAAGGACTGGAATCGAAATTGCGCTACTTGGAAACAAAGAGAAG
GTAGTAATTGGTCCAATGTTTGTAAGAATGTCAAATTTGTGAAAGACAAT
TGCCCGAAGACATGCGGTGATTGTGATGGAGGCACAGGAGGATCTGGTGG
CACAGGAGGATCTGGTGGCACAGGGGGATCTGGCAACTGTAAAGATGAAA
ATGCAAGATGTGgagatttcaagaaaaacgaAGGTGATCAAAAGTGGGCT
AAATCatgtaaagaaagaaaattcctacAAAAGATTTGCAAGAAAACCTG
CGGGATGTGTGGCACTGGTGGCTCTGGTGGCTCTGGTGGCTCTGGAAACT
GCAAACCTGGTGCCGAACCAAAGCTTCCTTCAGGGATCCAAGCATGTACT
GATGGAAATAAAGGACATTGTGAATGTGCCAAAGCTTGTGGATTCAAAAC
GTATGTCTTCACTGTTCAGAATCAAAAACGATGTTTCAGTATCTATCGAC
CATCTGAATTGACCAAGAAATTGCCAGTTGTCATGACCAGTCAATGTTAT
GGTAAGGACAGATTGGGAAGTCTTCAAATGAATAATGCTAATTCACCATC
GAATGTAGCAGCAGCTCGCTATGGGTTTGCCAGATTTGGATTATCCACTC
CAGATGGTGGTTGGACCTTTGGTAATAATGGAATCATCAATGACAAAACT
CCAATGCCTTGCTCAAATAAAGATAGCAAGGATATGGAGTATGTTggaaa
gatttttgaatttattgacaaaaatccaGAAATCTTCAACACTGACAAAG
TCTACACTGAAGGATTCTCTCAAAACTCCATGTTCTCTGCTTATATCGGA
TTCTGCCATTCTGACAGAGTCACTGGTATCTGGCAAGGTGGTAGTGGTCT
TGCATTTAAAACTGACAAGGATATCACTCTCCCTGGAATGCAAACCAAAT
GCTCGAGAAGTGCTTTCGACAAGTATCAACGACGCTGTCAACAATACCAG
CCATGCACCGATTGCAAATACTGGCCTATCTATCCATGCTATCAACCTAA
GAAGCCTATGATTGCATGTGTGTCAGACTATAACAACGATTTCATTGCGT
CCTCGAGATCCAAACCTGAAACAGAATCGACCACACTGAATATGTACAAT
GTTGCCAAAGCTGAAGGACACGATGCTCGATTGTTGAGATTCAAACCATC
CGGCAATATCCGTGGTGGACACTCCAATCCACAGAATGCAGCATACTGGC
AAGCTGGTTGTTGGGGAATTACACCACAATGCTCCAAGCAGTGCGAAACA
TCTTTCATCCAATGTGTCCAAAATAGGAAATCATCTTCTGGATCAAGCAG
AGCTTTCTTAGATTGCATCAAAGGAGATGGTTTCGCTAAGCTGTCTGGCT
GTGATTCAACCTGTTCACCTACATTCAAAATGCTTGAACAAAGTGAACAA
CCGTACAAGTCAGAATTTGTTTACGGCAAATTTGGTGCGAATAACCAAAG
TTTAGGACAAAAACCTAGCACAAGCAAATGTACTGCTGCATAAGATGGAC
TTGATTTATCATTGAAAataattcattttattttgtaatCTTTAGGTTAT
GATATAGTGAACTATTTTTGTATGGGTTaatcaaaagtattttttttctc
agctGGCCCCTATTCCCGAGCCCAACCACCAATACCGCATCAAGTATGAT
AGCAGTGAAACTTAAgagatttttttgtgaaaaataccctgaaattccaC
CCGCTCTCAATACACAATGGATTTCTGCGCT Run BLAST on NCBI transcript from alignment at sc0000233:283339..286421- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00016371 ID=TCONS_00016371|Name=TCONS_00016371|organism=Clytia hemisphaerica|type=transcript|length=3083bp|location=Sequence derived from alignment at sc0000233:283339..286421- (Clytia hemisphaerica)
AAAATATTTTCTTGTAAACAAATGAGAAAACAAACAATCGGCAAAAATGA
ATAAATTTGATTCTTAATTATGTCAGTGTATTCAGTCAGATCACTAGGTT
ACTGAAGAATCTGGTATCTGAAGTGAACTGCAAAGCGATTTTCAAATATG
GCTTTTTTGAAACTTTCTTTCGTACTGATTTTGATGTTTGCTGCAATCGA
GTGTTGCAAGGACTGGAATCGAAATTGCGCTACTTGGAAACAAAGAGAAG
GTAGTAATTGGTCCAATGTTTGTAAGAATGTCAAATTTGTGAAAGACAAT
TGCCCGAAGACATGCGGTGATTGTAAGTAAAAGTTATTTTTAATTTTTTA
ATTTTTGCTCAATAAATAAATAAAGTCGATATTTTAGGTAGTTAATCCGG
TCATATAGGTCTTTTAAACATCCTTTGACTGTTTCCACTGGATCCACATC
CAGCCGACTCAGCCATCTTTGCACCAAAAAGAACAATGAAAATATTAGAA
TTTTTACTGGGAAGCTCTTTTAGTGCAGCTAACACCTTAGACTAATTGGC
GATTATGGCATCACTTAATAATATCATGTACAGTATAGATTTTGGACGAG
CACTGCCCTTTATTGTCTTTCAAAATTGATCAAAAAGGCTCTCGAATGAG
ATCAATAGAATTTACAAATCGATATTACGACACTGAATTTCACATAAAGG
CTGACCGTTTTTTGTGATTTTGATCTTAGGTGATGGAGGCACAGGAGGAT
CTGGTGGCACAGGAGGATCTGGTGGCACAGGGGGATCTGGCAACTGTAAA
GATGAAAATGCAAGATGTGGAGATTTCAAGAAAAACGAAGGTGATCAAAA
GTGGGCTAAATCATGTAAAGAAAGAAAATTCCTACAAAAGATTTGCAAGA
AAACCTGCGGGATGTGTAAGTGAATTGGTTTCTGTAATTTTCTATATATT
GATAATTGGCAGACGATTCCCACAATACCAACCTTTGGGGTCGTCCACAT
AGTGCGTATGCACTAAAATGTCGAAAATTGAGTACTCCCTTCCCCCTGTA
CGCAAGCGTAAATGGCTATATCCCCTGGTAAGTACGTAAGTACGTCAACC
CCTCCCCCTCGGTTGAAGAGAATTTCGAATTCAAATCGTCTGGTTCAGAC
CTTTATTTCATACATGAAACTCAATGTTTATTAAGAAACTTTTTCTTAGG
TTTCTGCTCATCCTCTAGCGAAAAAGTTTCGTATAGAGAGTATATCTATA
GAGGTCTGCGATTCAGACTACTTTTTCTTTTCCTTGATGCGTATAAGAAG
CATAAAAGTCGACAAAAAACAAACAAAAAAAGGCTATGTAAAAAATTTTC
TCTGCGTACGTACATTTTCTTTTAACCCCTCCCTTCCCCCTGTACGCAAG
CATGCGCTTTTGAGAAGAGACGTGTCAACGTTGCGTGTCAGCTGGAAAGG
GGTTGTTGTAATCGATTTATTTCAGGTTTTTCTATCTACTGGTGGAAAAA
GGTTTATCTTGGGATTAACCATTACATTTCATTTCGCCTTTAATGTCTAT
TGCAAACCAAAAATTATTTCTTTCTTCATATTCATTAATTAGGTGGATCC
GGTGGCTCAGGTGGCACTGGTGGCTCTGGTGGCTCTGGTGGCTCTGGAAA
CTGCAAACCTGGTGCCGAACCAAAGCTTCCTTCAGGGATCCAAGCATGTA
CTGATGGAAATAAAGGACATTGTGAATGTGCCAAAGCTTGTGGATTCAAA
ACGTATGTCTTCACTGTTCAGAATCAAAAACGATGTTTCAGTATCTATCG
ACCATCTGAATTGACCAAGAAATTGCCAGTTGTCATGACCAGTCAATGTT
ATGGTAAGGACAGATTGGGAAGTCTTCAAATGAATAATGCTAATTCACCA
TCGAATGTAGCAGCAGCTCGCTATGGGTTTGCCAGATTTGGATTATCCAC
TCCAGATGGTGGTTGGACCTTTGGTAATAATGGAATCATCAATGACAAAA
CTCCAATGCCTTGCTCAAATAAAGATAGCAAGGATATGGAGTATGTTGGA
AAGATTTTTGAATTTATTGACAAAAATCCAGAAATCTTCAACACTGACAA
AGTCTACACTGAAGGATTCTCTCAAAACTCCATGTTCTCTGCTTATATCG
GATTCTGCCATTCTGACAGAGTCACTGGTATCTGGCAAGGTGGTAGTGGT
CTTGCATTTAAAACTGACAAGGATATCACTCTCCCTGGAATGCAAACCAA
ATGCTCGAGAAGTGCTTTCGACAAGTATCAACGACGCTGTCAACAATACC
AGCCATGCACCGATTGCAAATACTGGCCTATCTATCCATGCTATCAACCT
AAGAAGCCTATGATTGCATGTGTGTCAGACTATAACAACGATTTCATTGC
GTCCTCGAGATCCAAACCTGAAACAGAATCGACCACACTGAATATGTACA
ATGTTGCCAAAGCTGAAGGACACGATGCTCGATTGTTGAGATTCAAACCA
TCCGGCAATATCCGTGGTGGACACTCCAATCCACAGAATGCAGCATACTG
GCAAGCTGGTTGTTGGGGAATTACACCACAATGCTCCAAGCAGTGCGAAA
CATCTTTCATCCAATGTGTCCAAAATAGGAAATCATCTTCTGGATCAAGC
AGAGCTTTCTTAGATTGCATCAAAGGAGATGGTTTCGCTAAGCTGTCTGG
CTGTGATTCAACCTGTTCACCTACATTCAAAATGCTTGAACAAAGTGAAC
AACCGTACAAGTCAGAATTTGTTTACGGCAAATTTGGTGCGAATAACCAA
AGTTTAGGACAAAAACCTAGCACAAGCAAATGTACTGCTGCATAAGATGG
ACTTGATTTATCATTGAAAATAATTCATTTTATTTTGTAATCTTTAGGTT
ATGATATAGTGAACTATTTTTGTATGGGTTAATCAAAAGTATTTTTTTTC
TCAGCTGGCCCCTATTCCCGAGCCCAACCACCAATACCGCATCAAGTATG
ATAGCAGTGAAACTTAAGAGATTTTTTTGTGAAAAATACCCTGAAATTCC
ACCCGCTCTCAATACACAATGGATTTCTGCGCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00016371-exon-sc0000233-1575043694:286100..286421 | TCONS_00016371-exon-sc0000233-1575043694:286100..286421 | Clytia hemisphaerica | exon |
| TCONS_00016371-exon-sc0000233-1575043694:285507..285692 | TCONS_00016371-exon-sc0000233-1575043694:285507..285692 | Clytia hemisphaerica | exon |
| TCONS_00016371-exon-sc0000233-1575043694:283339..284811 | TCONS_00016371-exon-sc0000233-1575043694:283339..284811 | Clytia hemisphaerica | exon |
| TCONS_00016371-exon-sc0000233-1510915933:286100..286421 | TCONS_00016371-exon-sc0000233-1510915933:286100..286421 | Clytia hemisphaerica | exon |
| TCONS_00016371-exon-sc0000233-1510915933:285507..285692 | TCONS_00016371-exon-sc0000233-1510915933:285507..285692 | Clytia hemisphaerica | exon |
| TCONS_00016371-exon-sc0000233-1510915933:283339..284811 | TCONS_00016371-exon-sc0000233-1510915933:283339..284811 | Clytia hemisphaerica | exon |
| TCONS_00016371-exon-sc0000233-1491911889:286100..286421 | TCONS_00016371-exon-sc0000233-1491911889:286100..286421 | Clytia hemisphaerica | exon |
| TCONS_00016371-exon-sc0000233-1491911889:285507..285692 | TCONS_00016371-exon-sc0000233-1491911889:285507..285692 | Clytia hemisphaerica | exon |
| TCONS_00016371-exon-sc0000233-1491911889:283339..284811 | TCONS_00016371-exon-sc0000233-1491911889:283339..284811 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000233 | supercontig | sc0000233:283339..286421 - |
Blast
The following BLAST results are available for this feature:
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