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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00016374 ID=TCONS_00016374|Name=TCONS_00016374|organism=Clytia hemisphaerica|type=transcript|length=1209bp CTCCCCTACAAAAATCTACCCAAAGAATAATATTTCTGTTTCCACAACAA TATTGAATTAATAAATGTGATCGTCTATTctacaaaatttcaagaaataa gGTATAAATTTCTCGTAAAATACAAAATCAGGCATatgagaaaaactttt aaacCACAGTATAAAGGTGTAATATAACTGTGTTGTTAATGTTCTTTATA TCTGATTTATTTGGTGGTGCAAACGTCGTTTGGCCAGCTGTCACTGCATC CTTTGGAGCTTTTGCGCACTCCAAGATTTCCATTCTTGTCACTGCAGACA GGGTCTGGGATTCCATCTCCATCACAATCCTTGAAGACAAATGTTGATCC TGCGTGACTGCACCATCCTTTTGGTCGAGCACAGACTTTGCCTTTCTTGG TTGTACAGGAAGCTTTAGGCCAGACTGAAGGGCATCCTTTGGAACTTTGG ATGACACCGAGATTTCCATTGGTATCTGAGCAAACTGGATCAGGAGTACC GTCACCGTCACAATCCATCAACGTGTAAACAGATTTAGCATGACTGCACC AACCTTTGTGTCTTCTGCAAGAAAGGCATGTTGCTCCTTTAGCTCTGCAT ACTGCATGTGGCCATTCGGATTTacAAATGGATGCAGAGGAAAATGGCCC AAAGAAACATGCAAAAACCCCAAAGGAAACATTTGTTCTCGATCAAAAGG ATGGTGTGGTCATGCAGGAGCAACTTATTTCTACCAAGATTGTGATGGCG ACGGTATCTTGGATCCAATTTGTTCTGACACCAATGGTAACTTGGGAATC AtcaaaagctctcaaaaatgtAAATCCGAATGGCCACATGCAGTATGCAG AGCTAAAGGAGCAACATGCCTTTCTTGCAGAAGACACAAAGGTTGGTGCA GTCATGCTAAATCTGTTTACACCTTGATGGATTGTGACGGTGACGGTACT CCTGATCCAGTTTGCTCAGATACCAATGGAAATCTCGGTGTCATCCAAAG TTCCAAAGGATGCCCTTCAGTTTGGCCCAAAGCTTCCTGTACAACCAAGA AAGGCAAAGTGTGTGCTCGACCAAAAggatggtgcggtcatgatggaTCA ACATTTGTCTTCAAGGATTGTGATGGAGATGGAATCCCAGACCCTGTCTG CAGTGACAAGAATGGAAATCTTGGAGTACGCAAAAGCTCCAAAGGATGCA GCGACAGCT Run BLAST on NCBI protein sequence of TCONS_00016374-protein >TCONS_00016374-protein ID=TCONS_00016374-protein|Name=TCONS_00016374-protein|organism=Clytia hemisphaerica|type=polypeptide|length=223bp
MTAPTFVSSARKACCSFSSAYCMWPFGFTNGCRGKWPKETCKNPKGNICS RSKGWCGHAGATYFYQDCDGDGILDPICSDTNGNLGIIKSSQKCKSEWPH AVCRAKGATCLSCRRHKGWCSHAKSVYTLMDCDGDGTPDPVCSDTNGNLG VIQSSKGCPSVWPKASCTTKKGKVCARPKGWCGHDGSTFVFKDCDGDGIP DPVCSDKNGNLGVRKSSKGCSDS Run BLAST on NCBI transcript from alignment at sc0000233:294113..303030- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00016374 ID=TCONS_00016374|Name=TCONS_00016374|organism=Clytia hemisphaerica|type=transcript|length=8918bp|location=Sequence derived from alignment at sc0000233:294113..303030- (Clytia hemisphaerica) CTCCCCTACAAAAATCTACCCAAAGAATAATATTTCTGTTTCCACAACAA
TATTGAATTAATAAATGTGATCGTCTATTCTACAAAATTTCAAGAAATAA
GGTATAAATTTCTCGTAAAATACAAAATCAGGCATATGAGAAAAACTTTT
AAACCACAGTATAAAGGTGTAATATAACTGTGTTGTTAATGTTCTTTATA
TCTGATTTATTTGGTGGTGCAAACGTCGTTTGGCCAGCTGTCACTGCATC
CTTTGGAGCTTTTGCGCACTCCAAGATTTCCATTCTTGTCACTGCAGACA
GGGTCTGGGATTCCATCTCCATCACAATCCTTGAAGACAAATGTTGATCC
TGCGTGACTGCACCATCCTTTTGGTCGAGCACAGACTTTGCCTTTCTTGG
TTGTACAGGAAGCTTTAGGCCAGACTGAAGGGCATCCTTTGGAACTTTGG
ATGACACCGAGATTTCCATTGGTATCTGAGCAAACTGGATCAGGAGTACC
GTCACCGTCACAATCCATCAACGTGTAAACAGATTTAGCATGACTGCACC
AACCTTTGTGTCTTCTGCAAGAAAGGCATGTTGCTCCTTTAGCTCTGCAT
ACTGCATGTGGCCATTCGGATTTACATTTTTGAGAGCTTTTGATGATTCC
CAAGTTACCATTGGTGTCAGAACAAATTGGATCCAAGATACCGTCGCCAT
CACAATCTTGGTAGAAATAAGTTGCTCCTGCATGACCACACCATCCTTTT
GATCGAGAACAAATGTTTCCTTTGGGGTTTTTGCATGTTTCTTTGGGCCA
TTTTCCTCTGCATCCATTTGTCAATCCGATGACACCAAAGTTTCCATTTT
TGTCTGAACATACAGGATCAAGTTTTCCGTCATTGTCGCAATCCATGAAT
GTAAAGGTAGCACCAGCGTGGCCACACCAATTAGGCTGTCTGGCACATGA
ATTTTTACATGTCGATACACCAGTTGCTGTATAGAACAAAAGCAAACTGA
AGCAGACTTTGATCCACATCTTGTTGTTTGTAGTGTTTCTGATGACTTGC
TATTCACTCGCTTTCTTGCAAACTGAATGATTTTTTTTGCAAGTTCCAAC
ACCTATAAATAGGGCACCATTGAAGTCACAATGAACTTGATTTGCATGAT
AAACGTTGAGTCCAAATAAGGTCATTGAAATACACAGAACAATAGAATTA
GACGCCCTAATTTCAGATATTTCGTAATAGACGTTAAGCGTTGAAAAAGA
GGAAGTTAAAGATGCTGGTTATTTACCGAGTGAATATCACCCATTTATTT
GCCAGTTTTTCTTGCTATGAACAAACATTTGTAGTTCCCAAGGCGCATAC
TTGCGTCAGAACTCTAGCCCGTAAGTCCAATTACTGTAAATTTTCCTAAA
TTCCATGTCAGTATGATGGTCGTACGAGGAAGAGATAGCATGTTCCTTGC
ATGCAGCCGCCCTGGAATCATTGAGTGAACCAGCAGGAAAGGCCCTATTC
TAGTGATGTATGGTGGTCCAACCAAGATGAAGATGTATGGAGAGATTCCT
CTCTACGATTTGAATGGGCCAGAAATGCTAAGTAGCTGGACGATACGGAT
TAGGGCTACTTTCACAGGCGGACTTAGGACAATAGAGCAAGTACGTCGGG
AACATGCGAAGGAGTGCTACGCGCGTTAAAGGACAATAAAAATCACATAA
AAATACAGTTAGAAATCTCTTCCTCTGATAAGTTTGACGTGGTCTAAAAC
CGCTTACGACTTTGTTATTAACAATCTCAGGATTTGTGTCTATGGAACAT
GCTACTCACCTGTACCTTTCGTACAGTTATCCTACATTTTTTACATTATG
GTGAAATTTCCGTTTTTAGTGTACCAAGGTTCATGATGTACATATAAACA
TATTCAATTTTTTCTATAATCTAGGACACCCCTGTCTCAGTGACCCAGCT
TTCCTTCTGGGGGGAATTAAATCGTCTTTAAACGTCTCATAGCCCTGGTG
GAACTTCTTTTCACAGTTGGGATGAAAATTTTTATCGAAATCCCAATGGG
TATAGAAATTCTATCATATTACATTACATGATATTTTTTATTTATCTTAG
AGGAGGTGACGTTGAAAAAATTGATTTTCTGTCATCATTGATAGACTTGT
TGGAATTCAGGAACTCTTTTCTTTTGCGTTATGCGGGGGGGGTTTCATGG
TTGGCGGAGGAGTGGAATCGGCCCTTTTTTCGGACGGAGNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNTCAAAATTTGCGGAATTTTCGACAAAAA
TATTGAATTTCAAAGGAATTTTCGGTGACGGAATTTTGGTTCAATTTAAG
ACGGTTTGACGGAAATTGGCGAAAAAATTGACGGAATTGCGGAATCGGGT
ACCCCCTGAAACCCCCCCCCCTTATGCTTTTGTACGACTTAGAATCCCAC
TTTGCAAAAGAGTCCTTAACCGTTAAAAATTGATTATACTGCAATTACGT
AGATATATATGTATTAATGTAATATCATGTACTAAAACCCCGAATCCTAT
GAAATAGGCTAATTGTTTCGAGGTCGGAAAATCCAGTTTGGATGGTTTTG
GATTGTAATTTATCCATTGAATTTCAAATAGGGATGAATTTCAATTTTCC
AAAGGGGTTGAAATTGTAGGGTGTTATTTCCGCTGGGACGAAATTTTCGC
CAAATTGTCCCGTGAGTAGGGGGTCCCATATGAGGTTGTTTTCTAAAAGA
CAGTGAAAGTTTTTGAACCCCGACTAGATTTCTGAGCTATAAAAACAATA
GATTTCAAAATCATTATTGAAGAAATTTTCTACCCCCCCCCCTTCCACAT
TTCCACATATTGTTATATTATGACTCCTTAATTTCATCCTGACTCGATAA
AGAATTCTTGCACCAGGTCATTGAGATTGGGGTGTATTTTAACAAGAACT
TTTTGAAAATTCTGAGTTTCATAGAATCGTCAAAGCTGGTCACTGAAGGG
AAACATTTACAAAATCGTACCCAGACTCTTAGTTCGCTTTTAAATTTTTC
TCGTAATGTATGAGTTTTGAAAAAGATATTTTTTGAAACGAGATTTAATT
ATTTAACCGATTATCTACATAACCTTACCAACAAGCCAGCTCACTCATGA
ATTTAAGTTGAGGACTTCCAGCCCCATTGGCACACCCCTGTCTCAGTTAC
ACAAAGAGAAAGTCTAAATGCAGTATAGTTTTCTTAAAGATAGCATTGCA
GGTCATTTTCCTCACTGAAAAACATTTTTGACCTATCTTTCCAGTGAGTT
CTCCCACTGGGCCCGTGTGTTTCCTTCGTCCAGAGATGTTTCCTTTAGAG
CTTCTACAGCTATCTGTAAAAACCTCATCTCCATACAAATTTGCAAAAGC
TCCTCCTTTCATTAATATCTTCCTGCTTGAACCAGGTAAAGTTTCTGTTA
GCAGAAAAATATTGACATTGCTGCGAAATTATTGCACAAGCCTCAGAAAA
AAACACGTCAGATTTTATCAAGTAGAAGAAAAAGAATGCGGAAGAAAATT
TTTATTTTGCGGAAGAAAATTTTTACTTCTTTTATTATTTCTTGCTATTA
TCTGTACATTCATTCAGACCCGGTGGAACAACCGTAAAAGTAGGGAGGCT
GAAGGCTCAAAATGAGATAAAATTCGGTAGAAATTTGAGAAAAATTTCAT
TTGCTAAAAAGCAGAGAGCCTGAAGTCTCCCCAGTCTCCCCGCTCGTACC
CGGCAAACCTAATATCCCTCCAGAATTAACCCCACTAGCTAGAAAAATCC
CCCCTTCCCCAAGGGAGTGACCTACCATAGATGCGGCACTGTAAGGGTGT
TGGCAAAATTTAAGAAAGCTTGGCCATTTTTTGCTTTTGACAAAGACTAC
AAAGATTTTTAAGAAAATGCTTTACTCCAATTTAGCTAATTTGACTCTGC
ACTTTATAGGTCCAATTTCGAGATGCTAATTTTTTTCCACAAATTCGGTA
GTTTCCAGATCGAATGCCTTGGGGGATTTTCACCAGGTTACTGACACAGG
GGTGTCCTTAAAACCTAAAAATGCAAAAAAAGATTATTGGAATCAGTACG
ATTTTTAGAAATATCCATATGTGACTGACTACTTCCACAAGTTTAACAAT
TTCTAGGAATGTTATATTTCCTAGAAATTGTTAACATGTCAAATTCAAGT
TTGTATATTTCTAAAGACGTGGAAAATATCTGATGTCTTCTATATTTCCA
ATTTTGAATTCTATGAATTTTACTTTCAAGAATTGTTATGAAGGAAAATA
TTTTTACTGGCAAAAACTTGGAGAGTAGGTTGTCATCAAAGCAGACAAAA
CCTAGAACTTTGAATTATTAAAAACGGCAATTTCACCATGATTCATCAAA
AGTTGTTAAGGTATCACCAAAATGATATTTGAAATTCAATGGAAAAAAAT
TGCACTCTAAAACCATCCCCATTCGATTTTTTGACCTTGGAACAATAAAA
TTTCTATCTCCACTCTCCATCAAAAGCATCCGATGAAGTAACCCAGTGAA
TACCAAATCTTCAATCACTGTTGCCCAATTCCCTCATTTTTTCGCGAAAA
ATGGAGTATAAAATACAATGGTTCAGACTTTCAGCGCCTTTTTCCTGTAC
AAAGTAAGTCTTGAGCTGGCCAATTTTGTTGCCTACCAGAGGTATAATTT
GCCTTCCTACTTACTACACTTGTCCATTAACCTTTGGAAACGAAAGTCCG
GTCCTACAGTAGGATCCCTGTCTCACAGCTCCGGATTGAACTTTTTCCAC
AGTGGAGATGAAACTTTCTATGCAGCCGAATAGAGATAGAAATTATATTG
TGCCAAGGTCAAAAAATCGAATGGGGATGGTTTTGGTGTTTAATTTTTTT
CCATTGATTTTCAAATGGGGATTATAACAAAGTCAATTNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNATGCTTTCTATGCAGCCGAATAGAGATAGAAATTATATTG
TGCCAAGGTCAAAAAATCGAATGGGGATGGTTTTGGTGTTTAATTTTTTT
CCATTGATTTTCAAATGGGGATTATAACAAAGTCAATTTTCCACTTGGGC
TGAAATTAAGAGTATATTTTCTAGCGGGGACGAAATTTCTCCCGGATCTG
TTATACAGGTGTGTTTCTATTATTTCCTTTCACACCTAATGGTTCATAGG
GCGTTCACCTAATGGTTCATAGGGCGTTCACCTAATGGTTCATAGGGTGT
TCACTTAATGGTTCTGGTGTGACTGCAAGTGTCCTTACCATCATCTAGTC
TAAAGTCCTAATCGGGCAACCACATTATTCATAATTGGCAAAGGGGGTGC
ACAGGAGGAAGAAGATGTTTTACACCAGTCGTTCAAGCCTCTATTTTGCC
GTAAGTATGCGCCTTGGGAACTACAAATGTTTGTTCATAGCAAGAAAAAC
TGGCAAATAAATGGGTGATATTCACTCGGTAAATAACCAGCATCTTTAAC
TTCCTCTTTTTCAACGCTTAACGTCTATTACGAAATATCTAAAATTAATG
ATTCTAATTCTATTGTTCTGTGTATTTCAATGACTTTATTTGGACTCAAC
GTTTATCATGCAAATCAAGTTCATTGTGACTTCATTGGTGCCCTATTTAT
AGGTGTCAGAATTTGCAAAAAAATCATTCAGTTTTCAAGAAAGCGAGTGA
ATAGCAAGTCATCAGAAACACTACAAACAACAAGATGTGGATCAAAGTCT
GCTTCAGTTTGCTTTTGTTCTATACAGCAACTGGTGTATCGACATGTAAA
AATTCATGTGCCAGACAGCCTAATTGGTGTGGCCACGCTGGTGCTACCTT
TACATTCATGGATTGCGACAATGACGGAAAACTTGATCCTGTATGTTCAG
ACAAAAATGGAAACTTTGGTGTCATCGGATTGACAAATGGATGCAGAGGA
AAATGGCCCAAAGAAACATGCAAAAACCCCAAAGGAAACATTTGTTCTCG
ATCAAAAGGATGGTGTGGTCATGCAGGAGCAACTTATTTCTACCAAGATT
GTGATGGCGACGGTATCTTGGATCCAATTTGTTCTGACACCAATGGTAAC
TTGGGAATCATCAAAAGCTCTCAAAAATGTAAATCCGAATGGCCACATGC
AGTATGCAGAGCTAAAGGAGCAACATGCCTTTCTTGCAGAAGACACAAAG
GTTGGTGCAGTCATGCTAAATCTGTTTACACCTTGATGGATTGTGACGGT
GACGGTACTCCTGATCCAGTTTGCTCAGATACCAATGGAAATCTCGGTGT
CATCCAAAGTTCCAAAGGATGCCCTTCAGTTTGGCCCAAAGCTTCCTGTA
CAACCAAGAAAGGCAAAGTGTGTGCTCGACCAAAAGGATGGTGCGGTCAT
GATGGATCAACATTTGTCTTCAAGGATTGTGATGGAGATGGAATCCCAGA
CCCTGTCTGCAGTGACAAGAATGGAAATCTTGGAGTACGCAAAAGCTCCA
AAGGATGCAGCGACAGCT Coding sequence (CDS) from alignment at sc0000233:294113..303030- >TCONS_00016374 ID=TCONS_00016374|Name=TCONS_00016374|organism=Clytia hemisphaerica|type=CDS|length=1338bp|location=Sequence derived from alignment at sc0000233:294113..303030- (Clytia hemisphaerica) AAATGGATGCAGAGGAAAATGGCCCAAAGAAACATGCAAAAACCCCAAAG GAAACATTTGTTCTCGATCAAAAGGATGGTGTGGTCATGCAGGAGCAACT TATTTCTACCAAGATTGTGATGGCGACGGTATCTTGGATCCAATTTGTTC TGACACCAATGGTAACTTGGGAATCATCAAAAGCTCTCAAAAATGTAAAT CCGAATGGCCACATGCAGTATGCAGAGCTAAAGGAGCAACATGCCTTTCT TGCAGAAGACACAAAGGTTGGTGCAGTCATGCTAAATCTGTTTACACCTT GATGGATTGTGACGGTGACGGTACTCCTGATCCAGTTTGCTCAGATACCA ATGGAAATCTCGGTGTCATCCAAAGTTCCAAAGGATGCCCTTCAGTTTGG CCCAAAGCTTCCTGTACAACCAAGAAAGGCAAAGTGTGTGCTCGACCAAA AGGATGGTGCGGTCATGATGGATCAACATTTGTCTTCAAGGATTGTGATG GAGATGGAATCCCAGACCCTGTCTGCAGTGACAAGAATGGAAATCTTGGA GTACGCAAAAGCTCCAAAGGATGCAGCGACAGCATGACTGCACCAACCTT TGTGTCTTCTGCAAGAAAGGCATGTTGCTCCTTTAGCTCTGCATACTGCA TGTGGCCATTCGGATTTACAAATGGATGCAGAGGAAAATGGCCCAAAGAA ACATGCAAAAACCCCAAAGGAAACATTTGTTCTCGATCAAAAGGATGGTG TGGTCATGCAGGAGCAACTTATTTCTACCAAGATTGTGATGGCGACGGTA TCTTGGATCCAATTTGTTCTGACACCAATGGTAACTTGGGAATCATCAAA AGCTCTCAAAAATGTAAATCCGAATGGCCACATGCAGTATGCAGAGCTAA AGGAGCAACATGCCTTTCTTGCAGAAGACACAAAGGTTGGTGCAGTCATG CTAAATCTGTTTACACCTTGATGGATTGTGACGGTGACGGTACTCCTGAT CCAGTTTGCTCAGATACCAATGGAAATCTCGGTGTCATCCAAAGTTCCAA AGGATGCCCTTCAGTTTGGCCCAAAGCTTCCTGTACAACCAAGAAAGGCA AAGTGTGTGCTCGACCAAAAGGATGGTGCGGTCATGATGGATCAACATTT GTCTTCAAGGATTGTGATGGAGATGGAATCCCAGACCCTGTCTGCAGTGA CAAGAATGGAAATCTTGGAGTACGCAAAAGCTCCAAAGGATGCAGCGACA GCATGACTGCACCAACCTTTGTGTCTTCTGCAAGAAAGGCATGTTGCTCC TTTAGCTCTGCATACTGCATGTGGCCATTCGGATTTAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00016374-exon-sc0000233-1575043694:302406..303030 | TCONS_00016374-exon-sc0000233-1575043694:302406..303030 | Clytia hemisphaerica | exon |
TCONS_00016374-exon-sc0000233-1575043694:294113..294696 | TCONS_00016374-exon-sc0000233-1575043694:294113..294696 | Clytia hemisphaerica | exon |
TCONS_00016374-exon-sc0000233-1510915933:302406..303030 | TCONS_00016374-exon-sc0000233-1510915933:302406..303030 | Clytia hemisphaerica | exon |
TCONS_00016374-exon-sc0000233-1510915933:294113..294696 | TCONS_00016374-exon-sc0000233-1510915933:294113..294696 | Clytia hemisphaerica | exon |
TCONS_00016374-exon-sc0000233-1491911889:302406..303030 | TCONS_00016374-exon-sc0000233-1491911889:302406..303030 | Clytia hemisphaerica | exon |
TCONS_00016374-exon-sc0000233-1491911889:294113..294696 | TCONS_00016374-exon-sc0000233-1491911889:294113..294696 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000233 | supercontig | sc0000233:294113..303030 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
Term | Definition |
IPR028974 | TSP_type-3_rpt |
Vocabulary: Molecular Function
Term | Definition |
GO:0005509 | calcium ion binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category |
Term Accession |
Term Name |
molecular_function |
GO:0005509 |
calcium ion binding |
Blast
The following BLAST results are available for this feature:
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