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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00016375 ID=TCONS_00016375|Name=TCONS_00016375|organism=Clytia hemisphaerica|type=transcript|length=2699bp
CTTAGTATCAAGAGCAGCAGACTCGAAAACCGAAGAAGAAgcgaaaaaag
aagaagaaatccaACAATTCTAATGAACCTGAGAATACAAATCATCTTCA
TTTCAACGaagatgaatttgaaaatctcCTCATTCACGAAACAGAAAATG
ATAATCAAGACCATACTCAACATGTTGGATTTGTAGTTGAAAATCAGGAC
CAGATTGTTGAAGATGAATGTCAATTTGTTGAACAGCAAGAAAGAGAAGT
GGTTACAACAACTTCTGAACAGTACACAGACGAATGGTCGGATTATTTGT
CAAACACACCAACGGGCTGGGATGAATATTGGACTCAATACTCTAATCAA
CTGGTTTGGCATGATTGGTGTCAgaaatttaatgaaatgaaaatacagTT
TATTCAAAAGAAACAGATCGGagGCGACTCTTTGAAGAATTTAACGGTTG
ACGATGTTGATTGGAACGATGAAGCTTGGAATGAAATTTATCAATCCCAT
TACTGGCAATCTTTCTGCTTCTACCTGGAGgaatataaaaaagacaacTT
GAAAGAAGAAAGACCCCTTGTGGAAACTGGGCCAAACATCGATAATTGCG
AACAATCTCcgaaatcaaacaaaggaatgGAAGAACCAAATGCTTTGATA
TTGACGACTGAGAATCAAGAGATCAGTGATGACAAAACCTGCATAGCAAT
GACTGATCTCACTGAATATCAAGACAAAGCCAGGTCCGAAGAGAATGTAG
AATCGATCGTATCAACCTTGTTAGAGGAAATGGTGACGAAAGTggtcaaa
aacacaaagaaatcttcatcCTCAAAAAGTAAGAAGAAAACTCGGAAATA
TGAAGGCGTCGGTGCATTCTTGGAGAGGCTAAATACTTCATCAACTGttg
atgatgataatgatgGTGATGGTGAAACTAAAGATGTTGTTGGCGATTCA
ACGCCGCTGGATCAGTTGATGGAACAAGAAGGAGGAAACTGCTCGCCTGT
TTCTGAGCAAAGTGAACATCAACCAAAAGTAACCGATGCTGAGATGGCGG
ATAGTATAGAAACAACGGACCATCACGCTTCGAATATCACAGAACAAATA
CCTTTCGATTACTCTTTATTTGGACTTTCAAGTAACcgtaacaaaagaaa
acattcaCCGTTATTCAAAAGAGCTGAAACCTGGTATTTACCACCTTATT
CGGGGAAACGAAAACGGGTTACTTTCACTGACGAAAACACCGAAACGGAA
AGTTTATCTATGAACTTGGATTCGACAAAAGATGTAGTGTCTTCATTGGA
ATCAGACAAGAGTCATTCCTTAGAATCGAAACcgttcttcaaaaatgttt
cgAAATTTTTGAGGACTATTAAAGATAAAATTACGAAAACCTTCAAGATA
AGTAATAACAACCAGGCCAAGTCTGATTCTCTTTCGAACCATACCGAGAC
TAACGAACTCAAAGAAGAAACACCTGAAGCAGGCCTCCCTCCTCCTAAAC
GTAAATCTAGGCGGACCTTCTATCACGAACATATTCCTGATGAAATAGTG
GACCAGTTCGGTAAAGAAATTGGGAAATACTGGGCTCAACGTTACCGATA
TTTTTCCCGATATGACGAAGGTATACAGCTTGACCGCGAGGGTTGGTTTT
CAGTGACACCGGNGGGAAATACTGGGCTCAACGTTACCGATATTTTTCCC
GATATGACGAAGGTATACAGCTTGACCGCGAGGGTTGGTTTTCAGTGACA
CCGGAAAAGATAGCGGAACACATTGCGGAAAGATGTCAATCTGATGTCGT
TGTGGATGCATTCTGCGGCGTCGGTGGCAACGCTATACAGTTTGCGTTTA
CGTGTCATCACGTTATTGCGATTGATATTGATCCCGTACGTCTAGAATGC
GCCCGTCACAATGCACGCGTTTACGGCGTCGAGGATCGTATATCGTTTAT
ATTAGGCGATTTCTTTCAATTAGCACCTTACCTAAAAGCAGATGTTGTTT
TCCTATCACCTCCATGGGGCGGTCCAGATTATATCTCAGCGGACGTTTTC
GATATTGAAACAATGATGTTACCGGTGGGAGGTACGGAACTATTCCGGTA
TGCATCAATGATAACCGGGAATGTGGCAATGTTCTTACCAAGGAATGTTG
ATGTAGAGCAAGTCATCGCATTAACTGAACCGGGTCGTAAAGTTGAAATC
GAGAAAAACTTGTTGAACAACAAAGTGAAAACTATCATGGTTTACTATGG
TGATTTAGTATCTAATATGACTTGACTCGATAGTGTGTCTTTCTAGTTAT
TGCTCGACTCGATAAATCTCATTCAAATTCTTTCTNCTATGGTGATTTAG
TATCTAATATGACTTGACTCGATAGTGTGTCTTTCTAGTTATTGCTCGAC
TCGATAAATCTCATTCAAATTCTTTCTCCTTAAGAATTAGTTTGTTACTC
TCGTGTACCCAATAGTAATAATCGGAAGTTAAAAAATATCTTGTTGTAAA
TAATCTTAACCTTTCCAGCacgctgttttttatattttcacgctgtctac
gcgcaactttttttgagaaaacgcgGGGTTTGGGAAATTTGCCATAATTC
AAGAACTAGAAATCTTTTGGCAAAAAGTAAActatccctgaaaagctaat
taAGTTTTGCAGCTTTTAGGTTGGGTACAAGTTCAATTAAAGTATTCTA Run BLAST on NCBI transcript from alignment at sc0000233:323048..329172- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00016375 ID=TCONS_00016375|Name=TCONS_00016375|organism=Clytia hemisphaerica|type=transcript|length=6125bp|location=Sequence derived from alignment at sc0000233:323048..329172- (Clytia hemisphaerica)
CTTAGTATCAAGAGCAGCAGACTCGAAAACCGAAGAAGAAGCGAAAAAAG
AAGAAGAAATCCAACAATTCTAATGAACCTGAGAATACAAATCATCTTCA
TTTCAACGAAGATGAATTTGAAAATCTCCTCATTCACGAAACAGAAAATG
ATAATCAAGACCATACTCAACATGTTGGATTTGTAGTTGAAAATCAGGAC
CAGATTGTTGAAGATGAATGTCAATTTGTTGAACAGCAAGAAAGAGAAGT
GGTTACAACAACTTCTGAACAGTACACAGACGAATGGTCGGATTATTTGT
CAAACACACCAACGGGCTGGGATGAATATTGGACTCAATACTCTAATCAA
CTGGTTTGGCATGATTGGTGTCAGAAATTTAATGAAATGAAAATACAGTT
TATTCAAAAGAAACAGATCGGAGGTTTTAAAGATTTTTTATTAAAAAGAC
GGTCACTGTTTCTGTTTTTATGCGATCGTCCAAAATACCGCTCCAGAGAT
AATTTTTCTTCTCCAANTTGTTTTTATCGTCCAAAATACCGCTCCAGAGA
TAATTTTTCTTCTCCAAAAGTCGATCTTTCTCTCCCCCCCCCTACAAAAT
TACCCATTAAAGGAAATAAAGAAATATCACGAGATGGACAACACACTCTC
TTTTCCCGGATTGGGTCCGACTCACAGATGAGTAGGAATCTCTGTGCTAA
CAAGTATTGTGACTCTGAAATTACGAGCTTTAAAAGCCATGACTTACACA
CCTTGACAGATGGTGATGCAAGACCGAGAGTGTAGCATATTTTGCGGTTC
TTCGCAATGCGCAAGCACATGAATATTTTTCGAAAGTTAAGGGTGTTTAA
ATTCATTCTGCAAGGGGGTCCGACAAAAAGCTTTGATAGGTCAAAAGTCT
GACGTCACAAGAAACTGCTTGGGCAAAAATTAAAGAAAAATTAAAAACCC
AGGATTAAAACTTATCATTTCAGGCGACTCTTTGAAGAATTTAACGGTTG
ACGATGTTGATTGGAACGATGAAGCTTGGAATGAAATTTATCAATCCCAT
TACTGGCAATCTTTCTGCTTCTACCTGGAGGAATATAAAAAAGACAACTT
GAAAGAAGGTAACAAATACATAACGAGGACCTTGATTTCGTGTTTAACTT
TTAAGCTAAGAAAAGAGAAACCCCTTCAGTATTCAGCTCAAACTTCTCCT
CTGTTGGATCGTAATTGGGTTAATATTTTTTTAAATCTGAGCCTATTTTT
CTATCCTAAATCTTTCAAGAACTTATTGGAAATTTTTCACTTACGTCTGC
TTACACACCTTTTTTATAAGAACAACTTTTTAAAAACATGAGACTCGATT
CGACCAAATCCTAAGAACATAAAAAGAACAATCCCAGCCTCAGATTTAAA
CAGTGACAAAAAAAGCTGATTAGAGAACCCTTTAAGGTCATTTAATTTTA
TTCAACATAATAAGCGTATAACATTAAAGTCTAATAAAATCACTTAAATT
GGGAGAGCTGAGCCTTAAAAATTTATTGGATCTGATAAAAAAAGCCCGTA
TTTTACGTTTCAGAAAGACCCCTTGTGGAAACTGGGCCAAACATCGATAA
TTGCGAACAATCTCCGAAATCAAACAAAGGAATGGAAGAACCAAATGCTT
TGATATTGACGACTGAGAATCAAGAGATCAGTGATGACAAAACCTGCATA
GCAATGACTGATCTCACTGAATATCAAGACAAAGCCAGGTCCGAAGAGAA
TGTAGAATCGATCGTATCAACCTTGTTAGAGGAAATGGTGACGAAAGTGG
TCAAAAACACAAAGAAATCTTCATCCTCAAAAAGTAAGAAGAAAACTCGG
AAATATGAAGGCGTCGGTGCATTCTTGGAGAGGCTAAATACTTCATCAAC
TGTTGATGATGATAATGATGGTGATGGTGAAACTAAAGATGTTGTTGGCG
ATTCAACGCCGCTGGATCAGTTGATGGAACAAGAAGGAGGAAACTGCTCG
CCTGTTTCTGAGCAAAGTGAACATCAACCAAAAGTAACCGATGCTGAGGT
AAGCCCAGGGGACATCGAGGTAGGTTGTTTATTTTCTTCGTATACTAATC
AAGATTGCCAAGATTGCCAAGGCTTGCAAAAGAATATTGACCCCTGCAGC
GAGAAATGCATGTGGGGATAGTATGCGTCATATTAAAGTCCTCCTTTTCT
TCCAATACATAGTTTATCGCCATTTCACTCAACTAAACTCGAACACAGTC
CCCTTTTTTGATATGGTTGACAAAATGTGTTTAAAAACAAAACTTAAACA
TAGTGCCCCCCCCCCCCTTTATAAAGGGGGGGGGAAACCAATTTTCCAAT
TTTGGGTGGGTGAGGGGGGAAATGAAAATTTGAATAGTAAAGGGGGGGGG
GACCGAATTGTGCAATTTTGGAAAGGAGGGGGGGGAAATGAAAATTTGAA
TAGTAAAGGGGGGGGGGAACCAATTTTCCAATTTTGGATGGGTGAGGGGG
GAGATGAAAATTTGAATAGTAAAGGGGGGGGAGAGGGGGGAAAACATTTG
GTGGGGGAGTGTGAAATCACTTCAACTTTATCTCAGCAACCAAGGTCATT
CCACATGATATGTGATTAGATCATGATTGAAAAATCACTAGGCATAAAGA
TTTTTTATTAAAAAGACGGTCACTGTTTTTGTTTTTATCGTTCAAAATAC
CGCTCCAGAGATAATTTTTCATCTCCAAAAGTCGATCTTTCTCTCCCCCC
CTACAAAATTACCCATTAAAGGAAATAAAGAAATATCACGAGATGGACAA
CACACTCTCTTTTCCCGGATTGGGTCCGACTCACAAATGAGTAGGAATCT
CTGTGCTAACAAGTATTGTGACTCTGAAATTACGAGCTTTAAAAGCCATG
ACTTACACACCTTGACAGATGGTGATGCAAGACCGAGAGTGTAGCATATT
TTGCGGTCCTTCGCAATGCGCAAGCACATGAATATTTTTCGAAAGTTAAG
GGTGTTTAAATTCATTCTGCAAGGGGGTCCGACAAAAAGCTTTGATAGGT
CAATTTTCCAATTTTGGATGGGTGAGGGGGGAGATGAAAATTTGAATAGT
AAAGGGGGGAGAGGGGGGCAAAAATTTGGTGGGGGGAGTGTGAAATCACT
TCAACTTTATCTCAGCAACCAAGGTCAGTCCACATGATATGTGATTAGAT
CATGATTGAAAAATTCACTAGGCATAAAAACTGAGCAGAAAAGTGAAAGT
TCAGTGTTTTAAGAATCAAAATTCAATGCTCATTCCCAAAGTGATTACTT
TTTTAGCCAGAGAGAAGTACATTTTTTTCATTTGTATTTCAGAAAGAGAA
AGTTTGATTGAGTTTTGTTTTGAGTGATATTTGAAAATGGCTGATTTTTT
TAAAAAAAGAAAGAAGAGGAAAAAGTTGTTTTGATTTTATTTAGGATTTT
AATTTTTCATTTCATTGTTGTTTTAAGTCTGCTTTTCTAAGCATGTTTGT
TTATATTAACCTATTTTCGTTCTATTTTGTCTAGTATTCCTTTTGCAGGG
AGTTTCTAAACATCGAAATGGCGACCACGACCAGCGACCACGACCGGCGA
CCAGATAAATTTGGATTATCGAGTTTATCTGCTCTCTCCACCGTAGAGAA
TGTTTAAATCAAGTCCTCCAGTATACTAAAAAGTGACCTTTGAAGTAACC
AGTCATTTTCTTGACAAAGTGACACTATTTGGAAAAAATATTGACAGTAG
GAAAAAATTGGAAAGACCAGTTTTAGAGATATGAATCTAATCAATTATTC
TATTGTCTTTATGCTGACAAAATGACTAATTTCGACAGAAATAACAATCT
CATGATGAAATACAAAGCTTCTCAAACCATTTTCAAAAAATTTTGTGCCA
CTAATTATTTTGATGCTGATAATACAAAAGGATAGAAATTGACACCATAA
TCAAGCTCCAAGAGCGTCGAAATGGTTGTTTTACGTATTTGGCACGTGGC
TTTAAATAGATGAGACAGGGGTGAGCTTAATATGATATATATTCATATTC
AAATGATTAGGATAGACACTCTACGTTGGAGAAAGGGAAAAACTCGATTA
CTCAAATTTATCTGTTCGCTGGTCGTAGTCGCCGGTCGTGGTCATCATTT
TTGGTCGACGTTTAGAAACTCCCCCTTTTGCAGCAAAATTTTATGTTTGT
GTCAGGTTGAAATTTGAGAAATTTATATGGGTATATGGGGGGAACTGATA
TTTTCAGAATTTTCTGGGGGGAAAGCAAAAAAGAGGGGGGAAACTAAAAA
ACTGAAAAGTCATAGGGGGGGGGAGAGGGGGAGATTTAAAAAAATCAAGA
ATGTGGTTGGGGGAACAAACCCAGGAGGACACTATGTTAAAAATGGTTCT
TCAATTTTTGAGACAACATTTGTTTTAGTACAAATAACTTAATATTTTCA
ATTCAAAAACTTCTTTCAGATGGCGGATAGTATAGAAACAACGGACCATC
ACGCTTCGAATATCACAGAACAAATACCTTTCGATTACTCTTTATTTGGA
CTTTCAAGTAACCGTAACAAAAGAAAACATTCACCGTTATTCAAAAGAGC
TGAAACCTGGTATTTACCACCTTATTCGGGGAAACGAAAACGGGTTACTT
TCACTGACGAAAACACCGAAACGGAAAGTTTATCTATGAACTTGGATTCG
ACAAAAGATGTAGTGTCTTCATTGGAATCAGACAAGAGTCATTCCTTAGA
ATCGAAACCGTTCTTCAAAAATGTTTCGAAATTTTTGAGGACTATTAAAG
ATAAAATTACGAAAACCTTCAAGATAAGTAATAACAACCAGGCCAAGTCT
GATTCTCTTTCGAACCATACCGAGACTAACGAACTCAAAGAAGAAACACC
TGAAGCAGGCCTCCCTCCTCCTAAACGTAAATCTAGGCGGACCTTCTATC
ACGAACATATTCCTGATGAAATAGTGGACCAGTTCGGTAAAGAAATTGGG
AAATACTGGGCTCAACGTTACCGATATTTTTCCCGATATGACGAAGGTAT
ACAGCTTGACCGCGAGGGTTGGTTTTCAGTGACACCGGNGGGAAATACTG
GGCTCAACGTTACCGATATTTTTCCCGATATGACGAAGGTATACAGCTTG
ACCGCGAGGGTTGGTTTTCAGTGACACCGGAAAAGATAGCGGAACACATT
GCGGAAAGATGTCAATCTGATGTCGTTGTGGATGCATTCTGCGGCGTCGG
TGGCAACGCTATACAGTTTGCGTTTACGTGTCATCACGTTATTGCGATTG
ATATTGATCCCGTACGTCTAGAATGCGCCCGTCACAATGCACGCGTTTAC
GGCGTCGAGGATCGTATATCGTTTATATTAGGCGATTTCTTTCAATTAGC
ACCTTACCTAAAAGCAGATGTTGTTTTCCTATCACCTCCATGGGGCGGTC
CAGATTATATCTCAGCGGACGTTTTCGATATTGAAACAATGATGTTACCG
GTGGGAGGTACGGAACTATTCCGGTATGCATCAATGATAACCGGGAATGT
GGCAATGTTCTTACCAAGGAATGTTGATGTAGAGCAAGTCATCGCATTAA
CTGAACCGGGTCGTAAAGTTGAAATCGAGAAAAACTTGTTGAACAACAAA
GTGAAAACTATCATGGTTTACTATGGTGATTTAGTATCTAATATGACTTG
ACTCGATAGTGTGTCTTTCTAGTTATTGCTCGACTCGATAAATCTCATTC
AAATTCTTTCTNCTATGGTGATTTAGTATCTAATATGACTTGACTCGATA
GTGTGTCTTTCTAGTTATTGCTCGACTCGATAAATCTCATTCAAATTCTT
TCTCCTTAAGAATTAGTTTGTTACTCTCGTGTACCCAATAGTAATAATCG
GAAGTTAAAAAATATCTTGTTGTAAATAATCTTAACCTTTCCAGCACGCT
GTTTTTTATATTTTCACGCTGTCTACGCGCAACTTTTTTTGAGAAAACGC
GGGGTTTGGGAAATTTGCCATAATTCAAGAACTAGAAATCTTTTGGCAAA
AAGTAAACTATCCCTGAAAAGCTAATTAAGTTTTGCAGCTTTTAGGTTGG
GTACAAGTTCAATTAAAGTATTCTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00016375-exon-sc0000233-1575043694:328750..329172 | TCONS_00016375-exon-sc0000233-1575043694:328750..329172 | Clytia hemisphaerica | exon |
| TCONS_00016375-exon-sc0000233-1575043694:328065..328199 | TCONS_00016375-exon-sc0000233-1575043694:328065..328199 | Clytia hemisphaerica | exon |
| TCONS_00016375-exon-sc0000233-1575043694:327125..327609 | TCONS_00016375-exon-sc0000233-1575043694:327125..327609 | Clytia hemisphaerica | exon |
| TCONS_00016375-exon-sc0000233-1575043694:323048..324703 | TCONS_00016375-exon-sc0000233-1575043694:323048..324703 | Clytia hemisphaerica | exon |
| TCONS_00016375-exon-sc0000233-1510915933:328750..329172 | TCONS_00016375-exon-sc0000233-1510915933:328750..329172 | Clytia hemisphaerica | exon |
| TCONS_00016375-exon-sc0000233-1510915933:328065..328199 | TCONS_00016375-exon-sc0000233-1510915933:328065..328199 | Clytia hemisphaerica | exon |
| TCONS_00016375-exon-sc0000233-1510915933:327125..327609 | TCONS_00016375-exon-sc0000233-1510915933:327125..327609 | Clytia hemisphaerica | exon |
| TCONS_00016375-exon-sc0000233-1510915933:323048..324703 | TCONS_00016375-exon-sc0000233-1510915933:323048..324703 | Clytia hemisphaerica | exon |
| TCONS_00016375-exon-sc0000233-1491911889:328750..329172 | TCONS_00016375-exon-sc0000233-1491911889:328750..329172 | Clytia hemisphaerica | exon |
| TCONS_00016375-exon-sc0000233-1491911889:328065..328199 | TCONS_00016375-exon-sc0000233-1491911889:328065..328199 | Clytia hemisphaerica | exon |
| TCONS_00016375-exon-sc0000233-1491911889:327125..327609 | TCONS_00016375-exon-sc0000233-1491911889:327125..327609 | Clytia hemisphaerica | exon |
| TCONS_00016375-exon-sc0000233-1491911889:323048..324703 | TCONS_00016375-exon-sc0000233-1491911889:323048..324703 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000233 | supercontig | sc0000233:323048..329172 - |
Blast
BLAST of TCONS_00016375 vs. Swiss-Prot (Human)
Match: TGS1 (Trimethylguanosine synthase OS=Homo sapiens GN=TGS1 PE=1 SV=3) HSP 1 Score: 286.96 bits (733), Expect = 1.107e-82 Identity = 136/203 (67.00%), Postives = 159/203 (78.33%), Query Frame = 2
Query: 1664 GKYWAQRYRYFSRYDEGIQLDREGWFSVTPEKIAEHIAERC----QSDVVVDAFCGVGGNAIQFAFTCHHVIAIDIDPVRLECARHNARVYGVEDRISFILGDFFQLAPYLKADVVFLSPPWGGPDYISADVFDIETMMLPVGGTELFRYASMITGNVAMFLPRNVDVEQVIALTEPGRKVEIEKNLLNNKVKTIMVYYGDLV 2260
KYWAQRYR FSR+D+GI+LDREGWFSVTPEKIAEHIA R + DVVVDAFCGVGGN IQFA T VIAIDIDPV++ AR+NA VYG+ D+I FI GDF LA +LKADVVFLSPPWGGPDY +A+ FDI TMM P G E+FR + IT N+ FLPRN D++QV +L PG +VEIE+N LNNK+KTI Y+GDL+
Sbjct: 645 AKYWAQRYRLFSRFDDGIKLDREGWFSVTPEKIAEHIAGRVSQSFKCDVVVDAFCGVGGNTIQFALTGMRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLASFLKADVVFLSPPWGGPDYATAETFDIRTMMSP-DGFEIFRLSKKITNNIVYFLPRNADIDQVASLAGPGGQVEIEQNFLNNKLKTITAYFGDLI 846
The following BLAST results are available for this feature:
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