TCONS_00016384 (transcript) - C. hemisphaerica

Overview
NameTCONS_00016384
Unique NameTCONS_00016384
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length392

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00016384 ID=TCONS_00016384|Name=TCONS_00016384|organism=Clytia hemisphaerica|type=transcript|length=392bp
Ngagatgttaaaggttttcatgcagcaaaagtttttgtaaaatctctttt
cctctagatttgagagaaatttcaaatttgatcgccgttttgggggccac
atactgtaaggAAAAATAAATCTTACAATACGTTTTAAGCGAATAATATC
GCATATACATCTCCATGAATTTTTGAGTTGTAACTTAATTATGTGCATAA
TATATAAaagtgtaaaaatattttttttgaaataattttaagatatgaaa
tatttttgatgatttatTGTAAATATGTTCATAAAGAATTAATTTGACCT
TTTGTGGGATATTGTTTGATTTAACAAAGAAACGTTAATTACGGGTTTAA
TTTTAATTTCGCTGAAGCGTACTTTATTGGTCTTGGGTGGAG
Run BLAST on NCBI

transcript from alignment at sc0000233:66179..66570

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00016384 ID=TCONS_00016384|Name=TCONS_00016384|organism=Clytia hemisphaerica|type=transcript|length=392bp|location=Sequence derived from alignment at sc0000233:66179..66570 (Clytia hemisphaerica)
CTCCACCCAAGACCAATAAAGTACGCTTCAGCGAAATTAAAATTAAACCC
GTAATTAACGTTTCTTTGTTAAATCAAACAATATCCCACAAAAGGTCAAA
TTAATTCTTTATGAACATATTTACAataaatcatcaaaaatatttcatat
cttaaaattatttcaaaaaaaatatttttacacttTTATATATTATGCAC
ATAATTAAGTTACAACTCAAAAATTCATGGAGATGTATATGCGATATTAT
TCGCTTAAAACGTATTGTAAGATTTATTTTTccttacagtatgtggcccc
caaaacggcgatcaaatttgaaatttctctcaaatctagaggaaaagaga
ttttacaaaaacttttgctgcatgaaaacctttaacatctcN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009146XLOC_009146Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016384-exon-sc0000233-1491911889:66179..66570TCONS_00016384-exon-sc0000233-1491911889:66179..66570Clytia hemisphaericaexon
TCONS_00016384-exon-sc0000233-1510915933:66179..66570TCONS_00016384-exon-sc0000233-1510915933:66179..66570Clytia hemisphaericaexon
TCONS_00016384-exon-sc0000233-1575043694:66179..66570TCONS_00016384-exon-sc0000233-1575043694:66179..66570Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000233supercontigsc0000233:66179..66570 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.859362	0.443068	0.789294	1.25298	1.38661	1.34097	0.676184	0.915008	1.01921	1.76956	0	0.989123	0.899474	0.164041	1.04996	0.592854	1.32573	0.603345	0.455444	1.18268	0.791401	0.391517	0.780252	11.9234	5.7189	4.63724	14.5257	14.7332	3.83067	0.520561
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00016384 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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