TCONS_00016392 (transcript) - C. hemisphaerica

Overview
NameTCONS_00016392
Unique NameTCONS_00016392
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length378

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00016392 ID=TCONS_00016392|Name=TCONS_00016392|organism=Clytia hemisphaerica|type=transcript|length=378bp
tttttccttgATCAGGTGTCCACCACTCGTTGTTTTTCAACTGATTGCTC
ACCCTAATTATCCGATcataattcaaaatttcttggtTTTTCACACCTTG
GGTGTATGATATAAATTTAAAAGGTACATCTAAATCCTGAACTCCTTGTT
TAGCAACCAATTGTTTGTGTTTGTCAAAAAGGTGATTAATTTGAGTATTG
ATCAAGCGTTTTGATGTTTCATCAGAACCTTCTTTAGGTTGAAAATGAAA
ACTAATCCAATAGCTAATTGTATCAACAATCGAAAACGTATTTTGATGTA
ACTTAATACATTCGGTTTCAGACTGTTTTAGCCGACCTTCCAATTGGTCG
ATTCTTTTATTTGCTTCTTCCAGTTTTC
Run BLAST on NCBI

protein sequence of TCONS_00016392-protein

>TCONS_00016392-protein ID=TCONS_00016392-protein|Name=TCONS_00016392-protein|organism=Clytia hemisphaerica|type=polypeptide|length=125bp
KLEEANKRIDQLEGRLKQSETECIKLHQNTFSIVDTISYWISFHFQPKEG
SDETSKRLINTQINHLFDKHKQLVAKQGVQDLDVPFKFISYTQGVKNQEI
LNYDRIIRVSNQLKNNEWWTPDQGK
Run BLAST on NCBI

transcript from alignment at sc0000233:199780..200157

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00016392 ID=TCONS_00016392|Name=TCONS_00016392|organism=Clytia hemisphaerica|type=transcript|length=378bp|location=Sequence derived from alignment at sc0000233:199780..200157 (Clytia hemisphaerica)
GAAAACTGGAAGAAGCAAATAAAAGAATCGACCAATTGGAAGGTCGGCTA
AAACAGTCTGAAACCGAATGTATTAAGTTACATCAAAATACGTTTTCGAT
TGTTGATACAATTAGCTATTGGATTAGTTTTCATTTTCAACCTAAAGAAG
GTTCTGATGAAACATCAAAACGCTTGATCAATACTCAAATTAATCACCTT
TTTGACAAACACAAACAATTGGTTGCTAAACAAGGAGTTCAGGATTTAGA
TGTACCTTTTAAATTTATATCATACACCCAAGGTGTGAAAAaccaagaaa
ttttgaattatgATCGGATAATTAGGGTGAGCAATCAGTTGAAAAACAAC
GAGTGGTGGACACCTGATcaaggaaaaa

Coding sequence (CDS) from alignment at sc0000233:199780..200157

>TCONS_00016392 ID=TCONS_00016392|Name=TCONS_00016392|organism=Clytia hemisphaerica|type=CDS|length=375bp|location=Sequence derived from alignment at sc0000233:199780..200157 (Clytia hemisphaerica)
AAACTGGAAGAAGCAAATAAAAGAATCGACCAATTGGAAGGTCGGCTAAA
ACAGTCTGAAACCGAATGTATTAAGTTACATCAAAATACGTTTTCGATTG
TTGATACAATTAGCTATTGGATTAGTTTTCATTTTCAACCTAAAGAAGGT
TCTGATGAAACATCAAAACGCTTGATCAATACTCAAATTAATCACCTTTT
TGACAAACACAAACAATTGGTTGCTAAACAAGGAGTTCAGGATTTAGATG
TACCTTTTAAATTTATATCATACACCCAAGGTGTGAAAAaccaagaaatt
ttgaattatgATCGGATAATTAGGGTGAGCAATCAGTTGAAAAACAACGA
GTGGTGGACACCTGATcaaggaaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009154XLOC_009154Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016392-proteinTCONS_00016392-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016392-exon-sc0000233-1491911889:199780..200157TCONS_00016392-exon-sc0000233-1491911889:199780..200157Clytia hemisphaericaexon
TCONS_00016392-exon-sc0000233-1510915933:199780..200157TCONS_00016392-exon-sc0000233-1510915933:199780..200157Clytia hemisphaericaexon
TCONS_00016392-exon-sc0000233-1575043694:199780..200157TCONS_00016392-exon-sc0000233-1575043694:199780..200157Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000233supercontigsc0000233:199780..200157 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.237691	0	0.283099	0	0	0.252672	0.176902	0	0.425369	0.512774	2.96689	3.18984	0.596019	1.91886	0	0.677217	8.18127	5.88926	3.04455	1.78203	3.61048	2.84479	2.70468	1.60924	2.30282	4.91526	0	0.474787
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00016392 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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