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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00016404 ID=TCONS_00016404|Name=TCONS_00016404|organism=Clytia hemisphaerica|type=transcript|length=2193bp
caaactatacattttagGAAGcatatttggatgtagaataccgtattcgg
tgtaacttaatttttttctcagcagaatttgagtttttttaagaaaacgt
gattatgacgttattatttatgacgtcataattttaagaagttgaatatc
tcaagaacttaAGATGTCTCTAACTatactgagaaaaaaattaaaattct
gtTCATCCTTTTTAAAGAGTAACTTGGTAGGCTGACTCGCACACTCCCAT
CTcatagacccactggaaaaaattggccaaaatatcgttcctGGAGGAAA
ATGATCATCTAATTTTTGCCCTCgccaaaaataatcaaataaacaattca
tcactgcaaaataatttattattcttcccatccccactaaattttctgac
ttgaacacaaaagaattgaaatccccagccataaaaaatttGGGAATATC
AACCATCGAGcttttttctgttatttttatccccactggctgaaaaccCC
ACCGGGTCTGTTCCCGggggggttacttaggcaaaatgggtgccggctat
gtgcgagccataagggtaccttttctcattcctcaaaagtctctcaaagg
ggtacaaattcaaaagttagtctctgaaagggtcccaaaatcacgaaaat
caaaaatttctctctcaaagggtcacaatttccaaaaattttgagcaaaa
tttggtgaaaatcaaaccaaaattgggaaaaaatgaaccaaaatttagga
aaaagtctctcaaagggtcccaaaataaccaaaattttctctctcaaagg
gtcgattttcgattttcggctcggacatacccgtcacctcgcaaacctag
taccccccccgggggtcTGTTAGAAGGGGTTGTACTCGCAGCATAATGGA
TTATTTTCTAATCAATATGAGAATCGGTTACTTTCGAAATACAGTATAGA
AAGTCTTAGTGAATCACTTGAAATTTGAAGAAACAGAAGGTTTCAACAGA
AAACCGAAAAACATGATATTCTTCCATTAAAAAACGTGAGATTGAGCACG
AAGCTCTTTAGAAACAAACATTAAGTCGTCAATTTTTTCATGATGACGAT
GTATAAAACTTTGACTTTTTGTATGAACTTTCACTTTTTGTATGCAAGAA
CGTCCTCAAAGTCATGCTTCCTTCTTCCTACAGATGTCGTATAAAACAAG
ACTTTGAAGTTTATGTAGGATCAGTTGATAAAAAAGCAGGGAAGAAAGAC
ACACAAAGCAACTGCTGTGACTGTTTGATAGAAAACGTCTATCTAACTAA
CATCGTTGATTTGAAAGATCATTTCTTCGAGTAACAACTTATTTAtttgg
aatatatttttttttgcggATTTCATACCGAAGTCGCAAAGATGTCATTT
TTCGGAAAGGCACTGCAGCACAAAGAGaTTTATCCATTGTTGGGAGCGTG
TACATTTGCAGGAGGAATGGCAATATTTTGTGGAGTTCGAGCATGCCTGG
TCTACCCTGAAGTGACATGGAACCATAAATCAAATCCAGAACCGTGGAAT
GATATCAAACAAACAGATCAAGTGAAGATGTACCAGACATATGATTACAT
TACAAAGCAACCTAAAAGACCAGAAGCATCAAAATGAAACAAGACATTGA
TAGTTAGTCTCAATTAAAACACcgctttctcacagacccactgggaacct
ttcccactgaaaaaattgtctaaaaaatcgtccccggtcgAAAATTATcc
cccaatttttgtccccactgaaaataatcaaataaaccaatcctcactgc
aaaatattatgctatttttccaatccccgctgaattttctgacttgaaaa
caaaaaaattgaaatccccatCCCCAATCCCCATCAactttcagtccgtt
atttttaaccCCACTCgatgaaaaaatcctaccgggtctgtgagaagggg
gtgtaataaACCTGCAAGAGCCTACAAGTAGTGAGCAGAACAAATCTGCT
GTAACGCTGTCCAGATGACATGGTGGTGAGAATCCAACAAAATTGTGGCA
AAAGAATAATTTTGGATTAAATGCGTCACATTCTTTGGATTTTATGCAGA
TAAATCTATTTCTGTAtctattttctaattttatatAATATTGTAAATAT
AGATTGGAATCTTTAAATATATCAAGAACATCCAATGATCAAC Run BLAST on NCBI transcript from alignment at sc0000237:144620..148810+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00016404 ID=TCONS_00016404|Name=TCONS_00016404|organism=Clytia hemisphaerica|type=transcript|length=4191bp|location=Sequence derived from alignment at sc0000237:144620..148810+ (Clytia hemisphaerica)
caaactatacattttagGAAGcatatttggatgtagaataccgtattcgg
tgtaacttaatttttttctcagcagaatttgagtttttttaagaaaacgt
gattatgacgttattatttatgacgtcataattttaagaagttgaatatc
tcaagaacttaAGATGTCTCTAACTatactgagaaaaaaattaaaattct
gtTCATCCTTTTTAAAGAGTAACTTGGTAGGCTGACTCGCACACTCCCAT
CTcatagacccactggaaaaaattggccaaaatatcgttcctGGAGGAAA
ATGATCATCTAATTTTTGCCCTCgccaaaaataatcaaataaacaattca
tcactgcaaaataatttattattcttcccatccccactaaattttctgac
ttgaacacaaaagaattgaaatccccagccataaaaaatttGGGAATATC
AACCATCGAGcttttttctgttatttttatccccactggctgaaaaccCC
ACCGGGTCTGTTCCCGggggggttacttaggcaaaatgggtgccggctat
gtgcgagccataagggtaccttttctcattcctcaaaagtctctcaaagg
ggtacaaattcaaaagttagtctctgaaagggtcccaaaatcacgaaaat
caaaaatttctctctcaaagggtcacaatttccaaaaattttgagcaaaa
tttggtgaaaatcaaaccaaaattgggaaaaaatgaaccaaaatttagga
aaaagtctctcaaagggtcccaaaataaccaaaattttctctctcaaagg
gtcgattttcgattttcggctcggacatacccgtcacctcgcaaacctag
taccccccccgggggtcTGTTAGAAGGGGTTGTACTCGCAGCATAATGGA
TTATTTTCTAATCAATATGAGAATCGGTTACTTTCGAAATACAGTATAGA
AAGTCTTAGTGAATCACTTGAAATTTGAAGAAACAGAAGGTTTCAACAGA
AAACCGAAAAACATGATATTCTTCCATTAAAAAACGTGAGATTGAGCACG
AAGCTCTTTAGAAACAAACATTAAGTCGTCAATTTTTTCATGATGACGAT
GTATAAAACTTTGACTTTTTGTATGAACTTTCACTTTTTGTATGCAAGAA
CGTCCTCAAAGTCATGCTTCCTTCTTCCTACAGATGTCGTATAAAACAAG
ACTTTGAAGTTTATGTAGGATCAGTTGATAAAAAAGCAGGGAAGAAAGAC
ACACAAAGCAACTGCTGTGACTGTTTGATAGAAAACGTCTATCTAACTAA
CATCGTTGATTTGAAAGATCATTTCTTCGAGTAACAACTTATTTAtttgg
aatatatttttttttgcggATTTCATACCGAAGTCGCAAAGATGTCATTT
TTCGGAAAGGCACTGCAGCACAAAGAGGTAGGAGGTTATTTATAGGACCT
CCTTATAAGTTTTGGCTGCTCCAAATTTTTGTGATTTAAGACTTAGgtct
tggggacacgagaagtttgttcgcgttggtgcaatgcaacatgctccatc
ccaccaacctaaAACGCTTTCTAGTATCTCCACCCGATTTTTCTTtacca
aaaaaagtgaaatctcacttttgttcctgggacaatggagcaaaattgac
tcgATAAATAATTGTTTTAAACTGTTTTTAGTCCTAAATTCACAGGAAAT
CAACGAAATGGTTTTTTGGTGAACCGTGGGAAATTGAATCAATTAAATAA
CCTCAAACTCGAGCTCAGTCCCTCAGTTcgctttttataattttgatagc
ACCCACGAAACACTTTACGATTGTATCACGtctatcaataaaaacaaaaa
acggtgccaacattgagtttcaagcccaaagggctagaggaGAAACTTta
aacctttctcaggcaagagaaattgaagccacttattttccattcaaaac
gcgcatagaacgcgctgtaatcatgacgacggattgtatctagtggttcc
ttaccgtgaaaagcacaggtcgaaatcatataaaTTCTTAACCTTTGAAA
CTCAGGGTACTGGTTCCTTtcttttggaggactacatttttttgaaatct
agcgatagattttagtttcagcCCGGCGTTTGtgaaaaactacgcgcggg
cgttctggatgggagataagtggtttcatttcccatccatcAGGAGTCTC
TATGGGTGCTAAGTGGCTCTTGATACTAGATTGACATACTTtaacatttt
catttcattagaTTTATCCATTGTTGGGAGCGTGTACATTTGCAGGAGGA
ATGGCAATATTTTGTGGAGTTCGAGCATGCCTGGTCTACCCTGAAGTGAC
GTAAGTTTGATAATTTACTTAACTGAGAAATTCACTGAGATATTCGTGAT
ATTCACGACGTAATATTTTATATGGAAGCATCCAAAAAAAAACGGGTGAT
TGCCACCCAAACCACTCACCCAGTGGCAAACGCCTGAgctattttgggtg
cttccATATAAGATATCACTTACGTGTCATGAACATCATAAAAAACCGAA
GGCTAAAGGCGAATCTATACAAATTGCGATCCCCGCGAAgttaaacaata
aaatataatttgaaaaatttcaccatcatTATCTTGATCAGAAAATAGAC
GACGAAAGTTTTGATGTTAAAAAATTCTATATTTCGGTGTACATCTAACA
CATCTTTCaggagaaataaaattgaaattcacaaATCTGAATCTAATGTT
TAACGCGAAGTTACatcctttcttttgtttctcTTTGACCAGATGGAACC
ATAAATCAAATCCAGAACCGTGGAATGATATCAAACAAACAGATCAAGTG
AAGGTAAAACCGAGctgacgttgtttcaacgtttatttaacgttcacaac
gtccatataacgttagatgaatgttgaaacaacgttgtgtgccagctggt
aaAACCCCCTCATAACATTCGACCGTACGTAAGACCCTAGGGAggttaga
ctagtaaaccacgtcattgtatttcgctgcagcttAAGCTTGCAATGGGC
TCTATGTCTACGTTCAcaaaccactctcccgcggcaatttctattttcta
taagaactCTTTACAAGCACTATctgcgttcctgtgtccaaggaaagaca
gacgcttgctagtctataGGGAGGTTAGCCTGATGAGTAGTAAGCAGTAT
ACAGTCTCTGTTCCAAACTTAACCTCTAGCGGATGATAATTTCTAGCCTA
ATTCTGTCTTCacagtttcaaaatttgatcaATACAGTAAGAATTCATAC
CCTAGGATCAATGGCATCTTTTCTTTGAAGCAAATGCATGAATTCTTTTC
GAAAGTCACTTTCACGGGGAGGGGGATCCGTTGGCAAAAATTATTGTAAT
AACCAAAGTCTAATGTTGCAAGAAAAACTGTATAACGGGGAGAAATGTGT
AGTAGCTGCAGTACTGTTGAACTCACAGGTCATTTGTTACAAGGTGTAGC
TGACCAAATAAATCGACAACTAAACTAGCAAGTTAGCTTGATTTCTTTCA
ATTCGTTATGTATTTTCCACACTAGATGTACCAGACATATGATTACATTA
CAAAGCAACCTAAAAGACCAGAAGCATCAAAATGAAACAAGACATTGATA
GTTAGTCTCAATTAAAACACcgctttctcacagacccactgggaaccttt
cccactgaaaaaattgtctaaaaaatcgtccccggtcgAAAATTATcccc
caatttttgtccccactgaaaataatcaaataaaccaatcctcactgcaa
aatattatgctatttttccaatccccgctgaattttctgacttgaaaaca
aaaaaattgaaatccccatCCCCAATCCCCATCAactttcagtccgttat
ttttaaccCCACTCgatgaaaaaatcctaccgggtctgtgagaagggggt
gtaataaACCTGCAAGAGCCTACAAGTAGTGAGCAGAACAAATCTGCTGT
AACGCTGTCCAGATGACATGGTGGTGAGAATCCAACAAAATTGTGGCAAA
AGAATAATTTTGGATTAAATGCGTCACATTCTTTGGATTTTATGCAGATA
AATCTATTTCTGTAtctattttctaattttatatAATATTGTAAATATAG
ATTGGAATCTTTAAATATATCAAGAACATCCAATGATCAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00016404-exon-sc0000237-1491911889:144620..146046 | TCONS_00016404-exon-sc0000237-1491911889:144620..146046 | Clytia hemisphaerica | exon |
| TCONS_00016404-exon-sc0000237-1510915933:144620..146046 | TCONS_00016404-exon-sc0000237-1510915933:144620..146046 | Clytia hemisphaerica | exon |
| TCONS_00016404-exon-sc0000237-1575043694:144620..146046 | TCONS_00016404-exon-sc0000237-1575043694:144620..146046 | Clytia hemisphaerica | exon |
| TCONS_00016404-exon-sc0000237-1491911889:146881..146969 | TCONS_00016404-exon-sc0000237-1491911889:146881..146969 | Clytia hemisphaerica | exon |
| TCONS_00016404-exon-sc0000237-1510915933:146881..146969 | TCONS_00016404-exon-sc0000237-1510915933:146881..146969 | Clytia hemisphaerica | exon |
| TCONS_00016404-exon-sc0000237-1575043694:146881..146969 | TCONS_00016404-exon-sc0000237-1575043694:146881..146969 | Clytia hemisphaerica | exon |
| TCONS_00016404-exon-sc0000237-1491911889:147412..147472 | TCONS_00016404-exon-sc0000237-1491911889:147412..147472 | Clytia hemisphaerica | exon |
| TCONS_00016404-exon-sc0000237-1510915933:147412..147472 | TCONS_00016404-exon-sc0000237-1510915933:147412..147472 | Clytia hemisphaerica | exon |
| TCONS_00016404-exon-sc0000237-1575043694:147412..147472 | TCONS_00016404-exon-sc0000237-1575043694:147412..147472 | Clytia hemisphaerica | exon |
| TCONS_00016404-exon-sc0000237-1491911889:148195..148810 | TCONS_00016404-exon-sc0000237-1491911889:148195..148810 | Clytia hemisphaerica | exon |
| TCONS_00016404-exon-sc0000237-1510915933:148195..148810 | TCONS_00016404-exon-sc0000237-1510915933:148195..148810 | Clytia hemisphaerica | exon |
| TCONS_00016404-exon-sc0000237-1575043694:148195..148810 | TCONS_00016404-exon-sc0000237-1575043694:148195..148810 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000237 | supercontig | sc0000237:144620..148810 + |
Blast
The following BLAST results are available for this feature:
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