TCONS_00016406 (transcript) - C. hemisphaerica

Overview
NameTCONS_00016406
Unique NameTCONS_00016406
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2111

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00016406 ID=TCONS_00016406|Name=TCONS_00016406|organism=Clytia hemisphaerica|type=transcript|length=2111bp
GAAAAATTCCGCGAAAGCGCGCACACTCcattttcaagatggcggattcC
GAGGAGGGTGAAAGTGCATTTTATCGCTcaaaatcaagaagaaaaagaac
CCATAGTTATGGTTCAATGACAACTTCATGCGACGAAAATGATGACGATC
CTTCAGAACAGAAAGTTGGTGATATTACCATCACATTTTTCTACAAACCA
AGAACTTTGACAGCCCTAGCACTATGCATAATTGCTATGTTGTATTTTGC
TTTTGTaagaGATGCAGAACACAATCAGCATGATAATTTCTGGCATGGAT
GTCTTGGAGCATTGGCTTTATTTCTTGTCATTTGTCTTTTGATTTGCCCA
AATGGACCTTTCATTCGTCCACATCCTGCAATATGGCGTCTTGTTTTTGG
TATAAGTGTGGTGTATGCTATGTTCCTTGCATTTCTTCTGTTCCAAAGTT
ATAAAGATTTTCTGACCATTCTTCAATATTTTGATCCAAATCTGAAAGGT
GCTGAGCCTGATACAGAAGTTTACTCAGATGACTGCTCATGGTCCGTGTT
TGTTTCACGATTGGATATCTTTTGTGTGGCTCACTTCCTTGGATTCACTG
TCAAAGCCATTATGTTGAGAAATGCACATTTGCTCTGGCTCATGAGTATC
ACTTGGGAATTTACAGAGATTGCATTTTCTCACTTactggaaaatttcaa
agaatgtTGGTGGGATTCTCTTATTTTGGACATTTTGTTATGTAATGGTC
TTGGAATACATTTTGGTTTGTTTATCTGTAAAAAGTTGGAAATGAGAACA
TATTACTGGGAAAGTATCAAaGATCTCCATGGTGCATCAAAGAAATTCAG
AAGAGCTGTCATGCAGTTTACACCAGTCAGCTGGACATCAGTTCAATGGT
TCAATCCTAAAGATGTGAAGTCAAGATTCTTAGCTCTGTGTCTTTTGGTT
CTGATGTGGCAGGTTGCTGAGTTAAACACATTCTTTTTGAAGCATATTTT
TGCCATTCCAACACACCACTGGTTGAATGTGGCACGTATTGTTTTGATTA
GTCTTATCACTATGCCAACCACCagGCAATATTATTTATATTCAACTGAT
ACAAGATGTAAAAGGTTGGGAACTCAAGCTTGGGTTTTTGTTTGTATTAC
TTGCTTGGAAGCCATTTTATGTATTCGTCATGCTCGAGAACTTTTCTCAC
AAACACAATACACATGGGTGGCTGCTTGGGTAGCAGTAGAAAGTTTCGCT
TGCTTCATTCTGGTCTATGTTCTTATCATCTGGCGTGGAAAGAGAAAACT
TACTGACGGCAAAGTACCATCTAGAGTACCATCACATCTACGTTTCAAAG
AAGTGGACGGTCAAGAAAATACTGATACAGATTCAGAAGACTATGCTGAA
GATAAGAGAAGCTCATACTCAAGAAAGTCTTTGCGAACACGACGAAGGAC
AAAGAAAGAGTGaGTGTATGAGAACATTTAACTGATAGGTAATTTTCGAG
ATGATAAACATGTTGGTGCAGGCATACAAATTATGACACAATGTAATACC
AACTTTATTAAACATCAAGTTTTCACATTTTATTTATACCTTAAACAGAT
CATAGATAATTTATAATAGTATATACACTTGTATATgcactgatgatgtt
ttttaataaaacgaaaagcttatgctgaaaaatatttgtcgaaatgtttt
ttgaattaCAATGGaaaatcattagtttttttttgaaaattatattccag
catttttaacttattttcagGACTGATGTAAAAAATGCTCTTTTATCGAC
TagaaaaatttgataatttgGTAATTATAGCTAGGATACGTAACTTTACA
CAATTCACATATATTTATTTGAGGTTTTACCCCCCAAATCTTTATAATTt
cttttataatttctttgCGTATATAGTTTTGCCCTCACGTTTATCAATAT
tattgttgttatgatttttagtATAGTTTATATAttgtaaaattaatttt
ctaatGCTTTTGTTGccacaaattttttttagttAGTCAGTGTGGACACG
TTTCGATCTCATTTAAAGTGATTGTGATTTTCAATCTGTAACTTGTTTTC
TGGTGAAGGAG
Run BLAST on NCBI

transcript from alignment at sc0000237:169204..181125+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00016406 ID=TCONS_00016406|Name=TCONS_00016406|organism=Clytia hemisphaerica|type=transcript|length=11922bp|location=Sequence derived from alignment at sc0000237:169204..181125+ (Clytia hemisphaerica)
GAAAAATTCCGCGAAAGCGCGCACACTCcattttcaagatggcggattcC
GAGGAGGGTGAAAGTGCATTTTATCGCTcaaaatcaagaagaaaaagaac
CCATAGTTATGGTTCAATGACAACTTCATGCGACGAAAATGATGACGATC
CTTCAGAACAGAAAGTTGGTGATATTACCATCACATTTTTCTACAAACCA
AGAACTTTGACAGCCCTAGCACTATGCATAATTGCTATGTTGTATTTTGC
TTTTGTaaggtaaatattttttaatatccaGACGGTCACGTTGTCAATAC
AATAGAACGAATCGAACCCCAAATTAATTGAACACAATCAACGCNTGGGC
ACATTGTCAATACAATAGAACGAATCGAACACCAAATTAATTGAACACAA
tcaacgcaatcgaataattgtgattcgattgtcgaacgcaatcaaatcgc
aatagacctttttgagTTGCtgtggcagttacatcaaaatgcctcgaaaa
tgtcaatatgaaaattgcgtaatcagagaacgtatgtctcacTCATTATa
gaaaggccgagacaaactttcaataattggattgtaacatcgagttaagt
ctcttttgttaagtcaccagggggtaaataaaacagaccttgatacattt
atcgttcgNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNcaaagaaattc
atacttttccaacccggcgaatctttaaaaaagaagcgaacaataaaata
taattaccctttccaaataaacctcttcggtggcgagcgtaagtctactc
tgacgtaattgtaaaatttatgtgatgggaggttgacatagtaatgtaat
gtaatgttgtttggggaattatgaagttctctttcgattgcatttattca
ggttgattttttatgacttctaatggtactttttctaatgagtttgatta
ctctgttctcacacttatgtttttttttttcgcgtccttttccgtgatta
cttttatttatatttttaaagacaggtaagaacagtgcgtctcaaaccgc
gatatttcgagagcacggaagcgcgtcaaaacaccagcttttttaaagtt
ttgtctcgtttacccaaacgctgcaatcctgcgtaggctttgggctcaag
actagaacccccaatacgagacattggcctgaccgaaaaaaaatcatcat
caNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATTGTG
GAAGggaacgcttgagacgaatgtttgggaaatcaaaaagacaacttttg
tgagaatgttgagttttgtttatatggctgtttgtgtcGCACtgaagaag
gcatattgatgtaactgtgtGGTGGTGCATAAGATTTCATTCATTACatt
ttggaaaatatgcaaaacctatttaaaaagaaagtatcaatataaaactt
acatgcataattggcattataccttgaagtcgggtaacttgcatcagtgg
agggaaacttgcataccCCTCAAATGAATGGCCTGTCTGGTCATCATTAA
ATACAAGGTTGAATACGACCGACGGCATGGCCTCTttattaatacttttt
aaaaatggcccgcgcgtaggacccaatatttatattttaaattccttatt
ttagcaaacaaatttaaaaatcttcatcttgattcaaatatatattgttc
aaatataaaagttaatcatatattttccaattaagttaggaaaattatta
aaaagaatgatttgaatcttacataatatggtcttctttttattcttcat
cccgttcccttttctcgtggtcttctcctattcgaagcagaatttttctg
gatcgttttttgtactgttatacaactttgtgaatcaaactggtatttgg
aactttgaatttgtctaatgaaaatatttaacaatggatgatgataaacc
aggaaaggtaaataaaatttaaattctACTATTCCTATGAATGACctgaa
catggtccgaacaacatgttcgggccgattcaataatacttttttgtggc
ccgagcatggtccgaacaggcccaAACATGTTcaggccatgccgtgggtc
gtggttaaatcaaacaaaatggtagagtagagctgcgagaggagctgcgt
agttcatttgttttgaaattttgctactTTAAGTGGGCATTTGATGGCTA
CGCAAGTTTccttccactgatgcaagttacccgacttcacagtattgaag
tgtaatcttgtagaagaaagggGTCACTCACGTATCACGCGTGTTCCAAA
agacaaaacaatggaaatgagTCAATCCGTTCAGCTGAccaaaatgacac
aaaaatgacaaaatgaccTGTCAAGACATTCtaatatctttttgtttggt
aaagcaaccaatttcaaataaaaagtatcTTGACAAGGAATAAATAAGTT
TTTCATATAGCCAAACAGAATTACCATAGCTTTACCAAAAATAATATATC
AAAGATtcaatttcagccatttttagCCAAATCCAACTTTTGTTCTTACT
GGGGCTTCGTGGAAACTTATCCTGTCCATGTGTAAACATTCCCGTATCTT
TGTTATGTACCGttagtggtcctaaatccgacagccctgcctaaatccga
ccccccaaataactgctatgaaaaaaaattctatgtttagaaaCATTCCC
TCTCtgagttgaacaataaactatattgcaagaactctcgaagcaaaaca
tctaacaagatgactaaaatgtcaagatgtcaattaattaatgtgataaa
aagtGTGAGTTAAAATAATTACCTATATTATTCTGAATCcattgctcgtg
tttaaaacgttaataattttgtaataaaaaattatgttttgtataagaag
caattaatgttttggttcaattggttcagtgtatcaaatctctcagttta
gttgacactttggtNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNTTGACTACCCGTTGTCAAACCGGGATAAGACAGGGGTA
CtgcaataaaaagttatgcaagAAAAACCATAATTTCGACCTCAAAAGGT
GACTTTCTttgccaataacttttgatagaattgttCCCGTAATTTCCCCC
TTTCAGTAGGTCTTCCTCTATCTTATATATGctttagaaaaaccaaaaac
attgcccACGAAGCCCCAGCTAATAATATAACCCCCTGGTTATATCTTTG
TATTCTTATCCTATAAATATAACGGAACGGCCATTCTACGGAAATTGCTG
TCACGTGACTTTTTTCTACCGTGTGATACAAATTGCGCATTTTCATTGGA
TGTTGAAAATTTATACAAAATGGCGAAAGGacgttttttttatgtttatg
attattgaaagaattcagttgattttaaggttttaattatttctttttct
tttgccatgtgtactaaaagatTCTACAATGTTTGTGGAACTCAAATATC
Caaaagtttttctctttttcatggaaaaatgagctataaaggcaatttct
ttgcttaaggtttgttttttcttcgtgaattttcattttcaatctttctt
tgcttaaggtttgttttttcttcgtgaattttcattttcaatctttcttt
aaagatttaatattttatcaattatcTTGGGTTTTTCAGGGTTTATTCTA
GGACTGTTTGGGAGTAGAGAGCTTTTTACAGATCTTAATAAAAAAGGTTT
ACTAATTCTTTAGATATAGTCAAAAGTTTAGACATTGGTAAAACTTATTT
CTCCGATCGAACATTGACACACGCATTTCAAAATTAGACACGCGTGTTGG
GTGGGGGGGTGGTGCTGTAACCCCCCACCAATGTGTCCAGGGCTAAGCTc
tggtgggggggggggttcagggggCGAAGCTTTGACTTGCATCAATATCT
TATATCTGTTCCTTACACCAATAAGCCGAAAGTAATTACTGCCTCATCCC
AAActttattttgctaaaatttccacatcagaaatttttaaactatctgc
cattatgactttctcgAAGCCAATCTGAAATTAATTCCTTATGGAGTTCT
TTTcagagatttgtaaaatagctaagttggCAAAGAAACTTTCCCcaggg
gtttgaggaaaaagcagaaaaaactgGCGTCATTTGTTATTTATTAgcaa
tatatttaaatttgtgcTGTCACATGCTTAAAATGtttgtgcaaggcact
gagaggccacgtttgccaaaaagaagggccatgTGTGGccatgtacctta
ttggtaCGTAGAAATATGATAACAGTTCGCGAAGAAGTGTCagaaagcaa
tcagtagaagagaccacttttgtttttgcaggtttttgttgtagatttca
atataaacttctcacagggattacttgtcaataaCTTAGAATAGCTTTCT
AAAGATTGCCGGAACAGCGGATAATTGCtggaaaaacagtttttctggAG
TTTCTCGAGctgttctttatatttttcatcaCCAATAACCCCTCTTAACA
AAATAGATAAAGGTACTTGTAATAATTAAAAGTGTCTGAAACAGATTTCT
GTCTCATCAAAGTACAAAAAGAGGATTTTCTTTCTCTGCAATCTAAATAG
CTGAAAAATTAGCTCTAATATGCTGagtaaatttaaaaataaatttgtgc
tATGATCCTAGAGATGGGATTGTTGGGATTGCTATGAAAAGACGTTtcct
tttgatgaaaattgatTCCCAATCATTGATTCcaactttcttcttttcat
aTCTATAAACAACATTAGACCAGCTTACAACACATTCTATTCTATACAGT
TGCCACATTTTGCATTGAATAAACACGGGGATGCAAAAATAGTCTGTATT
GAGCaggaatttttcttttcatagaGATGCAGAACACAATCAGCATGATA
ATTTCTGGCATGGATGTCTTGGAGCATTGGCTTTATTTCTTGTCATTTGT
CTTTTGATTTGCCCAAATGGTATGTtggattttttttgataaaacagaGA
ACAAAGTGTTGTTTTTGTATTAGAATCCAACTTGTTCCTTCATAATAGTT
ATAGCTGTATTTTTTTNATGTTGTTTTTGCATTAGAATCCAACTAGTTCC
AAAAATTTGTATCTTCATCACAGATCTTCATAATAGTTATAgctgtattt
tttttcaatacatAATGCAATTCGATTACCACTTTCACTTTATTAACTAT
TTTCAGGACCTTTCATTCGTCCACATCCTGCAATATGGCGTCTTGTTTTT
GGTATGTTTTGTTCATTAATTTTCTCTACTTGAAATTAAATAACCAGCCA
TTCTTGAAAGGCTAATTTTAATGTTTAGATTTGTTCACCCTACCTATGGT
GCAATCACAATGATTATGCAAGAATAACAGCTAACCTTCGCTTCAATGAT
AAATCTTTAATATGAGGGATCTAAACTGAAACAGTAAACAAATGCCTGTG
ATTTATTATCCCACAGAATTTTCTTAGGCAGAAAGAAACTTACCAACAAT
GGCTCTACTTTGTCATTTTAGGTATAAGTGTGGTGTATGCTATGTTCCTT
GCATTTCTTCTGTTCCAAAGTTATAAAGATTTTCTGACCATTCTTCAATA
TTTTGATCCAAATCTGAAAGGTGCTGAGCCTGATACAGAAGTAAGTAAAA
ATGTTTTCAGAAGAAAATAATGTTCAGAGAAACTCAACCTTAATAAAGGT
CAATCTTCAATTGATCTTTTACCTTGATTTGCTTGTCAATATTAACATca
taaacaacaacaacaaacttcAAGGTCATATAGTATTCACCTAGTTATAT
TTATGCAATGGTTTGAGATAATTATATAAGGCAACAAAGAATCACTTGGA
TAAAACCTTCTCAAGCCCAGTTGAGCTAAGACTGTCCCTTCTGACATGGA
AGGTGCTACCTGCATACATTATTTAATTACAAAGTTGCCTCCTTCAGGTT
TACTCAGATGACTGCTCATGGTCCGTGTTTGTTTCACGATTGGATATCTT
TTGTGTGGCTCACTTCCTTGGATTCACTGTCAAAGCCATTATGTTGAGAA
ATGCACATTTGCTCTGGCTCATGAGTATCACTTGGGAATTTACAGAGGTA
TTTCAATATTGAGCTTTTTCGTTTTTATAGGTTTCACAAGGAAACCTATT
AAGGCTGATTGTTAAAGGGTTCaatctcttttgaaatttttaaaagttca
aTTTAAAATTCTGTTCAagttatgtttttaaaatcagCTTAGGTAATCTA
CTTGTCCTCTCTCTCTTTTTTATAAATGGTTGCTGTATTTCCATTATTAG
TTTAAATTTAAAGAggaattctttttgttttttatacttACAGATTGCAT
TTTCTCACTTactggaaaatttcaaagaatgtTGGTGGGATTCTCTTATT
TTGGACATTTTGTTATGTAATGGTCTTGGAATACATTTTGGTTTGTTTAT
CTGTAAAAAGTTGGAAATGAGAACATATTACTGGGAAAGTATCAAGTATG
GAGAGTAATATTTTAGAGACCCCCTTTTGAAATTCCTCTTTCAGGAAAAT
TATTTGTTCCACACCTTTgtctttttgagaaatttttctttgtttcctGT
GAATCTGTGTGAATCAGCATGCTTTACCATTAATTTTAATTCAGGCACTG
GCAAAActaatataattttttataagattcttTGATAGGATAACTGCAAA
GGAGTATTGAAGATGGAGCAAGGCACATAGAGATGGGATCaaacttttaa
tattttatctaATTTTTCCCAATCAGCCTGGTATTAGTTTAATtgatcaa
ctttttttttgaaaaaaacttcagaGATCTCCATGGTGCATCAAAGAAAT
TCAGAAGAGCTGTCATGCAGTTTACACCAGTCAGGTTAGTTAAACTTAAT
CTTTTGGGTATATACCCATCTTGCAAAAGGTATAACACAAAAAAAACTAG
ACATGCATTGAACAAGATATTTTGTCTCTAGGGGCTAGTtacatttgaaa
ttaaaaaagatttattaagaaaataattttgaaaatgtacTTTCCTAACT
TTTAAGCTGGACATCAGTTCAATGGTTCAATCCTAAAGATGTGAAGTCAA
GATTCTTAGCTCTGTGTCTTTTGGTTCTGATGTGGCAGGTTAGAGAGACA
AATATTTATTTTAGAGGGAGATTTAAACTTATGTGGATCTTTTACTTGAG
GGAAAAAATGCTCATGTTGTTTTAGTAATCTAAGGTTCTAAAGTTTGGCA
GCTTTGTGATATAAAAATTGTTGGTAAAGTAAAGTGATGAAAAGTATGTG
CCTAATAACTGAACGTTTTAACTGCATTTTCTCTACGTCAAAATCTTTAC
AAGACAAACAGCATAACAGATTGTTGACCTGCACCGTTACGTTGACAGCG
ACGACATTATGTCTTTTCAGACGTCGTCTTGTTTAAGAAACATGAATGTC
GGGTTTTAAGGCGTCACAGTTAACTTGACGTATGTTTATGAAACCGACAA
TTTCGTTCACCCATTATCATGAAGGTGCCTAAAGTTTGTTATCTGGAAGA
AAACATTTTCGATCAAGGCCAGATAAGTCACATTAAAAAGATTAAGACTA
ATGATAAATGTTTCTAATCCTGTCTAATCTGGAGTTTAGATTAATTGCGG
TCCATTTATTGCCAATCCAAGCAATGATACTTAAAATCCCTTGATCTCTT
ATAGGTTGCTGAGTTAAACACATTCTTTTTGAAGCATATTTTTGCCATTC
CAACACACCACTGGTTGAATGTGGCACGTATTGTTTTGATTAGTCTTATC
ACTATGCCAACCACCaggtaaaaatatattttaccgATCTTCTTATGtat
caggccatttttcatgccctttaaaCGTCCAgttatcggacgctgcccct
cttgaaattactaaaatattgataaaaacagCCTATTTAGTGgaaaaaac
actggaaaaagtgccctttttggccaccaatGGTCAATGCCgcgcctttc
taaaatatgggcTGTGTATAGCTCAAATTTATCCAGTTGTCAaacttttt
atcaataattGCATTTATAAAGAAGCTTAAAAAATGCTGCTATTAAATTT
TGCCTATTAAGTTTTGATAGGTTCTTTATTTCGTATGGACAAGATACAGT
CATTTTCGGCTGATGTGCTTATGATGATGTAGCTTTGTGAAGCctgaaat
ctttcaaaactttctttgaaaactttcaaaagtcTTCTGCTTTATTGTTT
TCCAGGCAATATTATTTATATTCAACTGATACAAGATGTAAAAGGTTGGG
AACTCAAGCTTGGGTTTTTGTGTAAGTTTATACTCTCATAATGTAAGCAT
ATCAAGTTCTTTATCAATCTGATACTGATATTTTCTAAGGGGCAATTGAC
AATTGCCCCTTGACAATAACAACACCTTCCTCACAGACGATTACACCTGG
GTGATCaaccccttggaaaaaattccaGGCTCAACAAAATGTTAATTGAA
TCGTATAAAAAAGACCGtgtcaatttttgataaaactcAGTCTGttcaca
ttttttatatttcttccTAATATGACTTTTAACGTAACAGAATGACAAAC
AAATCAAATTTCCTTGACTGatcaatctttttgtttttcagcaAACGCTT
ACCCAACTTTTTGGTTTGATTTGAACCAACGTTTTAAAGTTTCTCCCTGG
TAATTGTTCCTGAGAGGAAATTGTCTGCGCAGGGCAACTGTCCAGAGAAc
aattattttgagattgacagtcaatgaaaaatattgaatatgggccaaat
caatgttttttgacctaTTAGTTAGTAGTGATTGTCCTGTGGGGCAATTG
TCCTGTCAAGTATTGATATAGTCGTAgctttatatttatatttatatcaA
ATATTTGATTCAGTGACATAAATCATTATGCAAAACTGTAGTACTTTAAA
GCTACCAGAATTAAAAGCCACCCTGGGGATCAAGAGTTTTAAGTTCATAA
CATTAGGTGTAGTGCTCCTAGGTCCAGACCAGAAAGAAATCtgatgtttt
tgtttaaaagtaaTGACATATCATCTCATTAAAATGAATTTATCATAACT
TTGCTTTTAGTTGTATTACTTGCTTGGAAGCCATTTTATGTATTCGTCAT
GCTCGAGAACTTTTCTCACAAACACAATACACATGGGTGGCTGCTTGGGT
AGCAGTAGAAAGTTTCGCTTGCTTCATTCTGGTCTATGTTCTTATCATCT
GGCGTGGAAAGGTATCAATTTCTCATATCCCACAGTTGATGCCACTGGAA
TCTTTATATTGTATTTTCACCTTGTTTTTCATGAAACACAAAGCTTATTT
CAGTTTATTCCGCCTCATTCAAGTGCCTTAATCAGTGAAATAGAATTTAA
ACTCTACTGAAAGGTTCATAAAAAGTCAACCTGTATTAGTTGATAATTTA
AAGTGCTGTTAGACTGATATTTGAGGTCATTTTCAGAAAAGGTTAGATGA
ATTAGCAAACAACTGTCTCACATACTTCCATATAAGTGACAttgttttac
tttaaatttcCAGAGAAAACTTACTGACGGCAAAGTACCATCTAGAGTAC
CATCACATCTACGTTTCAAAGAAGTGGACGGTCAAGAAAATACTGATACA
GATTCAGAAGACTATGCTGAAGATAAGAGAAGCTCATACTCAAGAAAGTC
TTTGCGAACACGACGAAGGACAAAGAAAGAGTGGTAAGCAAAACTGGGTA
TTGTTAATTGATAGAGATGTTTTGTATGCTTGTGAAACTTTTTTAAGTAG
CGTTGTGGATTGATCTTTACCAGGAGAAACAAATCAACGACTAGAATATT
AAAATtaaagttggtatcgataccaattttagTGGTTGTAGTGTAGGTTT
TGAGGCATAGTAAGCAGGAGATTTATTCTTTGTGACTTTGCCCAATAAAA
GGGCTGCTGAGAGTGGCTGGCCCTAGTTTAATTTCCTAATTAATTTTCCT
AGTTTAATTTCCTAGTTTGATTTTAAGCCTGATATCTTTTTATAACTAAT
TGaatgttttcatttcatttcagaGTGTATGAGAACATTTAACTGATAGG
TAATTTTCGAGATGATAAACATGTTGGTGCAGGCATACAAATTATGACAC
AATGTAATACCAACTTTATTAAACATCAAGTTTTCACATTTTATTTATAC
CTTAAACAGATCATAGATAATTTATAATAGTATATACACTTGTATATgca
ctgatgatgttttttaataaaacgaaaagcttatgctgaaaaatatttgt
cgaaatgttttttgaattaCAATGGaaaatcattagtttttttttgaaaa
ttatattccagcatttttaacttattttcagGACTGATGTAAAAAATGCT
CTTTTATCGACTagaaaaatttgataatttgGTAATTATAGCTAGGATAC
GTAACTTTACACAATTCACATATATTTATTTGAGGTTTTACCCCCCAAAT
CTTTATAATTtcttttataatttctttgCGTATATAGTTTTGCCCTCACG
TTTATCAATATtattgttgttatgatttttagtATAGTTTATATAttgta
aaattaattttctaatGCTTTTGTTGccacaaattttttttagttAGTCA
GTGTGGACACGTTTCGATCTCATTTAAAGTGATTGTGATTTTCAATCTGT
AACTTGTTTTCTGGTGAAGGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009165XLOC_009165Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016406-exon-sc0000237-1491911889:169204..169462TCONS_00016406-exon-sc0000237-1491911889:169204..169462Clytia hemisphaericaexon
TCONS_00016406-exon-sc0000237-1510915933:169204..169462TCONS_00016406-exon-sc0000237-1510915933:169204..169462Clytia hemisphaericaexon
TCONS_00016406-exon-sc0000237-1575043694:169204..169462TCONS_00016406-exon-sc0000237-1575043694:169204..169462Clytia hemisphaericaexon
TCONS_00016406-exon-sc0000237-1491911889:175278..175372TCONS_00016406-exon-sc0000237-1491911889:175278..175372Clytia hemisphaericaexon
TCONS_00016406-exon-sc0000237-1510915933:175278..175372TCONS_00016406-exon-sc0000237-1510915933:175278..175372Clytia hemisphaericaexon
TCONS_00016406-exon-sc0000237-1575043694:175278..175372TCONS_00016406-exon-sc0000237-1575043694:175278..175372Clytia hemisphaericaexon
TCONS_00016406-exon-sc0000237-1491911889:175610..175654TCONS_00016406-exon-sc0000237-1491911889:175610..175654Clytia hemisphaericaexon
TCONS_00016406-exon-sc0000237-1510915933:175610..175654TCONS_00016406-exon-sc0000237-1510915933:175610..175654Clytia hemisphaericaexon
TCONS_00016406-exon-sc0000237-1575043694:175610..175654TCONS_00016406-exon-sc0000237-1575043694:175610..175654Clytia hemisphaericaexon
TCONS_00016406-exon-sc0000237-1491911889:175925..176043TCONS_00016406-exon-sc0000237-1491911889:175925..176043Clytia hemisphaericaexon
TCONS_00016406-exon-sc0000237-1510915933:175925..176043TCONS_00016406-exon-sc0000237-1510915933:175925..176043Clytia hemisphaericaexon
TCONS_00016406-exon-sc0000237-1575043694:175925..176043TCONS_00016406-exon-sc0000237-1575043694:175925..176043Clytia hemisphaericaexon
TCONS_00016406-exon-sc0000237-1491911889:176351..176500TCONS_00016406-exon-sc0000237-1491911889:176351..176500Clytia hemisphaericaexon
TCONS_00016406-exon-sc0000237-1510915933:176351..176500TCONS_00016406-exon-sc0000237-1510915933:176351..176500Clytia hemisphaericaexon
TCONS_00016406-exon-sc0000237-1575043694:176351..176500TCONS_00016406-exon-sc0000237-1575043694:176351..176500Clytia hemisphaericaexon
TCONS_00016406-exon-sc0000237-1491911889:176747..176898TCONS_00016406-exon-sc0000237-1491911889:176747..176898Clytia hemisphaericaexon
TCONS_00016406-exon-sc0000237-1510915933:176747..176898TCONS_00016406-exon-sc0000237-1510915933:176747..176898Clytia hemisphaericaexon
TCONS_00016406-exon-sc0000237-1575043694:176747..176898TCONS_00016406-exon-sc0000237-1575043694:176747..176898Clytia hemisphaericaexon
TCONS_00016406-exon-sc0000237-1491911889:177228..177287TCONS_00016406-exon-sc0000237-1491911889:177228..177287Clytia hemisphaericaexon
TCONS_00016406-exon-sc0000237-1510915933:177228..177287TCONS_00016406-exon-sc0000237-1510915933:177228..177287Clytia hemisphaericaexon
TCONS_00016406-exon-sc0000237-1575043694:177228..177287TCONS_00016406-exon-sc0000237-1575043694:177228..177287Clytia hemisphaericaexon
TCONS_00016406-exon-sc0000237-1491911889:177460..177541TCONS_00016406-exon-sc0000237-1491911889:177460..177541Clytia hemisphaericaexon
TCONS_00016406-exon-sc0000237-1510915933:177460..177541TCONS_00016406-exon-sc0000237-1510915933:177460..177541Clytia hemisphaericaexon
TCONS_00016406-exon-sc0000237-1575043694:177460..177541TCONS_00016406-exon-sc0000237-1575043694:177460..177541Clytia hemisphaericaexon
TCONS_00016406-exon-sc0000237-1491911889:178108..178220TCONS_00016406-exon-sc0000237-1491911889:178108..178220Clytia hemisphaericaexon
TCONS_00016406-exon-sc0000237-1510915933:178108..178220TCONS_00016406-exon-sc0000237-1510915933:178108..178220Clytia hemisphaericaexon
TCONS_00016406-exon-sc0000237-1575043694:178108..178220TCONS_00016406-exon-sc0000237-1575043694:178108..178220Clytia hemisphaericaexon
TCONS_00016406-exon-sc0000237-1491911889:178659..178724TCONS_00016406-exon-sc0000237-1491911889:178659..178724Clytia hemisphaericaexon
TCONS_00016406-exon-sc0000237-1510915933:178659..178724TCONS_00016406-exon-sc0000237-1510915933:178659..178724Clytia hemisphaericaexon
TCONS_00016406-exon-sc0000237-1575043694:178659..178724TCONS_00016406-exon-sc0000237-1575043694:178659..178724Clytia hemisphaericaexon
TCONS_00016406-exon-sc0000237-1491911889:179514..179664TCONS_00016406-exon-sc0000237-1491911889:179514..179664Clytia hemisphaericaexon
TCONS_00016406-exon-sc0000237-1510915933:179514..179664TCONS_00016406-exon-sc0000237-1510915933:179514..179664Clytia hemisphaericaexon
TCONS_00016406-exon-sc0000237-1575043694:179514..179664TCONS_00016406-exon-sc0000237-1575043694:179514..179664Clytia hemisphaericaexon
TCONS_00016406-exon-sc0000237-1491911889:179967..180136TCONS_00016406-exon-sc0000237-1491911889:179967..180136Clytia hemisphaericaexon
TCONS_00016406-exon-sc0000237-1510915933:179967..180136TCONS_00016406-exon-sc0000237-1510915933:179967..180136Clytia hemisphaericaexon
TCONS_00016406-exon-sc0000237-1575043694:179967..180136TCONS_00016406-exon-sc0000237-1575043694:179967..180136Clytia hemisphaericaexon
TCONS_00016406-exon-sc0000237-1491911889:180477..181125TCONS_00016406-exon-sc0000237-1491911889:180477..181125Clytia hemisphaericaexon
TCONS_00016406-exon-sc0000237-1510915933:180477..181125TCONS_00016406-exon-sc0000237-1510915933:180477..181125Clytia hemisphaericaexon
TCONS_00016406-exon-sc0000237-1575043694:180477..181125TCONS_00016406-exon-sc0000237-1575043694:180477..181125Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000237supercontigsc0000237:169204..181125 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
7.44498	6.52805	2.99085	3.73242	17.0582	13.6178	12.3507	9.70155	9.02845	7.31354	7.19571	7.66349	4.86866	4.20502	7.02693	8.28951	11.3532	7.25245	3.20983	3.80519	4.30897	3.03644	8.2183	6.80102	4.10236	4.21164	3.08419	2.3471	7.06695	5.19481
Blast
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BLAST of TCONS_00016406 vs. Swiss-Prot (Human)
Match: PTSS1 (Phosphatidylserine synthase 1 OS=Homo sapiens GN=PTDSS1 PE=1 SV=1)

HSP 1 Score: 387.497 bits (994), Expect = 2.877e-126
Identity = 208/439 (47.38%), Postives = 284/439 (64.69%), Query Frame = 3 
Query:  111 GSMTTSCDENDDDP-----SEQKVGDITITFFYKPRTLTALALCIIAMLYFAFVRDAEHNQHDNFWHGCLGALALFLVICLLICPNGPFIRPHPAIWRLVFGISVVYAMFLAFLLFQSYKDFLTILQYFDPNLKGA--EPDTEVYSDDC---SWSVFVSRLDIFCVAHFLGFTVKAIMLRNAHLLWLMSITWEFTEIAFSHLLENFKECWWDSLILDILLCNGLGIHFGLFICKKLEMRTYYWESIKDLHGASKKFRRAVMQFTPVSWTSVQWFNPKDVKSRFLALCLLVLMWQVAELNTFFLKHIFAIPTHHWLNVARIVLISLITMPTTRQYYLYSTDTRCKRLGTQAWVFVCITCLEAILCIRHARELFSQTQYTWVAAWVAVESFACFILVYVLIIWR---GKRKLT-----DGKVPSRVPSHLRFKEVDGQENT 1373
            GS T S D+ +        +EQ+V DITI FFY+P T+T L+  I++++YFAF RD +    DN W G L  +  FL+I +L  PNGPF RPHPA+WR+VFG+SV+Y +FL FLLF +++   +++ + DPNL+ A  E D   Y+ +C   +W   +S  DIF   HF G+ +KA+++R+  L W +SITWE TE+ F HLL NF ECWWD +ILDILLCNG GI  G+ +C+ LEMRTY+W S KD+H  + K +RAV+QFTP SWT V+WF+PK    R   + L +++WQ+ ELNTFFLKHIF     H L+  RI+ I  IT PT RQYY Y TDT+CKR+GTQ WVF  I  LEAI+CI+  ++LFS+TQ  +V  W+   +F  F+ +Y +I +    G R+ T     DG     +  H R K   G E++
Sbjct:    6 GSRTLSKDDVNYKMHFRMINEQQVEDITIDFFYRPHTITLLSFTIVSLMYFAFTRD-DSVPEDNIWRGILSVIFFFLIISVLAFPNGPFTRPHPALWRMVFGLSVLYFLFLVFLLFLNFEQVKSLMYWLDPNLRYATREADVMEYAVNCHVITWERIISHFDIFAFGHFWGWAMKALLIRSYGLCWTISITWELTELFFMHLLPNFAECWWDQVILDILLCNGGGIWLGMVVCRFLEMRTYHWASFKDIHTTTGKIKRAVLQFTPASWTYVRWFDPKSSFQRVAGVYLFMIIWQLTELNTFFLKHIFVFQASHPLSWGRILFIGGITAPTVRQYYAYLTDTQCKRVGTQCWVFGVIGFLEAIVCIKFGQDLFSKTQILYVVLWLLCVAFTTFLCLYGMIWYAEHYGHREKTYSECEDGTYSPEISWHHR-KGTKGSEDS 442
The following BLAST results are available for this feature:
BLAST of TCONS_00016406 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PTSS12.877e-12647.38Phosphatidylserine synthase 1 OS=Homo sapiens GN=P... [more]
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