TCONS_00016428 (transcript) - C. hemisphaerica

Overview
NameTCONS_00016428
Unique NameTCONS_00016428
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1937

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00016428 ID=TCONS_00016428|Name=TCONS_00016428|organism=Clytia hemisphaerica|type=transcript|length=1937bp
GTCAGTAATGTTCACAAAACACTACACTCACAAAGAAAATAACATActga
acaaaataaaaccaaaacttcatcaaaacctttttttttgaaatcgaatG
ATGGATGAAGCGAAGCAATTACGGAAAAGGGTGGACCAGTTCTATGGGTT
CGTAGTGCATTGGCTTCCCGAACTGTATTCTGGGATATCAACGCCCTCAT
CGGATGGAGGAAACAATGACTTGGACGAGGGGTTGAATATTGTTGAAGAC
ACGTTCGCAGATTCACCAGCCACCAGTTTTGGTTGGGAGAAAATAAACAC
AGAAGATGCAGAGAGCATGAAGAAACTACGTGTGGACAGCATCCAATCAT
CTTCCAGTAAACTTTCATTGAGGAGTTTGGATGACGAACCAGAAACATCA
GCTGAATCACAACTCCTCACCAAAGATCAACTCAAATATCTTGTCCGAAG
TTTACCCTCAATCACTGTGGGTCACATGATGGAACTCGTTTATAGTACGT
CTGTCCATGGCATTTCACTGAAAACGTTGTACCGTAATTTCGAAGATTTC
GACACGACAGCACTCATTGTTGTGCGTGATGAAAATCACAGGGCGTTTGG
CGCTTTTCTTTCACACCCTCCAGCCATCAGTGAGAGTTTCTATGGCACCG
GAGAATGTTTGCTTTTCTCTTTCATCACCGAGAAGAAAGTCAAGACGTAC
AAATGGTCAGGCGAAAACAGTTTCTTCATCAAAGGCTCCAAGACAAGTTT
GACTGTTGGTGGTGGACTAGGTGTATTGGGCTTATGGTTGGATGAAGATC
TCTACCATGGTCGCACGCACGCTTGCAGTACCTTTAATAACGAACTGTTG
TCTGAAAACGAAGATTTCATTTGCACCGGTCTGGAGGCGTGGGCGTTTGT
ATGAAAAGGCTTTAAGGCGTTTATCAAGATTTTTGATTGGTGCATGGAAG
GAATGGTGCCCCAAGCTTTTACCTCTGCAGAAGTAAACAATCTGTGCTAG
AGAGAGAGAAAAGGAGCCGGTGCTTCATCGACCATTGGCATCAGTTCGAA
CCTAACCGATCTTCTTGGACTCTGAGTTGTTCAACAAAATATCAGTATAC
AATAGTGAGATCAGTTGAGAGCATGGATACTTAGATTTCAAGGTTTGTTG
ACCTGTCAACAGTGACTCGAAAACATCAAAGAACTGTTTTAATCTTACGT
AGATCGTTGCTTCAATCAATTTTGGAGTATCGAATGGAGTTTATTATACA
ATAATGTAAACCTACACTTTAATCTATCATTGAGTATGGCGATTTTAAAT
TCACCTCTGAAATATCGACCTTTTTGTACGTTTGTTGGCAACAACCAAAC
TGTCATGGGAGAATTCTTATCCTACTGTTATCAATAAGAAACTCTACCTT
CGTCGTGTAGAAAcaatgaattattttttgaatttttatatacATAATGA
AGTTAATATCATCATTTAGAATTTAATATATCGTAAAATAACATAACAGA
CAAATGGGAATTGATCCCtcaatttttttgtattgtAATTTAAGAGTAGT
GAATTACCAACTGAAAACGCCAGATAATACGCAAGGAACGAGGTTGGTAT
TCACAGATATCGTCCCACAATCAACTGGATGCTAGTAAAGACCTTCAGCA
TTATTCAGAAGATAGTGGGCGAACCTTTACAGTGATAACAGCAATTGATA
CTTTGTAGTTGCAATTGATACTTTGTAGTtgtgtttttctcaaatttcag
aCAACACTTCTCAATATTCTCATAACAGACATATAGTTATCGAGGAGATC
GTATCGTTTTTACCGTCATATACAGAGCAGAGTAATTTCGACTTATCTTG
GTCGTCgttctaatagaccttttcataaattacgtcacgaacattactct
taggttccaaataaacgggggtgttcgaataaacggg
Run BLAST on NCBI

transcript from alignment at sc0000237:76233..84117-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00016428 ID=TCONS_00016428|Name=TCONS_00016428|organism=Clytia hemisphaerica|type=transcript|length=7885bp|location=Sequence derived from alignment at sc0000237:76233..84117- (Clytia hemisphaerica)
GTCAGTAATGTTCACAAAACACTACACTCACAAAGAAAATAACATACTGA
ACAAAATAAAACCAAAACTTCATCAAAACCTTTTTTTTTGAAATCGAATG
ATGGATGAAGCGAAGCAATTACGGAAAAGGTAGATATAGGATTTCCTTCG
TTGTTTCGACGTTCATCTAACGTCCACACCAGCTTGAGGGTTTGTTCTAA
GTACTTCAACCCCCCCCCCCACCAAAGTTTCCTTCAAGATGTATACTATC
AATCCATTTATCTAGGGAGAACCATTATCGTTAACAGAAATAAATGTTTA
ATACTGAATGCTTTTCTGTTATTTCTCGACTTGTTTTTGTTTTTTTGTTT
TGAGAACTGTATGAAGAGTAGTGTTTGTTGTCTCACAGCCCGGTGAAACT
TTTTTCCTCATTGGGGATAAAAATTCCTAGAAATTCTATTTTTCAAAGGT
TAAAAAATCCAGTGGGGATGGTTTTGGTGTGCAATTTTTAAACATTTGAT
TTCGAGTGGGGGTGAAATATAAGTCAATTTCCCAGTAAGGCAAAAATTGT
AGGGTATTTTCCTACGAGGGACTAAATTTTTGCCAGATTTTCCAGTGGGG
CTGGGGTCCCAACGGGTCTGTGACACAGGGGTATGATAACGATTAAAACC
AATAACGACAATCCTCCAGAATCGAAAAACTATGGCGTGCTCTTAAAAAT
GCACCCATATTTCTGCATTTCACTCTCACTAATTCAAACCCAAGGGAAAT
ATAAGGTGTTCGAATTTAAGAATATTGGAAAATATTTGATGAGGGTTCCT
CCTTTGACAGTTAGTTCAAATCATAACATGATTCGATTTCATGATATTCA
TGACGTAATGTTTTCTACGGAAAGACAATACAATTAATACAACTTTTGTC
TAGTTTTAATTTGCCACTACTGGCTAAAACCGGGGTATTTGCGTAGAAAA
CATTACGCCATGAATATCATGAATAATAAAAATTTGAATTATTTCACTGT
AATGAAATCAACCAACTCTTTCGTACATTTTATACAATTAACTCTTTTCA
ATTTTGTATTCACAGGGTGGACCAGTTCTATGGGTTCGTAGTGCATTGGC
TTCCCGAACTGTATTCTGGGATATCAACGCCCTCATCGGATGGAGGAAAC
AATGACTTGGACGAGGTACAGAAAATGATTTTTGAATCTAATCTTATCGC
AGCCACTAAAGGAGATCTTCATATTTTGGACATACCGTCTTATACGCTGA
AAATATTTCAAAGAGTGATCCTCAAAGGGATAATCAGATGGTTAGAGATA
TATTGCCTGAACAAACCCTATGTGGTTTTGAGTAAGACCTCCAAGTATGT
TTGGGTAATTATTTTCCAAAGAAATATCACAATTTGAAATTTCTGAAAAT
GGGTTTTCACACGGTTGTTAAGTTGAAATTCTATTGTTTTCTTACTAAAA
GTCAAAAACTTGTATTTTAAATATCTCGACTTTGGAAAATATTTAGGTAA
AAATATTTTGAGGATTTACTCAGGACAATAGAAAGATTACACATGCCAAA
TATCTCAAACCATCTGATTATCCCTTTAAATTTTTTCATCGTGGTGATCT
CTACTGTAAATACTCGGTAGCGTTCTATCCCCTTCCATTTAAATTTTTCA
GGCTAATTGAATTTTATACTTACTGGTAAATTTGCTTTATCAGAGCTTTT
ACTTGCAAATCTTTCCAATCAAAAAGTACTGCCATTTCAGATGAATTTCC
ACAATCACTAAGCTAACAATTATAACTGTCCGTCTTTTCTCAGTGAGTTT
GTGTAAAATCGATGATGGGGGTGTCTTTTTGTGTATTTTGTAGAAAATAC
ATTGTATATGAGCTTAATATGCCTCCTTTTTTCACAGGGGTTGAATATTG
TTGAAGACACGTTCGCAGATTCACCAGCCACCAGTTTTGGTTGGGAGGTA
TGTCCGCCATTTTTGTTTGTTCCTTTTTGTTAGTTATAGTGAAATTCAAA
GAAGACTTTTTTTTTCCAAAGATATTTGAAGATGAATATTTGTTTTGAAT
TAGATGGTTATTTCTTAGTTAGCTATTTCTATTTGGCGTAATAAGGGTGC
CAAATTCGGTTTGATGGGGCGATGGGGGTACAAAAACTCGGTTTGATGGC
GCGATGAGGGTGCAATATAATAACATATTATCCTAACCATAGGATGGTGT
TTATAAGGTTATAAAGTGTAATAAAAAATTTCACTTTTTCACTATTCATT
CGAGATATTCATTTGAGAGAGTTGTTTTTTTCTTGTGAATATTTATTATT
AAGTTTTAGAAGATAGAGTAGCACGAACAGTCTTTTGATGTGTAGTGTAG
TATCAAGTGTTTTCATAGAAAAATAGACAATGCGAGATATTCGTTAACTT
GTTTCAAGCTCTAAATGCGAGATATTCGTTAACTTGTTTCAAGCTCTACG
GAATGGGAACAAGCTGGAGTTTTTACAAGCTCTTATTTGATTTGGTTGGC
CGTTAAGATGTTAAGAATTTTGGTTGGCCGTTAAGAATCTTATTGCTTTT
TCTAAAGAACGCGTCATCTCTATCACTTTAAATGACCAATTAGTGAAGTA
TCTTGTAAAAACTCCAGCTCATCCCACGGAATGCCGACGGACAAAATGAC
GCGAACGACGCGAAGCGTAGATCTCATCAGCACATCAACCCAGTCTATTT
TCCATATTTTTGAAAGCAATTTTCCATTTTCCGCCGGTTATCCCGGGGAA
AAGCAACGCCAAGCCGCGAGTGGAAACTCAAACGGGATATGTAGCGAAAC
TTGTTGTTTCTAATGAAGTGATCAGTATAATCCATGTAGTTAGTGATAAT
TGCTCCGTAACCAACCATTAACCAGTCTGTCGATAAAAACTTAATTAAAT
TACCATGAGGATAACATGCGTCATTCTCAGACACAGTATATGAGAAATAA
AAACTGATCTTAGTGAAGTTTAGCCACACGTTTTTTTTTGTGAGAACAAA
CTATATAAGAACACAAGGTTTCGATGGCCGTATTGTTAAGAGCATTTTAA
GGCTTTTTAGACCCTAAAACACCCAATTTCTTAGGAAAATGGACAAAAAT
ACTTAAAAGATGGTGAAAATAAGAACATGTTAAGAACAATGTTAGACTTA
AAACTCAAAAAGTTAAGAACATCCGAAGTCTTCAAAATTTTTGGATGTTC
TTATAAAAAAAGTGTACTTAGTTTACATCAAAGTCTGAAATGAATTCAAT
TCTTGTTTTCATTGTTTTTCGCTCTTGTAGTTTTATTTGTATATGTTAGT
AGCGGGCTTGATTCCTGTAATGGGGGTTTTGTGTTCGAATCCCGTACAAA
TTAGCCTGGGGGCCACTTAAAGCTTTTCTGGACAACGTTGATAAGAAATC
GGTCGTAATATGACTTTAATTTTTGGCTTTGCATGAACTCGCAGTAATTC
AATACCACTAGATCCAGTTTTTTGAAAACGAAAGTGAAACAATGCCAAGA
TGTTGGAATCTTCTAGTCTACTTCACTTTACTCAGCCCCATAAAAATTAT
CAGAAAGCAAAATTCAGTTAGAAGTAAACACTTATCAACATTCAAATCAA
CAATTATTGCCCTTACCTAGGTTACGGCCCGCCCGGATCACATAATTATT
TCAGACTCTATCGTTAGTATCGTATACTACGTACGTAGGGAGTGAATTCG
AAGCTTAAAATAAAATTGTTTAAAAAAGAATGTCAACTAATTGTAACCTC
ATTGTAGATTTCCATAACTTCAAATGCTGAAATCATCATTTTCTCACCTT
GTTACCATAGAAAATAAACACAGAAGATGCAGAGAGCATGAAGAAACTAC
GTGTGGACAGCATCCAATCATCTTCCAGTAAACTTTCATTGAGGAGTTTG
GATGACGAACCAGAAACATCAGCTGAATCACAACTCCTCACCAAAGATCA
ACTCAAATATGTAAGAATTTTTACCTTATAAGGGAAAAATGTCGGGGGGG
GGGCACGAAAGTTTGAAAGGATAAGGAATTTTCCCCGACTAATTAAAAAA
CTTAAACGTTATTTTCCCGATAATGTATGACGTTCTTATGTTACAAGCCT
AGCATTGACGTCAATTTCTAGGGGGCTAAAAATATTTAATAAAAGAAGGC
ATCCCATTTTGCAGTCAAAATGATCAAAGTCCGAAAATTTAGAACGCCAT
GAGACTATTTAACTGTTTTTTTTTTCTTTGACAAAATTCCAACATGTTTG
GTACTCTTTTTTGTCTAATTGAGCCCCTATAAAAAATCAACCCAATATAA
TATTTCGAAATTCATAGGCGTAGAATGATAAGTTCCTTGGATAAATGTGG
GATTAGGTTGCAGAGTAGGTTATCATTTTGCCTGTACCAGGACCGCGGCT
TTTTCCTCAACACCGTCCCGTCTGTAACTTTTTACAATTATTTTCCCAGA
GATTCGTGGGGGAATAAAAATTCTTGGCTTCAAGCAAAAGAAACGTGAAG
GAATAACTTTGGGATTAATATCTTTTATTTCTATATTTCATCAAGGATTC
TAACGACGTTATAAATCCAAATCGCGTGTTCGGATAGAGATGAGAGAAGC
TAGTTATCATTCTCGTTGTATAAAATCTTTCTTCTCTTCTTCCACAGCTT
GTCCGAAGTTTACCCTCAATCACTGTGGGTCACATGATGGAACTCGTTTA
TAGTACGTCTGTCCATGGCATTTCACTGAAAACGTTGTACCGTAATTTCG
AAGATTTCGACACGACAGCACTCATTGTTGTGCGTGATGAAAATCACAGG
GTATGTTCGTTTTATATAACTTTGTAGAGAGGGATTGGGTTCTAGTTTAC
TAAGATCGTAGAACGATCGCTTTTAATTTGAACACGCACGGGTAACACAA
ATTTGTTCGAGTTATGAGTATTTCAAGATGTGTGGCATTGTTATTTGACC
AATAGACCATGAAAATTGTTCGAGTTAAGGAGAGCTATATTCGAGCTATA
GAGGTTCGAGTTAAGGAGAGCTATATTCGAGCTGTATAGGTTCGAGTTAA
AGCAAAACCACTGTACGTATTGGTGCATCGGTGTCATAACTCTTGACATT
TTTGACCCTAATAAAGTTACCCTTGATAATTACATTTCATCGGGTCATCG
ATCGGATCCTTTTGAATTTGAATACGGTTGAACTTCAGCAGTATTACTAA
CCTGACCTTAGAACTGGAATGAAAATTTTACTTTAGATAGCTTTGACCAC
TTTACGTATTCTTACTTTTTCCCAATTTCAGGCGTTTGGCGCTTTTCTTT
CACACCCTCCAGCCATCAGTGAGAGTTTCTATGGCACCGGAGAATGTTTG
CTTTTCTCTTTCATCACCGAGAAGAAAGTCAAGGTAGGCTATATGTTTTG
TTTTCTCATGAAACTGTAAGAGTATTTTCAAAGTTTTGAGGTTACTAGAA
TCCTCTTTCTGAGCTAAATGAATGGTCGATATTTTTGCGTGGAAAGCCCA
ATAATTTTAAGAGTTTGAGCAGATTCTTTGATAGTTTCCCAGTCCGAGGC
AAGCTTAAGGTTCCCTTAAAGATTTCGTAAATTGCGTCACGAGCAACGCT
TGCCTCGTTTTCAAATATTGCTATGGTAACCGACTCCCAGAGGAGTTCAT
AAGATGGACTACTATTTCTAACAGTAACACTTGACGACATGACATAATCA
ACTTGGCAATGGTTTCAAAACGAGGCATTTGTTGTCCTCAAAATAATTTA
TGAAAATGCCTAGCTGTTAACAAAACAGAACAGACTCAAGTTTCTAAAAT
TCTTTGTTGTTTTTAACTTAAATCTGAGTTCTCGTGAAAAGAATTAATTT
CAAACTTCATTCTCATTTTTTTCTTCGCTTNACTTAAATCTGAGTTATCA
TGAAAATAATTAATTTCAAACTTCATTCTCATTTTTTTCTCGCCTTTTCA
GACGTACAAATGGTCAGGCGAAAACAGTTTCTTCATCAAAGGCTCCAAGA
CAAGTTTGACTGTTGGTGGTGGACTGTGAGTTATTCTCATTTCTAAATAT
TATATATTCTTTCCAATTGTGTAGCTCGTTAGGTTAAGAACTTAGATATA
TATCACTAATTCCCACAACGCTTAGAGTTTATTGTCTTGTATACTGCAGT
GGAAAAAAAGCGTTTTTTTTACAGTCGTATATCATTTTTTTCGGACATAC
TGTATGCACCACTGGTCTCTAACTACTTGACTTGATTGAGCTTCCCCTAC
AAAAGGAAGTGTGTCCAGTTAAAGAGCTGACTAGAAAGTAGACATTGAAT
GTTTTGAAATACGAACGCTCGAAAAACAACATGGCGGACTAGTCGGCCAT
GAAACTGGACATTCTTCCACGGGAAAGCCTATCTACAATCAGTTTTTGGC
TAATTTACCATTTTTCGAAAATTGAAGTTCGAGCGAGAATGTCAATTTTT
AGGCCTTCAACTTGATTTCATCGATTATTTCGATATGGGAGGGATTTATT
GGTTTCAAGGCTATTTAAGTCTAGCGTTAAAACTCAGTGTTAAAACTCTA
CCCTTCGAACCTACTTTAGAGCACTTACAAATCGATTGTGGTTTCAAAAC
ACCCCGGTGAATTTCCCTTTTGCGCCAAGTATTTTGTCACTGATTGTAGT
ATGTAAAGTATTATATCTGTGATACGTACTCACTCACTAAACTTATCTTC
ACATTCTAACTTTCAGAGGTGTATTGGGCTTATGGTTGGATGAAGATCTC
TACCATGGTCGCACGCACGCTTGCAGTACCTTTAATAACGAACTGTTGTC
TGAAAACGAAGATTTCATTTGCACCGGTCTGGAGGCGTGGGCGTTTGTAT
GAAAAGGCTTTAAGGCGTTTATCAAGATTTTTGATTGGTGCATGGAAGGA
ATGGTGCCCCAAGCTTTTACCTCTGCAGAAGTAAACAATCTGTGCTAGAG
AGAGAGAAAAGGAGCCGGTGCTTCATCGACCATTGGCATCAGTTCGAACC
TAACCGATCTTCTTGGACTCTGAGTTGTTCAACAAAATATCAGTATACAA
TAGTGAGATCAGTTGAGAGCATGGATACTTAGATTTCAAGGTTTGTTGAC
CTGTCAACAGTGACTCGAAAACATCAAAGAACTGTTTTAATCTTACGTAG
ATCGTTGCTTCAATCAATTTTGGAGTATCGAATGGAGTTTATTATACAAT
AATGTAAACCTACACTTTAATCTATCATTGAGTATGGCGATTTTAAATTC
ACCTCTGAAATATCGACCTTTTTGTACGTTTGTTGGCAACAACCAAACTG
TCATGGGAGAATTCTTATCCTACTGTTATCAATAAGAAACTCTACCTTCG
TCGTGTAGAAACAATGAATTATTTTTTGAATTTTTATATACATAATGAAG
TTAATATCATCATTTAGAATTTAATATATCGTAAAATAACATAACAGACA
AATGGGAATTGATCCCTCAATTTTTTTGTATTGTAATTTAAGAGTAGTGA
ATTACCAACTGAAAACGCCAGATAATACGCAAGGAACGAGGTTGGTATTC
ACAGATATCGTCCCACAATCAACTGGATGCTAGTAAAGACCTTCAGCATT
ATTCAGAAGATAGTGGGCGAACCTTTACAGTGATAACAGCAATTGATACT
TTGTAGTTGCAATTGATACTTTGTAGTTGTGTTTTTCTCAAATTTCAGAC
AACACTTCTCAATATTCTCATAACAGACATATAGTTATCGAGGAGATCGT
ATCGTTTTTACCGTCATATACAGAGCAGAGTAATTTCGACTTATCTTGGT
CGTCGTTCTAATAGACCTTTTCATAAATTACGTCACGAACATTACTCTTA
GGTTCCAAATAAACGGGGGTGTTCGAATAAACGGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009175XLOC_009175Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016428-exon-sc0000237-1575043694:83989..84117TCONS_00016428-exon-sc0000237-1575043694:83989..84117Clytia hemisphaericaexon
TCONS_00016428-exon-sc0000237-1575043694:82953..83052TCONS_00016428-exon-sc0000237-1575043694:82953..83052Clytia hemisphaericaexon
TCONS_00016428-exon-sc0000237-1575043694:82171..82230TCONS_00016428-exon-sc0000237-1575043694:82171..82230Clytia hemisphaericaexon
TCONS_00016428-exon-sc0000237-1575043694:80158..80307TCONS_00016428-exon-sc0000237-1575043694:80158..80307Clytia hemisphaericaexon
TCONS_00016428-exon-sc0000237-1575043694:79318..79470TCONS_00016428-exon-sc0000237-1575043694:79318..79470Clytia hemisphaericaexon
TCONS_00016428-exon-sc0000237-1575043694:78735..78836TCONS_00016428-exon-sc0000237-1575043694:78735..78836Clytia hemisphaericaexon
TCONS_00016428-exon-sc0000237-1575043694:78093..78166TCONS_00016428-exon-sc0000237-1575043694:78093..78166Clytia hemisphaericaexon
TCONS_00016428-exon-sc0000237-1575043694:76233..77401TCONS_00016428-exon-sc0000237-1575043694:76233..77401Clytia hemisphaericaexon
TCONS_00016428-exon-sc0000237-1510915933:83989..84117TCONS_00016428-exon-sc0000237-1510915933:83989..84117Clytia hemisphaericaexon
TCONS_00016428-exon-sc0000237-1510915933:82953..83052TCONS_00016428-exon-sc0000237-1510915933:82953..83052Clytia hemisphaericaexon
TCONS_00016428-exon-sc0000237-1510915933:82171..82230TCONS_00016428-exon-sc0000237-1510915933:82171..82230Clytia hemisphaericaexon
TCONS_00016428-exon-sc0000237-1510915933:80158..80307TCONS_00016428-exon-sc0000237-1510915933:80158..80307Clytia hemisphaericaexon
TCONS_00016428-exon-sc0000237-1510915933:79318..79470TCONS_00016428-exon-sc0000237-1510915933:79318..79470Clytia hemisphaericaexon
TCONS_00016428-exon-sc0000237-1510915933:78735..78836TCONS_00016428-exon-sc0000237-1510915933:78735..78836Clytia hemisphaericaexon
TCONS_00016428-exon-sc0000237-1510915933:78093..78166TCONS_00016428-exon-sc0000237-1510915933:78093..78166Clytia hemisphaericaexon
TCONS_00016428-exon-sc0000237-1510915933:76233..77401TCONS_00016428-exon-sc0000237-1510915933:76233..77401Clytia hemisphaericaexon
TCONS_00016428-exon-sc0000237-1491911889:83989..84117TCONS_00016428-exon-sc0000237-1491911889:83989..84117Clytia hemisphaericaexon
TCONS_00016428-exon-sc0000237-1491911889:82953..83052TCONS_00016428-exon-sc0000237-1491911889:82953..83052Clytia hemisphaericaexon
TCONS_00016428-exon-sc0000237-1491911889:82171..82230TCONS_00016428-exon-sc0000237-1491911889:82171..82230Clytia hemisphaericaexon
TCONS_00016428-exon-sc0000237-1491911889:80158..80307TCONS_00016428-exon-sc0000237-1491911889:80158..80307Clytia hemisphaericaexon
TCONS_00016428-exon-sc0000237-1491911889:79318..79470TCONS_00016428-exon-sc0000237-1491911889:79318..79470Clytia hemisphaericaexon
TCONS_00016428-exon-sc0000237-1491911889:78735..78836TCONS_00016428-exon-sc0000237-1491911889:78735..78836Clytia hemisphaericaexon
TCONS_00016428-exon-sc0000237-1491911889:78093..78166TCONS_00016428-exon-sc0000237-1491911889:78093..78166Clytia hemisphaericaexon
TCONS_00016428-exon-sc0000237-1491911889:76233..77401TCONS_00016428-exon-sc0000237-1491911889:76233..77401Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000237supercontigsc0000237:76233..84117 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0.388772	6.72845	6.55115	24.1503	1.71648	10.0249	4.88269	11.3228	8.15541	4.07263	10.106	19.8727	43.1312	8.49568	12.2223	2.66384	3.57372	0.21508	8.80346	24.24	16.8836	3.57573	1.89711
Blast
[Close]
BLAST of TCONS_00016428 vs. Swiss-Prot (Human)
Match: OXR1 (Oxidation resistance protein 1 OS=Homo sapiens GN=OXR1 PE=1 SV=2)

HSP 1 Score: 163.696 bits (413), Expect = 3.514e-42
Identity = 110/285 (38.60%), Postives = 154/285 (54.04%), Query Frame = 2 
Query:  122 RKRVDQFYGFVVHWLPELYSGISTPSSDGGNNDLDEGLNIVE-----DTFADS--PATSFGWE------------KINTEDAESM-KKLRVXXXXXXXXXXXXXXXXX------EPETSAESQLLTKDQLKYLVRSLPSITVGHMMELVYSTSVHGISLKTLYRNFEDFDTTALIVVRDENHRAFGAFLSHPPAISESFYGTGECLLFSFITEKKVKTYKWSGENSFFIXXXXXXXXXXXXXXXXXXWLDEDLYHGRTHACSTFNNELLSENEDFICTGLEAWAF 898
            ++R D  Y F + W PE+Y+       D G    + G  +V+     +T  DS   A +  WE             +NTE+  ++ ++L++ + +  +SK       D       P  S  S+LL  DQ++ L + LP  T+G+   LVY T  HG SLKTLYR     DT  L+V++D + + FGA  S P  +S+ FYGTGE  +F+F  E +V  +KW+G+N FFIKG   SL  GGG G   LWLD DLYHGR+H+C TF N  LS+ EDF    +E WAF
Sbjct:  597 QERTDHLYAFFIQWSPEIYA------EDTGEYTREPGFIVVKKIEESETIEDSSNQAAAREWEVVSVAEYHRRIDALNTEELRTLCRRLQITTREDINSKQVATVKADLESESFRPNLSDPSELLLPDQIEKLTKHLPPRTIGYPWTLVYGTGKHGTSLKTLYRTMTGLDTPVLMVIKDSDGQVFGALASEPLKVSDGFYGTGETFVFTFCPEFEV--FKWTGDNMFFIKGDMDSLAFGGGGGEFALWLDGDLYHGRSHSCKTFGNRTLSKKEDFFIQDIEIWAF 873
The following BLAST results are available for this feature:
BLAST of TCONS_00016428 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
OXR13.514e-4238.60Oxidation resistance protein 1 OS=Homo sapiens GN=... [more]
back to top