|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00016431 ID=TCONS_00016431|Name=TCONS_00016431|organism=Clytia hemisphaerica|type=transcript|length=3814bpRun BLAST on NCBI transcript from alignment at sc0000237:76233..97314- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00016431 ID=TCONS_00016431|Name=TCONS_00016431|organism=Clytia hemisphaerica|type=transcript|length=21082bp|location=Sequence derived from alignment at sc0000237:76233..97314- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00016431 vs. Swiss-Prot (Human)
Match: NCOA7 (Nuclear receptor coactivator 7 OS=Homo sapiens GN=NCOA7 PE=1 SV=2) HSP 1 Score: 193.356 bits (490), Expect = 3.807e-50 Identity = 127/321 (39.56%), Postives = 177/321 (55.14%), Query Frame = 1
Query: 1834 DIEPRPTAEFQDPLIYISIKVSKRYWCPTLQKHNAIMGVPPNRDQKRRQHWFAIPREKVDQFYGFVVHWLPELYSGISTPSSDGGNNDLDEGLNIVE-------DTFADSPATSFGWEKINTEDAESMKKLRVXXXXXXXXXXXXXXXXXEPETSAESQLLTKDQLKYLVRSLPSITVGHMMELVYSTSVHGISLKTLYRNFEDFDTTALIVVRDENHRAFGAFLSHPPAISESFYGTGECLLFSFITEKKVKTYKWSGENSFFIXXXXXXXXXXXXXXXXXXWLDEDLYHGRTHACSTFNNELLSENEDFICTGLEAWAF 2775
DI P + + P +++ IKV K + H A M + +K+ ++WFA+PRE+VD Y F V W P++Y G + ++G +VE D F P T WE I E+A+ K S+ S + P S LL ++ L R LP+ G+ L YST HG SLKTLYR D+ L+V++D +++ FGA+ +HP S+ +YGTGE L++F KV +KWSGENS+FI G +SL +GGG G GLWLD DLYHGR+++CSTFNN++LS+ EDFI LE WAF
Sbjct: 643 DILPSKEEKSKTPPMFLCIKVGKPMR-KSFATHTAAMVQQYGKRRKQPEYWFAVPRERVDHLYTFFVQWSPDVY----------GKDAKEQGFVVVEKEELNMIDNFFSEPTTK-SWEIITVEEAKRRK--------STCSYYEDEDEEVLPVLRPHSALLENMHIEQLARRLPARVQGYPWRLAYSTLEHGTSLKTLYRKSASLDSPVLLVIKDMDNQIFGAYATHPFKFSDHYYGTGETFLYTFSPHFKV--FKWSGENSYFINGDISSLELGGGGGRFGLWLDADLYHGRSNSCSTFNNDILSKKEDFIVQDLEVWAF 941 The following BLAST results are available for this feature:
BLAST of TCONS_00016431 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2025, MARIMBA.