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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00016433 ID=TCONS_00016433|Name=TCONS_00016433|organism=Clytia hemisphaerica|type=transcript|length=389bp
GGGATCCGCGAGAAAGAAGGTGAACCGCAAATGGACTGGGAGAGCTTTGA
TTTCAACCCAGATGCGTACCCTGTGCCTGGTGCCTCTGCTGCCTGGTGAC
AAACTTTCAGTTAATATTTCTTGAGgaAAAATGGATCAAACAAAGCGGAG
TCAATTTGTCAACATCACAATCAATACGGACTGCTTTCACTAAACTCAAG
AAGTGCGCAGCTGTGCCACCACCAATGTTACCGATTGTTACCATTATGAG
CTGTTCAGGGAGAGCGTGTTGCTTGAGagtgacgaagaagaaaataagag
ccacttttttattaaatttaacaatgtattaaaaattaaaatgaggccat
tgatcattaaaatcaaattaagaaaatatagagtgtaac Run BLAST on NCBI transcript from alignment at sc0000237:114584..117513- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00016433 ID=TCONS_00016433|Name=TCONS_00016433|organism=Clytia hemisphaerica|type=transcript|length=2930bp|location=Sequence derived from alignment at sc0000237:114584..117513- (Clytia hemisphaerica)
GGGATCCGCGAGAAAGAAGGTGAACCGCAAATGGACTGGGAGAGCTTTGA
TTTCAACCCAGATGCGTACCCTGTGCCTGGTGCCTCTGCTGCCTGGTGAC
AAACTTTCAGTTAATATTTCTTGAGGTATATTTTCATAGGATCCTGAAAA
TTAGACATTACCTTACCTTTGATTACCTTTGATGTGTTTCAGCAAATTCT
CTGCTCACTCAACCCGTGGGGTCCGGTGTTTGACCATTTCAACAATTGAA
TTCGAGTCAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCGATCCAAT
CAAAATATCGACCGTTTTTTTATATTGATTAATCGATGCATATCGATCTA
ATGGCGTCAAACCGGATTTACTTATCGGTACTTAAAATAAAAATTAAATA
AGCTTATTCGAGGATTTACGGGTTCGATATATGATAGATGCATAATCGAT
TTATAATCGATGAATAATCGATGCATAATCGATTTATAATCGATGCATAA
TCGATTTATAATCGATGACGAATCGATTAACGATCGATGACGAATCGATT
AANCATTTGAGGGCTATGCATGTTAGCCTCCACTGATGCAAGTTACCCAA
TCTCACGGTATTATTTGATTGTGATTTTCGTTCAAACTTGTTGGATTGAC
ACCATCTGAAATAGACCACCCCATTGTGCGTGTTATTCTCCCAACAGAAA
CGACTATATATAGGCCCGTTTCATGTGACGTCACATGTTAGGACCCTCGA
ACACGCCCGGATGCCGCCCGGAATATTCCGGGCGTAATCCGGGTGTTCCG
GGCGCTAAGATCTATTTATCAAAAACGCCCGGATAGTTTATCCGGGCGGC
ATTTTTCGAAAACTTTATTTTTGATGTCTCAGCCCTCTAATTCACTTTAA
AAGTCATCTGGGACATCTCTTATGGACCTCCTTATTTTACCTTGATTCTT
AACCAGTCTCTATACTTAGTATAAATCCTTGCAATCATTAGCACGAGGTT
TTGGCGCCCCGCGATTCGTTGCAATTACACAGGGTGTTGAAAACGAAAAT
GACGTAAGATTTTACTGAAAACAACCGATATTCAAGTGTATTTACAAGAC
CATAAAGTATTTAAAGATTACCATCCAGATCAATTATTTACCTAAAATAC
ATTTATTTAATTACACAGAAATTACTAGCAGTCAGTCAAATCCTGCATTT
GAACGACGGGGTGTGCATTTGCAACGGATTTCCCGACCCCTAGAACGCGT
CAGGCAAATACGCCAATTTTAACTTTAAAGTAAAAAAACGGGGGAAATGA
AGATGAACGGGGCTTTCATTTTTTCTATACTATTCTTCATTCGTTAATAA
AGGATTGTGCCCATTGAAAAAAAATTCCACCCATTCAATCTTTTTTAATC
AAGCAAAATATTTTTGATAAAATTTGAGCATTTCTAAACGCCCGCGTCTT
ACTCGATAAATTTGCATACGGAACCCACCCTTACCGCTTTCTTTATGCGA
GCGGCCTATTGCGCTAGTGGTCCATATAGAATACTATTCAGTGATACTTG
ACAATTCTAAATACACCCCTGCATNTCATGCAAACGCCCTATTGCGTTAG
GTCCATATAGAATACTATTCAGTGATACTTGACAATTAAATACACCCCTG
CATCAAATTCATATCCATATTCTCTTCCCAAAGATTAGACTTACTTAGCA
GCTTCACTGCTAACCAAAACGACTGATCCGATTATTTCAATACTTTGAAA
GATCCAAGATTAAATAATGTTTTTACTTTCTTTTTATTCAGAAAAAATGG
ATCAAACAAAGCNAAGTAATGTTTTTACTTTCTTTTTATTCAGGAAAAAT
GGATCAAACAAAGCGGAGTCAATTTGTCAACATCACAATCAATACGGACT
GCTTTCACTAAACTCAAGAAGTGCGCAGCGTAAGTTACATTGTTTGTATG
GAACAGTTATCTCATATGTTGAAATCTAGATCGATTTTGTGCTTCCCATC
AATTAGTGTGCGTTACTTGTCACCGTAACTTTGGCAATTTATCTACCGTC
TCTTGAGCGTCGGTCAATTTGTCTAGTTTCAAGCTTAACAAAATCTACCG
TACCACTAGCCTCGATCCATGCGTATTATCATCGTTTTGNTTTAACAAAA
TCTACCGTACCACTAGCCTCGATCCCTGCGTATTATCATCGTTTTGATTC
TGACTGGGAGCGCTAGATAATACACCAGGGTATTCTCTGGCCTCAATCAG
CAAGAACGTAAATAAAGCCTGGGATACACAGGGACGAAGTTGCCGTACCC
ACGGATCTTTACACTCATATAATAGTAACTTTAATTGTCATTCTTTATTT
AGTGTGCCACCACCAATGTTACCGATTGTTACCATTATGAGCTGTTCAGG
GAGAGCGTGTTGCTTGAGAGTGACGAAGAAGAAAATAAGAGCCACTTTTT
TATTAAATTTAACAATGTATTAAAAATTAAAATGAGGCCATTGATCATTA
AAATCAAATTAAGAAAATATAGAGTGTAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00016433-exon-sc0000237-1575043694:117389..117513 | TCONS_00016433-exon-sc0000237-1575043694:117389..117513 | Clytia hemisphaerica | exon |
| TCONS_00016433-exon-sc0000237-1575043694:115185..115270 | TCONS_00016433-exon-sc0000237-1575043694:115185..115270 | Clytia hemisphaerica | exon |
| TCONS_00016433-exon-sc0000237-1575043694:114584..114761 | TCONS_00016433-exon-sc0000237-1575043694:114584..114761 | Clytia hemisphaerica | exon |
| TCONS_00016433-exon-sc0000237-1510915933:117389..117513 | TCONS_00016433-exon-sc0000237-1510915933:117389..117513 | Clytia hemisphaerica | exon |
| TCONS_00016433-exon-sc0000237-1510915933:115185..115270 | TCONS_00016433-exon-sc0000237-1510915933:115185..115270 | Clytia hemisphaerica | exon |
| TCONS_00016433-exon-sc0000237-1510915933:114584..114761 | TCONS_00016433-exon-sc0000237-1510915933:114584..114761 | Clytia hemisphaerica | exon |
| TCONS_00016433-exon-sc0000237-1491911889:117389..117513 | TCONS_00016433-exon-sc0000237-1491911889:117389..117513 | Clytia hemisphaerica | exon |
| TCONS_00016433-exon-sc0000237-1491911889:115185..115270 | TCONS_00016433-exon-sc0000237-1491911889:115185..115270 | Clytia hemisphaerica | exon |
| TCONS_00016433-exon-sc0000237-1491911889:114584..114761 | TCONS_00016433-exon-sc0000237-1491911889:114584..114761 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000237 | supercontig | sc0000237:114584..117513 - |
Blast
The following BLAST results are available for this feature:
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