TCONS_00016436 (transcript) - C. hemisphaerica

Overview
NameTCONS_00016436
Unique NameTCONS_00016436
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1411

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00016436 ID=TCONS_00016436|Name=TCONS_00016436|organism=Clytia hemisphaerica|type=transcript|length=1411bp
gcacaagaaaaaaaaaattaaaatggcgaCCGAAGAACGAAATATCGAAA
ACATTGACCTTGCTGAAGAATCAAAGGATATCAATGGTGTCCCTACAGAT
CCATTGACAGAAGAAAGGAGAGAAGAAATTATTGTTGAAGTAACTAAGTT
AGAAGATGAAATCAAGACGTTGAGACAAGCACTTTTACGTAAAGAAACAC
AACTCAATAACTTAAGAACAGAGCTAGGTGAAACAAGATGGGCAAGACTT
CAAAACTCTCAGGCcgTACAAAAATCAAAGCAAGCAATTTCAGATGCTGG
AAACAAAACATCACAGGCATTGAAAAATGTTGGAAATATAACTGCTAGCA
AATGGCAAGAAATTAAAGAATCACAACGCTACCAAAATGTATCTGAACGA
TTTTGGAGTACAACTGGGGCAGTTAAGGCTAAACTAACAGGAACTGGCCA
AACTCAATCGCAAGAGGAGACGAACAAGGAGCCAATTGTTGATACTCCAA
CAAACACAAGcATATAAAGTTCTTTCGGTCGATCTCTGGTATAATGTGAT
CATTGAGCAATGAAAGGTAtcaacaaaaaacgtaaaatgatattttaaat
tTCACATAAATGTTTTCATCGTATTTGttcaaataaaatatatatttttt
acgaGTTCATTTTGACGGCTCATGGCATGGCTGCTAGTTCTTTTTGTAGA
TTCAATCTATTATCTAGCATCTCTGAGTGACTTGCAAGGCTTCTTTCAAG
gtcttaaaagttttaaaaatttttgtaaagatACCTTAAAGCGGCCTTTA
TTTTAGTTTCCAATCATAAAGCACATTTTGATGCTTTCTGTCaatttatt
caatatttttcaggGGAAGTGTTTTGCGTTATCAACACTTGTcttttttt
cggatttttataaTAATGATACGTTTAGAtaaattttaagataaaatgat
atttttgtaaTATTTCTTCAATCAATAATCATTTTCAGAATTCctgatat
tttattttcatttttcctttgtttgTTGGGTatttaatttgtattttttg
tttatttgatttctCAGTTCCTAGTTCCCAAActctttgttttctttcat
tAGTGTTTACCGTTTTCAGTATGAGTCAAAGGTTttttaacaatagaatt
ttGCTGACTTTCGAAAGACCTTTTCCTTGCGACTGGGTTAAATTTATTGA
TGGAAATTTCTCTCTTTCCAGataaatttttggaaagttttcgtaaaaat
attttcttaattctttttcctgaacattcgaatgtttatcgtttagtttt
ttaatcaattatttCTTACGATAGTATGTAATATTTTTGGTATGGAgtat
ttcttatttttagtGTTTCAACGGTAATTTATTggataagaaaaaaaatg
ttaaacgaCAA
Run BLAST on NCBI

transcript from alignment at sc0000237:390918..396893-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00016436 ID=TCONS_00016436|Name=TCONS_00016436|organism=Clytia hemisphaerica|type=transcript|length=5976bp|location=Sequence derived from alignment at sc0000237:390918..396893- (Clytia hemisphaerica)
GCACAAGAAAAAAAAAATTAAAATGGCGACCGAAGAACGAAATATCGAAA
ACATTGACCTTGCTGAAGAATCAAAGGATATCAATGGTGTCCCTACAGAT
CCATTGACAGAAGAAAGGAGAGAAGAAATTATTGTTGAAGTAACTAAGGT
GAAAATTTCGAATATATTTATCAATCAATAATTCCTGTTTGCAGGAATTT
GCAACTTTTTTGAAAGTTGAAAGTGAACTTTAAAAATTTAATGCCGGGAA
ACAAAAGTAAGTTAAATTGGTGCAATAAAGTAGTGTCGATAAAACCATTT
AACCCAGGACATTTTATAATACTTTTCGCCACTGGCCAATAATACCAGAC
AGTTGGATGCGTCGCCAGGCTAGAAATGGTGCACAGTACACCGAATATAT
TCGNAGTAGTGTCGATAAAACCATTTAACCCAGGACATTTTATAATACTT
TTCGCCACTGGCCAATAATACCAGACAGTTGGATGCGTCGCCAGGCTAGA
AATGGTATGGTGGCACAGTACACACACCGAATATATTCGGAGTGAGGCAG
TAATTACTTTTGGCATATTGACATCATGACGCCAGGTTTAAGCCTCTCCC
TCAACCGCCATATAAGGACGTAGAGTGTAAATATAATTATTTGAGCAACT
TTTAGGGGCGAGAAAATCAAATATTCTTGTGCCAAACCCTGGACCAGTTT
AGGGGTTTTACAGCGCCCCACCCCCCCCCCCNGACCACCATATAAGGACG
TAGAGTGTAAATATAATTATTTGAGCAACTTTTTTTAGGGGCGAGAAAAT
CAAATATCCTAGGGCCAAGCCCTGGACCCGTTTAGGGGTTTTACAGCGCC
CCACCCCCCCCTTTCATTTTGATTATCAACCACTAACAGTCTTTTCCCGT
TACGAGTTACTTTGAATATGGATGCCGCCCCTAAAACTGGTAAAATTAGC
AAATTTTAGCTATTTTTGTAATTCTTTTAATTTTTTGGATGACTTTACTG
AAAAAGTCTGACAATTTTTATAATTTGAAAAAAATTTCTGTTGGAAAGTT
GTTTGTTGCAAACAAAAAATTCTTGAAATTTTTTTTCAATATAAAAAAGA
CTTTAATTCTAAGGGCAAAACATTAATTTTTGCACTAAGTGAATTAAATG
TGTCACAGAAATAATCATTTTTTAGCTTTTTTTGTAAAATAAGTCCAAAA
AGCAACCAAAAATAGGTGGTCTCCATGACAAATTGTCCCAAAAATTTTTA
CTACTAGGGTAGTAAAATACCTCTTCCAAGAGTCTGGGTGGGATGTAAAA
ATTCGTAAAAATCCTTTTACCGCTGTCTGAGATTTTACTACCGACCCCCC
CTGCCCCCAGCGGTTTGCGTAAATGCGTGAAAATTAAAAAAAAATTGCGT
GAATGCGTGAATTGGAAAGCTTTGCGTGAAAAAAAATTGCGTGAAATGTT
GAAAAACATTGTGTGAATGCGTGAATTTGGGAAAAAAAATTGCATGATTG
TGTGAAGTGAAGGTTGACTGGAGGGCCTCCCTGACCGACACACCTTGTCT
AATCTCCTCATACAGTAGCAACTATCTGGTCTACAAATTAGTTAAAGTGA
TTGTTTTTTCAAACAGCTTACTCAGCAGCTTTTTTCAATAAACATTTACC
GCCAATGGGCTCTAACTTGGGACTATCTGACAAAACATGGGACAGCAATT
CGGCCACCATTTCACCAAACCTCCAAAGTCATTTAATTAACATAACCATG
AATCATAGATAGCAAATGATGTGAATACGCTACTCTCATCAGGCTTTTAC
ACCACAAAAGGAACAAATCTTTGCAACGAGAAACGCATAAATGCGATTGC
GTGCATTCGCACAAGCGTCCAAACACAGATATAAAAAAGTCCGTTCCACA
GTGGAAAATTGTGAGATCTACTGTTATCAAGACTCTGTAACTTTGACATG
CCAATCAATTGCGCACACTGGAAAAAAGTCTATAGAGAAAAACAACAAAA
AACAAANTAACTTTGACATGCCAATCAATTGCGCACACTGGAAAAAAGTC
TATAGAGGAAAACAACAAAAAACAAAAACAAGAATTAGCGTCAAGATGTG
AACAATGTGTGTGTGATTAAATTGTTAAATTTACTTCTTCAAATTATATA
ATTTTAAAATGCTTTAAAGATACATTTGGTTGTGATTATGGGGTGGTGAA
AGTTTGATTGATAAACTTGATTGAAGTATCAGAACTAACTTGTTTTCAAA
GAGATTTTCAAAACTTATCTAAAAACAAGATCTAAATTCAAGAGAACAGA
TCGCATAATTGCAAGAGACAAGGTATGTTGGTATTACACCTACCTGGGCT
TTGAAGCATGATTTACATGAGAATAATAATATAAAGCTGAACAGGTTGGC
AGTGCCAATCTTAAAGCCAATCTAAAATGGTCAAAAACCAATCTTATTTT
GACCGGCATGATTTAAATTGTACTTCGCCTAACTACTGTACTTAGATGGA
CATAACTTCATTTGTCATCATTTCATATTTTAGTTAGAAGATGAAATCAA
GACGTTGAGACAAGCACTTTTACGTAAAGAAACACAACTCAATAACTTAA
GAACAGAGCTAGGTGAAACAAGATGGGCAAGACTTCAAAACTCTCAGGCG
TAAGAAATGAACAAGTTGATATTTTTCCCTCTAAGAAATGTGCTAAAATA
TTGCACAAATAAGATTTTTTCAACTTTCAACTTATCCATCTGCAGACATA
TGGGTTTAGTAAACCAACCATTAGAATCCAGCCCAGTGAGGCTTGAGTAG
AGATTTTTTATAGTCTCTGATTTAAAATTTCATTTTTCATTTTTCAGCGT
ACAAAAATCAAAGCAAGCAATTTCAGATGCTGGAAACAAAACATCACAGG
CATTGAAAAATGTTGGAAATATAACTGCTAGCAAATGGCAAGAAATTAAG
TAAGATTAATTTAACTCAGTACTTGATATACCCAACCCATTTGAAATTGT
ATTGTTGAACCTCAAAAGGCATATTTTGATTGTAACTAGGTCAAGAGCCT
AACTCACTTCTGTTACCTTTGATAGCTGATGTTTTGAATGACGATTCAAT
GATAATCTTAGATCTGTTTAGTGAGGTTTTTACTTTTCTGATGTTAATGG
TTTTTTTTATTTAATTCAGAGAATCACAACGCTACCAAAATGTATCTGAA
CGATTTTGGAGTACAACTGGGGCAGTTAAGGTATGAATTCTATTACTATG
CAATCAAATAATCATTGAAAATTCTTTCTTGTGGTAGGTTTTTCATGAGA
ATTGAATATTTTAGAAACTAACAAAGTCATCTTAAAACAACATTCCATGC
TTAAAAGGCTATATTAAAAGACAAAAAACCTCTTAAACTTTATTATGCCT
TTATTTATTTTTGTTTAGATGAAATTTTTCGGAATGCCTTTAAGACAATC
GATAACGGGAGTGCCAGCTGGAAGTAGCAGTTTATAACCAATGAGTCAAT
TGACATTAAAATATAAATTTTTGTTTAAAAAGTTATCTGTTGAATTTTAA
GAAAATTTCATCTTAAAATTTCATTAAACACTTTTCATTTCATTAAAGCA
CTTTAAAAACACTTTCCTTAGAGCATTCTTTGTGTTTTGTTTTATTTTTT
TTTTCTTAGGCGAGAATTTGATTTGTTGTTATTCAGGCAAATCGCTTGTC
AAGTACCATTAATGTTTTTGAAAGTTATTAAGTTAACCTACATTTTAAAC
TAAAAATATAATTGAACTTTGTAGTTTTATGCTTGTCGAAGCTGTATAAT
GAATGTTCAGTTTTATTTCAAATATTTATTTGGTAGGAGTAACTGTTAAA
GTGGAAATTGGATATTATTAAGGGTTAGGTTGTTTGGTCTGTAGAACAAT
AAATTAAATAAGTCTCGCTTTTAGTGTATATTTTGAATTTGTTGATATAT
AATGTATAAAATTTAACTGCTAAATATTTTTCCAAAATAACCTGCACCTT
TTTGAATAAGTTTATTGCACAAACAAAAAACTCTTAAATTAATATGAGGA
AGCAAACGTTCAGGTTTCTTTATTACATAGCATTTTTCAGTGGTTTTCTG
TTTTCAAAACATTTTTTTTTTAACTGGAAATTTTCAAAATGCACCTGTGT
GTGAAATTTTAATTGTATTATCAATCAAACTTATTAATTATATTAGGAGA
AATTGCTATGGGAAATGATTAATAATTGCTAATGTAATAGAAATAATTTC
AGATTGACTCATGCTAATAAAGCTAATTTAAAAATTATAACACCTGACTC
CCCTAGTGAATCATTGAAATTAAATGTCATTAATAAAGTATCCCGCCCAT
CTTTTTTTTAACCTAATTTTTAATTTTGCAACAAATTCACTCCTAAACCC
AGATTAGTCAGTGGTGCCATTTTTCCACCTCTCTACAGAAATTTGTCAAA
CATCATTTCTATCTCCTCCATAAAAGTGATTTTAGTCAATTGACCCACTA
AAGCAAAGATTTTTAAAGTTTCTGCTCGGAGTTCAGAAAACCGATGCTTC
GTGAAAGTTGGTCACTTTGAACTACCAGTCACATAGCCGACTAGATTTAC
GGGACAAGATGGAGTTTTTACAAGCTCTTATTTTGATTTGGTTGGTCGTT
AACCAGGTCGTTTACTTTTTCTGAAGTATGTTATAAGAACTCCATCTCAT
CGGAGATTTACACTAAAATGTGAAAGTTCTGATAGAATAATCTAAAAGAA
TATTAGCCTTTTTTTTCTATGTGTGTGATTACAGGCTAAACTAACAGGAA
CTGGCCAAACTCAATCGCAAGAGGAGACGAACAAGGAGCCAATTGTTGAT
ACTCCAACAAACACAAGGTAATGTACCTTAAGGGAACTATAGAAATTAGA
AATCATAGATTGGGTGTTAACCTTTACATTGTTGCAAAATCTTTATAAGT
TTTAAAACAACTTTCTTTCACTTTTTAATAAGGGTGTCTTTGTAGACTTT
GGTAGATATCAATACTATACTTAAGTTTTCAAAAAGGTTTTCAACATTAT
TTAATTCCTCAATCTTTTTTTTCAGCATATAAAGTTCTTTCGGTCGATCT
CTGGTATAATGTGATCATTGAGCAATGAAAGGTATCAACAAAAAACGTAA
AATGATATTTTAAATTTCACATAAATGTTTTCATCGTATTTGTTCAAATA
AAATATATATTTTTTACGAGTTCATTTTGACGGCTCATGGCATGGCTGCT
AGTTCTTTTTGTAGATTCAATCTATTATCTAGCATCTCTGAGTGACTTGC
AAGGCTTCTTTCAAGGTCTTAAAAGTTTTAAAAATTTTTGTAAAGATACC
TTAAAGCGGCCTTTATTTTAGTTTCCAATCATAAAGCACATTTTGATGCT
TTCTGTCAATTTATTCAATATTTTTCAGGGGAAGTGTTTTGCGTTATCAA
CACTTGTCTTTTTTTCGGATTTTTATAATAATGATACGTTTAGATAAATT
TTAAGATAAAATGATATTTTTGTAATATTTCTTCAATCAATAATCATTTT
CAGAATTCCTGATATTTTATTTTCATTTTTCCTTTGTTTGTTGGGTATTT
AATTTGTATTTTTTGTTTATTTGATTTCTCAGTTCCTAGTTCCCAAACTC
TTTGTTTTCTTTCATTAGTGTTTACCGTTTTCAGTATGAGTCAAAGGTTT
TTTAACAATAGAATTTTGCTGACTTTCGAAAGACCTTTTCCTTGCGACTG
GGTTAAATTTATTGATGGAAATTTCTCTCTTTCCAGATAAATTTTTGGAA
AGTTTTCGTAAAAATATTTTCTTAATTCTTTTTCCTGAACATTCGAATGT
TTATCGTTTAGTTTTTTAATCAATTATTTCTTACGATAGTATGTAATATT
TTTGGTATGGAGTATTTCTTATTTTTAGTGTTTCAACGGTAATTTATTGG
ATAAGAAAAAAAATGTTAAACGACAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009178XLOC_009178Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016436-exon-sc0000237-1575043694:396746..396893TCONS_00016436-exon-sc0000237-1575043694:396746..396893Clytia hemisphaericaexon
TCONS_00016436-exon-sc0000237-1575043694:394245..394360TCONS_00016436-exon-sc0000237-1575043694:394245..394360Clytia hemisphaericaexon
TCONS_00016436-exon-sc0000237-1575043694:393945..394046TCONS_00016436-exon-sc0000237-1575043694:393945..394046Clytia hemisphaericaexon
TCONS_00016436-exon-sc0000237-1575043694:393664..393724TCONS_00016436-exon-sc0000237-1575043694:393664..393724Clytia hemisphaericaexon
TCONS_00016436-exon-sc0000237-1575043694:392027..392109TCONS_00016436-exon-sc0000237-1575043694:392027..392109Clytia hemisphaericaexon
TCONS_00016436-exon-sc0000237-1575043694:390918..391818TCONS_00016436-exon-sc0000237-1575043694:390918..391818Clytia hemisphaericaexon
TCONS_00016436-exon-sc0000237-1510915933:396746..396893TCONS_00016436-exon-sc0000237-1510915933:396746..396893Clytia hemisphaericaexon
TCONS_00016436-exon-sc0000237-1510915933:394245..394360TCONS_00016436-exon-sc0000237-1510915933:394245..394360Clytia hemisphaericaexon
TCONS_00016436-exon-sc0000237-1510915933:393945..394046TCONS_00016436-exon-sc0000237-1510915933:393945..394046Clytia hemisphaericaexon
TCONS_00016436-exon-sc0000237-1510915933:393664..393724TCONS_00016436-exon-sc0000237-1510915933:393664..393724Clytia hemisphaericaexon
TCONS_00016436-exon-sc0000237-1510915933:392027..392109TCONS_00016436-exon-sc0000237-1510915933:392027..392109Clytia hemisphaericaexon
TCONS_00016436-exon-sc0000237-1510915933:390918..391818TCONS_00016436-exon-sc0000237-1510915933:390918..391818Clytia hemisphaericaexon
TCONS_00016436-exon-sc0000237-1491911889:396746..396893TCONS_00016436-exon-sc0000237-1491911889:396746..396893Clytia hemisphaericaexon
TCONS_00016436-exon-sc0000237-1491911889:394245..394360TCONS_00016436-exon-sc0000237-1491911889:394245..394360Clytia hemisphaericaexon
TCONS_00016436-exon-sc0000237-1491911889:393945..394046TCONS_00016436-exon-sc0000237-1491911889:393945..394046Clytia hemisphaericaexon
TCONS_00016436-exon-sc0000237-1491911889:393664..393724TCONS_00016436-exon-sc0000237-1491911889:393664..393724Clytia hemisphaericaexon
TCONS_00016436-exon-sc0000237-1491911889:392027..392109TCONS_00016436-exon-sc0000237-1491911889:392027..392109Clytia hemisphaericaexon
TCONS_00016436-exon-sc0000237-1491911889:390918..391818TCONS_00016436-exon-sc0000237-1491911889:390918..391818Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000237supercontigsc0000237:390918..396893 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
66.2016	61.2576	86.3199	81.767	32.311	5.73379	112.866	90.4609	115.181	114.121	66.3733	68.7853	31.2606	21.6461	55.1158	56.3535	38.0779	42.9839	36.4782	50.5065	42.7424	44.1446	47.6506	50.5871	25.4968	24.5276	75.0491	58.7	85.8843	56.9152
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00016436 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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