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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00016441 ID=TCONS_00016441|Name=TCONS_00016441|organism=Clytia hemisphaerica|type=transcript|length=3258bp
AATCAACTTCAATTTATCATTGACGCGTTCAAGGGACAGGTAGTTTACGC
GCTATCGACACATCCATATGGCTGTCGTGTGATTCAAAGGATCTTGGAGC
ACTGTACCATTGATCAAACGTCTCCCATCCTTGCTGAACTCCATGAACAC
ACAGAGCGCTTAATACAGGACCAATATGGAAATTATGTGATTCAACATGT
TTTAGAACATGGTAGCCCTGACGACAAGTCGGCCATTGTTAATATGGTCA
GAGGAAATGTTTTACTCTTGAGTCAGCACAAATTTGCAAGtaATGTGATT
GAGAAATGTGTAACCCATGCTTCCCGTGCTGAACGTTCAAGACTTATCGA
AGAAGTTTGCAATTATGTTGACGGCCCCCATGGTGCCCTCTACAGTATGA
TGAAGGATCAGTATGCAAATTATGTTGTTCAGAAAATGATTGATGTTGCT
GAGCCCCTTCAAAGAAAGGTTTTGATGATGAAAATTAGACCACATGTTGC
AACACTGCGCAAATATACTTACGGAAAACATATCCTAGCCAAGTTGGAGA
CTTTCGAGAAAGCGTACATGCAGCCAACAGATTTGTTGTTTTTGCCCGCT
ACAACCCAGATTGCACCATTTTAGTTGGATACTGTTTGAAAGAAGTAGTA
TTCTGTATGGTGgttttttttctcaatgttgttgattttttggaaatctt
tatTTTGGATGATTGGGTTATCtttttggtagattttttttctgtcttta
ttttttgtcattttttaaaatgattttagtACCAATAGTTATATAATGAA
CAGATAGAAATTCTTCAATTACGGTTGATTTTTAAAGACCTATTGCTGAA
TTTCTTACCATATTTTTCATTTAGCTTTATATTGTTTATATTATTACATA
CTCTATATACATAATGTCTaacaaattttgatttgtttattaCTTTATAT
TTTGCTTTATATTGACTTAACGGTGATGGCTTTTAACATTTTATCAGact
taaaatgtcattttaacCCTTGTGATATTATGTCTCAGGGTATTAGATTT
AACGGTCAGTATacttaatttttgttttaagtttgtttttgattttcact
ttttagtagtgaatttttgtttatttttgattatataTTTGATTTGATGC
AGATAggattttgaaatctttgataCGACCCCTTTAACAGTAATATTGTG
TagttaaaaattatatatagcAGTAATGATTTTCTTATAGAATTTTATTT
GTTTCTATTTTGGgttgattttttgtttatgaTCTCTTTATAACTAACCC
CTCTTGGAAGAGTGGTATTTGGAATTCTCCCAGCAAACAAAATTGGTTAT
TGTTGTATATTCGATGACCACAAATACAGAACCACAGGTACGTATCGTTT
ACTTCACCCCatatataaatttttgattATGTATATTGACTTAAGTCCAC
TTATTATGCCCCTATTAGGTTAAGCATTCTCTTTGCATTTCTCTGCTATT
GATGTATAGTGATAGTTTGTCAGGTTGAATGGATAAATTCAAGATGATAT
GTGCACTGCCCTGCATAACATAAACTCCCTTTTACAACTAAACTGATTGG
TTGCATGTGACTTATTCTGTGAAGAAAGGCCATAACATTTAATGATCTTG
TGAAGTCACTGCAGTGGTGCATGTCCTGAATTTTGAATTTACTGTTCTGC
CTGAACAAACTTGATTGATTGTCATGTACAGGGGACCCTTTGCACTTCTA
CTACGATCTTGTAAGTTGTAATTGTGTTTATATGAACATATGTAAATATG
AAGGAAAAAGCATATGTACAttgtcaaaagaaaaaacagcATTTTTTTAC
GGAAATTTTATTGTGTTTTTGTTTAGGTGGAAAAACTACTTTTTTGAGCA
TGGTATATATGTAATTAAAAACAGGCAATAAAAGTAATATTTTATTTCAC
TATCAACCCCCTCCTGACCCTGAAATTTTGGATTAGCGAGTTTAATGTGT
TTTTTCGAATCTTTAAAACAAGAGAAAGTTTTAATGGCTTGTTTTAGTTT
TGTAAATGGTACTTTTTTAAAGGTTCGTCCAATTGCCCCCTTTTCCCTAA
ATGATATATATTTAGTGTTTCGAATATTTTAATCTGTTTTTGGTGTTTAT
AAGTCCCTTATATGAGAAAATCCAacaattttttggtgttttatgCTATT
GTACATTTTTAAGTGTACATTATTGGCTTTACCATGTttgatttgaatat
ttgctATATTGTAACAGTTTGTTCTTCCAATGAATGGCTTTAAGCTGTTA
TACAAATCCATTAAGTTATCAAGTTGCATGTTACAAACTCTTTTAACCTG
TAAAATGATTTTTGTATAGACTATGTATAGATCGCTTGCACGTATTTTTA
ATGAATCATACTAATTAGTGCACCTTTAATTAAAGTGAAAACGCACTGTA
TAAACAATGTATGTATAAGACCCAcaagttttttgttgttgaaaattGAT
GCTGTTGGTGTATAGAGGAAAAGAAGGACCTAATAAAGTCACTCGTGCAT
TTATTGATAGTGTATACTTTATCATAATATTTTTAGAattgaacaaaaaa
acaatGTTTATTAGTACCCTCTTGTatgtaaaacttgaaaaaaccaCAAT
ATTGTAAAGATTGTATCAAAAAAACAAACCTAACGTAATGATAATTTAGG
ATTAAACACAAGGAAACTAAGCTTCCAAGCGATGATTACCATGAACGGGC
GAGCAACTCtctttttttataggaactGGTTATTGCTGAGCCTCATTCTC
TTCAGAAAAGCTTACATAAAGATTTGTCTCGCTTTTTCTAAGTATGAAAA
GCTTTCGAACTTAGTTTCCCTCATGTATACATATATAATTTAATaccatt
ttgtgattttttttgacatGACATTATCTAAAATACAGTCCAAAAGCTCA
gcaaatttttgaatgaaaatcattttgaaacTTCTCCATCAATGAAATGC
CTATATTATTATCAGGAGTCATGATTAGTTTTTTTATTAAGAACCTAGAA
CAGTTTTTTGGTGTAGTTATATGTGTAAGCTTATATAcaggaaaaattgt
aaaaaaaaatccgaaataatcaactcttttttttttttggaaaaagggCT
TTACAAAACAAATGATGACTTTTCAGTTATTTccattttctattgtttaa
accAATACAGTCTGATTCAAGAAGTGATACCTtgttggaaaaataattta
gaGTGGTT Run BLAST on NCBI transcript from alignment at sc0000237:405431..409830- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00016441 ID=TCONS_00016441|Name=TCONS_00016441|organism=Clytia hemisphaerica|type=transcript|length=4400bp|location=Sequence derived from alignment at sc0000237:405431..409830- (Clytia hemisphaerica)
AATCAACTTCAATTTATCATTGACGCGTTCAAGGGACAGGTAGTCAGTAC
AATTCGTCAATCTTACACTTATCTTACTTTGTTATTTTGTTTCTCATGAC
ATGCATACCTCAATATTTAAATTGGAAAAATCTATTTGAGAGATGCTCAA
AGGAGGAAGTTCAAGTTTGTTAAAATTCCTCTTACACTTATTTTACTTTA
TTTTCTCATTTCTCTTCCAGAAAGAATATGAATATTGGGGGTGGGATATA
ACATTTTTTGGAATTTAACCCCCTGAACATTGTGACTGCATCAGTTGACC
CCCCCCCTTTCTGGCAAATGAAGTTCAAGTTTGTAAAAACTCCTTGTCTT
GTATTGCTCAAATATTGTTAGACTTTTCATAATGAATTCATAATGAAATG
CAAAGATCATTTCCAGGATTATTTTTGACCAAATTAATTCTTTCTTTACA
GGTTTACGCGCTATCGACACATCCATATGGCTGTCGTGTGATTCAAAGGA
TCTTGGAGCACTGTACCATTGATCAAACGTCTCCCATCCTTGCTGAACTC
CATGAACACACAGAGCGCTTAATACAGGACCAATATGGAAATTATGTGAT
TCAACATGTTTTAGAACATGGTAGCCCTGACGACAAGTCGGCCATTGTTA
ATATGGTCAGAGGAAATGTTTTACTCTTGAGTCAGCACAAATTTGCAAGG
TAGGTAGTGCTTCTCCTAATTCATGAATATTGATAAGGTAGCCAATCAGA
TTCGCGCGTTTCCAATCAAAACAGTAATATTACGTGATTTCAACCATTGT
TTAACAGCCAATAGAATTCGGCGCCAGGACCTTCATTAATAATCGGCCTA
GTACTGTCTTTCCTCTGTTCTTACGTTAAGTCCGGTACACACGTCGAATT
TTTTAGACCGTGTAGGCCGAACCTCTCAGCTAGCTCAGAATCAGTCAGTG
AAGTAATCTACAGACAAAGCTTTTACTTGGCACGAATAAACCATTGTTTT
GAAGTACATACTAAATCTCACTTTTCTTTTCTTTTCTTTTTATAGTAATG
TGATTGAGAAATGTGTAACCCATGCTTCCCGTGCTGAACGTTCAAGACTT
ATCGAAGAAGTTTGCAATTATGTTGACGGGTAAGTTGCTCAACCTTTTAA
TTCAAAATTTTCGATAAGATTTCCTTTTGTAAAATGCTTTCATGTGTCTG
TCAGTTGTTGACAATTCATTTCACCAAGAACTATCTAAAGTATCAAACTT
CCTTTGCTGTATTTGATTCTTTTTTTCTTCATCTCCAGTTGCATCTAAAA
TCTATATAAGAAAAAACATAACCCAAAGATCAGCATCCTTCTTAGTTTTT
AAATAAGAAACAACAAGAAAGTGTTCCACCAAAATTTACGAACTTTCTTG
TTGTTTTTTATTTAAAAAACTAAGAAGGATGCTGACCTTCGGGTTATGTT
TTTTCTTATATTTTTTGAAATTTTCTGGTACTGTTGGATTCTAAAATCTA
TATTCCACCCTTTTAGCCCCCATGGTGCCCTCTACAGTATGATGAAGGAT
CAGTATGCAAATTATGTTGTTCAGAAAATGATTGATGTTGCTGAGCCCCT
TCAAAGAAAGGTTTTGATGATGAAAATTAGACCACATGTTGCAACACTGC
GCAAATATACTTACGGAAAACATATCCTAGCCAAGTTGGAGACTTTCGAG
AAAGCGTACATGCAGCCAACAGATTTGTTGTTTTTGCCCGCTACAACCCA
GATTGCACCATTTTAGTTGGATACTGTTTGAAAGAAGTAGTATTCTGTAT
GGTGGTTTTTTTTCTCAATGTTGTTGATTTTTTGGAAATCTTTATTTTGG
ATGATTGGGTTATCTTTTTGGTAGATTTTTTTTCTGTCTTTATTTTTTGT
CATTTTTTAAAATGATTTTAGTACCAATAGTTATATAATGAACAGATAGA
AATTCTTCAATTACGGTTGATTTTTAAAGACCTATTGCTGAATTTCTTAC
CATATTTTTCATTTAGCTTTATATTGTTTATATTATTACATACTCTATAT
ACATAATGTCTAACAAATTTTGATTTGTTTATTACTTTATATTTTGCTTT
ATATTGACTTAACGGTGATGGCTTTTAACATTTTATCAGACTTAAAATGT
CATTTTAACCCTTGTGATATTATGTCTCAGGGTATTAGATTTAACGGTCA
GTATACTTAATTTTTGTTTTAAGTTTGTTTTTGATTTTCACTTTTTAGTA
GTGAATTTTTGTTTATTTTTGATTATATATTTGATTTGATGCAGATAGGA
TTTTGAAATCTTTGATACGACCCCTTTAACAGTAATATTGTGTAGTTAAA
AATTATATATAGCAGTAATGATTTTCTTATAGAATTTTATTTGTTTCTAT
TTTGGGTTGATTTTTTGTTTATGATCTCTTTATAACTAACCCCTCTTGGA
AGAGTGGTATTTGGAATTCTCCCAGCAAACAAAATTGGTTATTGTTGTAT
ATTCGATGACCACAAATACAGAACCACAGGTACGTATCGTTTACTTCACC
CCATATATAAATTTTTGATTATGTATATTGACTTAAGTCCACTTATTATG
CCCCTATTAGGTTAAGCATTCTCTTTGCATTTCTCTGCTATTGATGTATA
GTGATAGTTTGTCAGGTTGAATGGATAAATTCAAGATGATATGTGCACTG
CCCTGCATAACATAAACTCCCTTTTACAACTAAACTGATTGGTTGCATGT
GACTTATTCTGTGAAGAAAGGCCATAACATTTAATGATCTTGTGAAGTCA
CTGCAGTGGTGCATGTCCTGAATTTTGAATTTACTGTTCTGCCTGAACAA
ACTTGATTGATTGTCATGTACAGGGGACCCTTTGCACTTCTACTACGATC
TTGTAAGTTGTAATTGTGTTTATATGAACATATGTAAATATGAAGGAAAA
AGCATATGTACATTGTCAAAAGAAAAAACAGCATTTTTTTACGGAAATTT
TATTGTGTTTTTGTTTAGGTGGAAAAACTACTTTTTTGAGCATGGTATAT
ATGTAATTAAAAACAGGCAATAAAAGTAATATTTTATTTCACTATCAACC
CCCTCCTGACCCTGAAATTTTGGATTAGCGAGTTTAATGTGTTTTTTCGA
ATCTTTAAAACAAGAGAAAGTTTTAATGGCTTGTTTTAGTTTTGTAAATG
GTACTTTTTTAAAGGTTCGTCCAATTGCCCCCTTTTCCCTAAATGATATA
TATTTAGTGTTTCGAATATTTTAATCTGTTTTTGGTGTTTATAAGTCCCT
TATATGAGAAAATCCAACAATTTTTTGGTGTTTTATGCTATTGTACATTT
TTAAGTGTACATTATTGGCTTTACCATGTTTGATTTGAATATTTGCTATA
TTGTAACAGTTTGTTCTTCCAATGAATGGCTTTAAGCTGTTATACAAATC
CATTAAGTTATCAAGTTGCATGTTACAAACTCTTTTAACCTGTAAAATGA
TTTTTGTATAGACTATGTATAGATCGCTTGCACGTATTTTTAATGAATCA
TACTAATTAGTGCACCTTTAATTAAAGTGAAAACGCACTGTATAAACAAT
GTATGTATAAGACCCACAAGTTTTTTGTTGTTGAAAATTGATGCTGTTGG
TGTATAGAGGAAAAGAAGGACCTAATAAAGTCACTCGTGCATTTATTGAT
AGTGTATACTTTATCATAATATTTTTAGAATTGAACAAAAAAACAATGTT
TATTAGTACCCTCTTGTATGTAAAACTTGAAAAAACCACAATATTGTAAA
GATTGTATCAAAAAAACAAACCTAACGTAATGATAATTTAGGATTAAACA
CAAGGAAACTAAGCTTCCAAGCGATGATTACCATGAACGGGCGAGCAACT
CTCTTTTTTTATAGGAACTGGTTATTGCTGAGCCTCATTCTCTTCAGAAA
AGCTTACATAAAGATTTGTCTCGCTTTTTCTAAGTATGAAAAGCTTTCGA
ACTTAGTTTCCCTCATGTATACATATATAATTTAATACCATTTTGTGATT
TTTTTTGACATGACATTATCTAAAATACAGTCCAAAAGCTCAGCAAATTT
TTGAATGAAAATCATTTTGAAACTTCTCCATCAATGAAATGCCTATATTA
TTATCAGGAGTCATGATTAGTTTTTTTATTAAGAACCTAGAACAGTTTTT
TGGTGTAGTTATATGTGTAAGCTTATATACAGGAAAAATTGTAAAAAAAA
ATCCGAAATAATCAACTCTTTTTTTTTTTTGGAAAAAGGGCTTTACAAAA
CAAATGATGACTTTTCAGTTATTTCCATTTTCTATTGTTTAAACCAATAC
AGTCTGATTCAAGAAGTGATACCTTGTTGGAAAAATAATTTAGAGTGGTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
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| TCONS_00016441-exon-sc0000237-1575043694:409789..409830 | TCONS_00016441-exon-sc0000237-1575043694:409789..409830 | Clytia hemisphaerica | exon |
| TCONS_00016441-exon-sc0000237-1575043694:409132..409379 | TCONS_00016441-exon-sc0000237-1575043694:409132..409379 | Clytia hemisphaerica | exon |
| TCONS_00016441-exon-sc0000237-1575043694:408702..408785 | TCONS_00016441-exon-sc0000237-1575043694:408702..408785 | Clytia hemisphaerica | exon |
| TCONS_00016441-exon-sc0000237-1575043694:405431..408314 | TCONS_00016441-exon-sc0000237-1575043694:405431..408314 | Clytia hemisphaerica | exon |
| TCONS_00016441-exon-sc0000237-1510915933:409789..409830 | TCONS_00016441-exon-sc0000237-1510915933:409789..409830 | Clytia hemisphaerica | exon |
| TCONS_00016441-exon-sc0000237-1510915933:409132..409379 | TCONS_00016441-exon-sc0000237-1510915933:409132..409379 | Clytia hemisphaerica | exon |
| TCONS_00016441-exon-sc0000237-1510915933:408702..408785 | TCONS_00016441-exon-sc0000237-1510915933:408702..408785 | Clytia hemisphaerica | exon |
| TCONS_00016441-exon-sc0000237-1510915933:405431..408314 | TCONS_00016441-exon-sc0000237-1510915933:405431..408314 | Clytia hemisphaerica | exon |
| TCONS_00016441-exon-sc0000237-1491911889:409789..409830 | TCONS_00016441-exon-sc0000237-1491911889:409789..409830 | Clytia hemisphaerica | exon |
| TCONS_00016441-exon-sc0000237-1491911889:409132..409379 | TCONS_00016441-exon-sc0000237-1491911889:409132..409379 | Clytia hemisphaerica | exon |
| TCONS_00016441-exon-sc0000237-1491911889:408702..408785 | TCONS_00016441-exon-sc0000237-1491911889:408702..408785 | Clytia hemisphaerica | exon |
| TCONS_00016441-exon-sc0000237-1491911889:405431..408314 | TCONS_00016441-exon-sc0000237-1491911889:405431..408314 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000237 | supercontig | sc0000237:405431..409830 - |
Blast
BLAST of TCONS_00016441 vs. Swiss-Prot (Human)
Match: PUM1 (Pumilio homolog 1 OS=Homo sapiens GN=PUM1 PE=1 SV=3) HSP 1 Score: 319.701 bits (818), Expect = 3.117e-91 Identity = 150/183 (81.97%), Postives = 165/183 (90.16%), Query Frame = 1
Query: 7 LQFIIDAFKGQVVYALSTHPYGCRVIQRILEHCTIDQTSPILAELHEHTERLIQDQYGNYVIQHVLEHGSPDDKSAIVNMVRGNVLLLSQHKFASNVIEKCVTHASRAERSRLIEEVCNYVDGPHGALYSMMKDQYANYVVQKMIDVAEPLQRKVLMMKIRPHVATLRKYTYGKHILAKLETF 555
LQFIIDAFKGQV +ALSTHPYGCRVIQRILEHC DQT PIL ELH+HTE+L+QDQYGNYVIQHVLEHG P+DKS IV +RGNVL+LSQHKFASNV+EKCVTHASR ER+ LI+EVC DGPH ALY+MMKDQYANYVVQKMIDVAEP QRK++M KIRPH+ATLRKYTYGKHILAKLE +
Sbjct: 986 LQFIIDAFKGQV-FALSTHPYGCRVIQRILEHCLPDQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEKCVTHASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPGQRKIVMHKIRPHIATLRKYTYGKHILAKLEKY 1167 HSP 2 Score: 90.1225 bits (222), Expect = 4.564e-18 Identity = 49/170 (28.82%), Postives = 92/170 (54.12%), Query Frame = 1
Query: 43 VYALSTHPYGCRVIQRILEHCTIDQTSPILAELHEHTERLIQDQYGNYVIQHVLEHGSPDDKSAIVNMVRGNVLLLSQHKFASNVIEKCVTHASRAERSRLIEEVCNYVDGPHGALYSMMKDQYANYVVQKMIDVAEPLQRKVLMMKIRPHVATLRKYTYGKHILAKLET 552
V +L+ YGCRVIQ+ LE DQ + ++ EL H + ++DQ GN+V+Q +E P I++ +G V LS H + VI++ + H + ++EE+ + + +++DQY NYV+Q +++ P + ++ +IR +V L ++ + +++ K T
Sbjct: 925 VLSLALQMYGCRVIQKALEFIPSDQQNEMVRELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQTLPILEELHQHTE-------QLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEKCVT 1087
The following BLAST results are available for this feature:
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