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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00016451 ID=TCONS_00016451|Name=TCONS_00016451|organism=Clytia hemisphaerica|type=transcript|length=1160bp
GAgaatttgttttttctcctTTGATAATTTGTGTATTAGAGGTTTAATAT
AGTTAGTattgaaaaggtctatcgacATACATGGATGGCGATATATTGTT
CCCACAACAAGGTTGCTTTGTGCAGGTCTAGGGATCTCTACGAAGATGGA
CTCAAGATTTTTAGCTAGATAGCAGATGCTATCTAGATCTTTCCTTGGAA
CTGGAATAAGAGATCTAGAAATGTAAAGGGACACTCCTCCAGCTGTTGAC
TCAGTAGGGGTGaagaattttttgtaattttctaagGGGAAATCGTGTTC
CCCCTCTTTAGGGTGAGCAAGATTTTCATCATCAGTTGTATTTCTTGATT
CAGAAATACCTATAAAGTCAAAATTAATGTTGAGCTGAGATAAAAGGGTT
TGAAGTTTGTCAAAGTGTTTGGAGATGGAAGATATATTGAGGTGAAATGC
TGAGAGACCCTCAGATTTGTGAGATAGAAGCGAATTAAATTCTTCACATG
TAGTATAAGAGCAAGTGTTAGATTGGAATTGtatgtcatcaaaattttca
tcattgTCACTGGTTGTTATACCAGTAACTATGTCATTAAGGTTAGAGAG
GATAGATTTAAGGTTTTCATTGAGACTAGGGCCGCCAGCATCAGGCTGCT
GTATGCTTTCTTCTGGGGGGAGGGGAAGGGCATTATTGATACAACGTGGA
CAATACCAGTTGTCATTATTATTATTCTCGCTAAAGGATTGGAACTCTTC
ACGACTGAGGCCCGAGCATTTTTTTTGGTGAACCCATAGGTCACAAATAT
CACATTGAATGCAGTTGCAGTTGTTGCTAACAGACTTGAGGCATATTGAA
CAGTTGTACATACAGAAGGCTTTTAAAACAAGTTCAGTTAAAGATAAAca
agatgaaaaataaagtttaaaTCTTACGGCAACAAAGAAGCAGTGAGAAC
CATattgaaaaaagttattttagttCAGATTTTTCTTTGGTATCGGTGTC
TTGAGCGAAATCAGTTGCATGTTCATGATTGAGGATAAGGTGTCTGAAGT
CATCCTCAGACTCGAATGCATGTACATTTCTGCCTCTGAGGTTTCTGTTG
GAGAAGCAGACCTTGAGGTTACCCTCAATGTCACTAAAGACAAATTTAAT
CGAGCTGATA Run BLAST on NCBI protein sequence of TCONS_00016451-protein >TCONS_00016451-protein ID=TCONS_00016451-protein|Name=TCONS_00016451-protein|organism=Clytia hemisphaerica|type=polypeptide|length=287bp
MYNCSICLKSVSNNCNCIQCDICDLWVHQKKCSGLSREEFQSFSENNNND
NWYCPRCINNALPLPPEESIQQPDAGGPSLNENLKSILSNLNDIVTGITT
SDNDENFDDIQFQSNTCSYTTCEEFNSLLSHKSEGLSAFHLNISSISKHF
DKLQTLLSQLNINFDFIGISESRNTTDDENLAHPKEGEHDFPLENYKKFF
TPTESTAGGVSLYISRSLIPVPRKDLDSICYLAKNLESIFVEIPRPAQSN
LVVGTIYRHPCMSIDLFNTNYIKPLIHKLSKEKKQIL Run BLAST on NCBI transcript from alignment at sc0000237:301711..302870 Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00016451 ID=TCONS_00016451|Name=TCONS_00016451|organism=Clytia hemisphaerica|type=transcript|length=1160bp|location=Sequence derived from alignment at sc0000237:301711..302870 (Clytia hemisphaerica)
TATCAGCTCGATTAAATTTGTCTTTAGTGACATTGAGGGTAACCTCAAGG
TCTGCTTCTCCAACAGAAACCTCAGAGGCAGAAATGTACATGCATTCGAG
TCTGAGGATGACTTCAGACACCTTATCCTCAATCATGAACATGCAACTGA
TTTCGCTCAAGACACCGATACCAAAGAAAAATCTGaactaaaataacttt
tttcaatATGGTTCTCACTGCTTCTTTGTTGCCGTAAGAtttaaacttta
tttttcatcttgTTTATCTTTAACTGAACTTGTTTTAAAAGCCTTCTGTA
TGTACAACTGTTCAATATGCCTCAAGTCTGTTAGCAACAACTGCAACTGC
ATTCAATGTGATATTTGTGACCTATGGGTTCACCAAAAAAAATGCTCGGG
CCTCAGTCGTGAAGAGTTCCAATCCTTTAGCGAGAATAATAATAATGACA
ACTGGTATTGTCCACGTTGTATCAATAATGCCCTTCCCCTCCCCCCAGAA
GAAAGCATACAGCAGCCTGATGCTGGCGGCCCTAGTCTCAATGAAAACCT
TAAATCTATCCTCTCTAACCTTAATGACATAGTTACTGGTATAACAACCA
GTGAcaatgatgaaaattttgatgacataCAATTCCAATCTAACACTTGC
TCTTATACTACATGTGAAGAATTTAATTCGCTTCTATCTCACAAATCTGA
GGGTCTCTCAGCATTTCACCTCAATATATCTTCCATCTCCAAACACTTTG
ACAAACTTCAAACCCTTTTATCTCAGCTCAACATTAATTTTGACTTTATA
GGTATTTCTGAATCAAGAAATACAACTGATGATGAAAATCTTGCTCACCC
TAAAGAGGGGGAACACGATTTCCCcttagaaaattacaaaaaattcttCA
CCCCTACTGAGTCAACAGCTGGAGGAGTGTCCCTTTACATTTCTAGATCT
CTTATTCCAGTTCCAAGGAAAGATCTAGATAGCATCTGCTATCTAGCTAA
AAATCTTGAGTCCATCTTCGTAGAGATCCCTAGACCTGCACAAAGCAACC
TTGTTGTGGGAACAATATATCGCCATCCATGTATgtcgatagaccttttc
aatACTAACTATATTAAACCTCTAATACACAAATTATCAAaggagaaaaa
acaaattcTC Coding sequence (CDS) from alignment at sc0000237:301711..302870 >TCONS_00016451 ID=TCONS_00016451|Name=TCONS_00016451|organism=Clytia hemisphaerica|type=CDS|length=861bp|location=Sequence derived from alignment at sc0000237:301711..302870 (Clytia hemisphaerica)
ATGTACAACTGTTCAATATGCCTCAAGTCTGTTAGCAACAACTGCAACTG
CATTCAATGTGATATTTGTGACCTATGGGTTCACCAAAAAAAATGCTCGG
GCCTCAGTCGTGAAGAGTTCCAATCCTTTAGCGAGAATAATAATAATGAC
AACTGGTATTGTCCACGTTGTATCAATAATGCCCTTCCCCTCCCCCCAGA
AGAAAGCATACAGCAGCCTGATGCTGGCGGCCCTAGTCTCAATGAAAACC
TTAAATCTATCCTCTCTAACCTTAATGACATAGTTACTGGTATAACAACC
AGTGAcaatgatgaaaattttgatgacataCAATTCCAATCTAACACTTG
CTCTTATACTACATGTGAAGAATTTAATTCGCTTCTATCTCACAAATCTG
AGGGTCTCTCAGCATTTCACCTCAATATATCTTCCATCTCCAAACACTTT
GACAAACTTCAAACCCTTTTATCTCAGCTCAACATTAATTTTGACTTTAT
AGGTATTTCTGAATCAAGAAATACAACTGATGATGAAAATCTTGCTCACC
CTAAAGAGGGGGAACACGATTTCCCcttagaaaattacaaaaaattcttC
ACCCCTACTGAGTCAACAGCTGGAGGAGTGTCCCTTTACATTTCTAGATC
TCTTATTCCAGTTCCAAGGAAAGATCTAGATAGCATCTGCTATCTAGCTA
AAAATCTTGAGTCCATCTTCGTAGAGATCCCTAGACCTGCACAAAGCAAC
CTTGTTGTGGGAACAATATATCGCCATCCATGTATgtcgatagacctttt
caatACTAACTATATTAAACCTCTAATACACAAATTATCAAaggagaaaa
aacaaattcTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00016451-exon-sc0000237-1491911889:301711..302870 | TCONS_00016451-exon-sc0000237-1491911889:301711..302870 | Clytia hemisphaerica | exon |
| TCONS_00016451-exon-sc0000237-1510915933:301711..302870 | TCONS_00016451-exon-sc0000237-1510915933:301711..302870 | Clytia hemisphaerica | exon |
| TCONS_00016451-exon-sc0000237-1575043694:301711..302870 | TCONS_00016451-exon-sc0000237-1575043694:301711..302870 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000237 | supercontig | sc0000237:301711..302870 . |
Annotated Terms
The following terms have been associated with this transcript:
Blast
The following BLAST results are available for this feature:
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