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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00016465 ID=TCONS_00016465|Name=TCONS_00016465|organism=Clytia hemisphaerica|type=transcript|length=2610bp
Tggttaggtcgtagaaaagatgtcacggaaccccaggcttggccccctac
tactGTACAAAATGTATAACGTTTATTTCAGATAACGGGAAAAGATTTCA
AATGACCTTGAAAACAGGTGTCATGAGCGAACGTACAATTTCGTTGCTGA
ATGGTAAACAACTTGTACACGAAGGCGCTTCCTCGACCAAATGTGAACGA
AACATGGATGTGTACATTGGAATGTCTCGGCTGTCTGCAAATTAGCCATC
TTTCAATGGGATGTTTCTTTTTGTTGGAGCGAAACGATTATGAAAAGACG
ATCGGAATTTTTCATACCCTTTTGTTGGTGGCATGTTCAAAGgcgaagaa
gaaaagaaaaagtaacGAGGTAGTTATTCAAATTTGTTCAACAATAATTA
CGTGTGCAATTACAATCATCTGCTTGGTACAAACGAACCGTTTGATTTAT
GACAAAAGAGAAATAGGGTTTCATGTACGTTGAACAGCTTACGGGAGAAC
AAGGGTCAGTAGGGCTAACCGTTTCTACGAAACTGGGCCAAGAAAAATAA
CCATTGCACCAAGACATTACAAAATAGTGCATAGATTGAGGTTAATTGCT
CCTCTGCACGAAGGTTAATCCCAATTGAAAAGGTTGAAGTGATTAAGAAA
GAATTCAAGCAACGTACGTGCAAGCGATTTACTTGGACAGGACAAATACC
TCGACTGACGGTACTAATTACACCTCATTTGTGAAAgacaaaagaaaaga
taaatggTTACTCGCTATTATGAGAAGTTCCGCTACAATAACTGATattt
ctttctccttttcttTTGTCTAATGTCATTTAATGGGTTTGTGACAATAA
AAGGGAGTAATTAAATTGGTTACTGTTTATATGAGGTCGATATCTGCTTT
GTGAAAGCATCAGACAGAAAAAGCAAACGTGCTTAAGCAACAGATGAGTT
ATATTCACTAGAGATTAGAACATTTTTTTACACAACATTTCATACATAGc
aataacaaaacaaaatggttaAAGTTACTTCATCAACCATTGATATTTAT
ACAGTGCCAAGCACAGCACCTTTACAACGCAGACAAATATTGGTGGAACG
CTCACAGAACACACCGTCCACTACCAACCTTCGTCGTAAAGAAATTCGAA
GACGTTCGATTGAAATGTTCTCCGATTCATCCGATTCAGAAACCTCTTTT
TTCGACGATAGCGATGACAATGATGATGTCACCGTCTTTTTCGGAAAACA
CGGCAACAAATTTCAAAACGTTCGTGATGGTGATCGGGAAAACCTCAGGC
CGACCAACACCGACGACGGGAACTGTCGTTACCGACATGAAAAGACGAAA
TCATGTGAAATACTTCTCTCACCAAAAATGCAACGAAGAGCGGGattgaa
aaacagcaaaacaacctccaattttcaaaaaagtgcgTCAATGGACTTTG
GCTTTCATCCACCCACCAGGAATTTCTCAGTACCAAACCTCTCATCAGTG
CGAAAGACTTCCGatgaaaacagatcaaaatgtGGAGAAGAAGACAGATA
TTTATCGAGTCCTCGATTAAAACGAAAACAAATGGACATAACAAAATCTG
CAGCCTTTAAAGAGATCTACGCACACAACTTACGACTCTACAGTGCAGTA
TTAGCTAAGcaAGTTGCATCAACGGGACAAATCGGTCGTGAGATGAACCA
AATCAGAAGGAATAAGCTGAAAGAACGAGttctcaacaacaacaacaaca
acaatataGAAAACAACAATGACAACAATACGAACAAAGAAATGTACAAA
AGATCGAACAGTTTCGCACATTCAGTGGGCGCGGAGGAGAGCGGACGACT
GCAACGAAGCAAACGATCTAACAGTGCCAGTAGTGAACAGATTCGAAAAC
AACTACAAGATGCAGCATTCGTTGCCATGCCAATCCCTCTGTCGAACAGT
GATGACGACATCAGACCCAGTGAAGAAGAATGCTGTTTAAGAGGAAGATC
ACAATCTCTGGTCCCTTCAAGAGATATTTTAAAGAGGATGTCAGCCAAAA
AGACAACCGATGAAAATCAAAACGAGatttgtgacgtcatcagtgAACTA
CCTCAACCTACACAACCACAACGCAGAAATCAAAGAAGTCAAGCAGCCTT
CAAACGTAAAGAACAACTCAAAGAAAAACTGGACTCTTTTGATTTGGTCT
TGGGAAAGACTTCCAACTTCCTTGCCAAAGTGAAGACTGTCAGGAAGGAA
TGAATCTTCTGAAGGAAGGATTTCTTTGCTGGGCGAAGAAGGAAGGAAAG
TAATATAAGATAAAATACCTACGCCaaatatatcataaaatataaaattt
ctaaagaaaaatattgctattcttaacatttttactgcaataaattattt
tttacgtgttatgttatgagaaattatGAAGATTGTACATATTTTAAGGT
TAATATTAGAAAGTTTTCTGTGAAAACAAACTTATTTTATagaaatgatc
aaatcaaacacattcttgaatttaattttgactccctaaaaaatgcaata
aataaacaaatcaaGATGAGATTCTTTCCATTTCAATATTTCCTTTAGGC
TTTATGTGAA Run BLAST on NCBI transcript from alignment at sc0000240:109746..112806+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00016465 ID=TCONS_00016465|Name=TCONS_00016465|organism=Clytia hemisphaerica|type=transcript|length=3061bp|location=Sequence derived from alignment at sc0000240:109746..112806+ (Clytia hemisphaerica)
Tggttaggtcgtagaaaagatgtcacggaaccccaggcttggccccctac
tactGTACAAAATGTATAACGTTTATTTCAGATAACGGGAAAAGATTTCA
AATGACCTTGAAAACAGGTGTCATGAGCGAACGTACAATTTCGTTGCTGA
ATGGTAAACAACTTGTACACGAAGGCGCTTCCTCGACCAAATGTGAACGA
AACATGGATGTGTACATTGGAATGTCTCGGCTGTCTGCAAATTAGCCATC
TTTCAATGGGATGTTTCTTTTTGTTGGAGCGAAACGATTATGAAAAGACG
ATCGGAATTTTTCATACCCTTTTGTTGGTGGCATGTTCAAAGgcgaagaa
gaaaagaaaaagtaacGAGGTAGTTATTCAAATTTGTTCAACAATAATTA
CGTGTGCAATTACAATCATCTGCTTGGTACAAACGAACCGTTTGATTTAT
GACAAAAGAGAAATAGGGTTTCATGTACGTTGAACAGCTTACGGGAGAAC
AAGGGTCAGTAGGGCTAACCGTTTCTACGAAACTGGGCCAAGAAAAATAA
CCATTGCACCAAGACATTACAAAATAGTGCATAGATTGAGGTTAATTGCT
CCTCTGCACGAAGGTTAATCCCAATTGAAAAGGTTGAAGTGATTAAGAAA
GAATTCAAGCAACGTACGTGCAAGCGATTTACTTGGACAGGACAAATACC
TCGACTGACGGTACTAATTACACCTCATTTGTGAAAgacaaaagaaaaga
taaatggTTACTCGCTATTATGAGAAGTTCCGCTACAATAACTGATattt
ctttctccttttcttTTGTCTAATGTCATTTAATGGGTTTGTGACAATAA
AAGGGAGTAATTAAATTGGTTACTGTTTATATGAGGTCGATATCTGCTTT
GTGAAAGCATCAGACAGAAAAAGCAAACGTGCTTAAGCAACAGATGAGTT
ATATTCACTAGAGATTAGAACATTTTTTTACACAACATTTCATACATAGc
aataacaaaacaaaatggttaAAGTTACTTCATCAACCATTGATATTTAT
ACAGTGCCAAGCACAGCACCTTTACAACGCAGACAAATATTGGTGGAACG
CTCACAGAACACACCGTCCACTACCAACCTTCGTCGTAAAGAAATTCGAA
GACGTTCGATTGAAATGTTCTCCGATTCATCCGATTCAGAAACCTCTTTT
TTCGACGATAGCGATGACAATGATGATGTCACCGTCTTTTTCGGAAAACA
CGGCAACAAATTTCAAAACGTTCGTGATGGTGATCGGGAAAACCTCAGGC
CGACCAACACCGACGACGGGAACTGTCGTTACCGACATGAAAAGACGAAA
TCATGTGAAATACTTCTCTCACCAAAAATGCAACGAAGAGCGGGattgaa
aaacagcaaaacaacctccaattttcaaaaaagtgcgTCAATGGACTTTG
GCTTTCATCCACCCACCAGGAATTTCTCAGTACCAAACCTCTCATCAGTG
CGAAAGACTTCCGatgaaaacagatcaaaatgtGGAGAAGAAGACAGATA
TTTATCGAGTCCTCGATTAAAACGAAAACAAATGGACATAACAAAATCTG
CAGCCTTTAAAGAGATCTACGCACACAACTTACGACTCTACAGTGCAGTA
TTAGCTAAGGTAAATAATCCCCAAATATTATTGCTGATTATCctaaatag
aaatagaaattcttttcttttccgTTAACTCAGTTTGAAATCtaatgaat
taaaattgaatacTTTCTAATCATCCTTACGGGTAATTATGCGTTTCGTA
ACAAAAAAGGGGATCTAATGAGGtctttgatttgttttatttttagcaAG
TTGCATCAACGGGACAAATCGGTCGTGAGATGAACCAAATCAGAAGGAAT
AAGCTGAAAGAACGAGttctcaacaacaacaacaacaacaatataGAAAA
CAACAATGACAACAATACGAACAAAGAAATGTACAAAAGATCGAACAGTT
TCGCACATTCAGTGGGCGCGGAGGAGAGCGGACGACTGCAACGAAGCAAA
CGATCTAACAGTGCCAGTAGTGAACAGATTCGAAAACAACTACAAGATGC
AGCATTCGTTGCCATGCCAATCCCTCTGTCGAACAGTGATGACGACATCA
GACCCAGTGAAGAAGAATGCTGTTTAAGAGGAAGATCACAATCTCTGGTC
CCTTCAAGAGATATTTTAAAGAGGGTAAGTGTTTCTACCATTACATATTC
TATTGACTCATTTTCAGTTCTGCTTTTCTCTGAAGAAGAAGGCGAGGAAT
GCTAACGAGGTGAATTTCTCGAACAAACAGACATATCAAGGACTTCCAAA
CGAGGGAAATATGTTTGACAGCAAATGACCTGACGTCATTGCTACTCAGA
AAGTTAATCTATTTTTTATTGAAGTTGGAAGTATATTTAGGAAGTTGGAA
TTGGTTTCTTACATGCTTTCCTTTCTCTATTTGTTTAGATGTCAGCCAAA
AAGACAACCGATGAAAATCAAAACGAGatttgtgacgtcatcagtgAACT
ACCTCAACCTACACAACCACAACGCAGAAATCAAAGAAGTCAAGCAGCCT
TCAAACGTAAAGAACAACTCAAAGAAAAACTGGACTCTTTTGATTTGGTC
TTGGGAAAGACTTCCAACTTCCTTGCCAAAGTGAAGACTGTCAGGAAGGA
ATGAATCTTCTGAAGGAAGGATTTCTTTGCTGGGCGAAGAAGGAAGGAAA
GTAATATAAGATAAAATACCTACGCCaaatatatcataaaatataaaatt
tctaaagaaaaatattgctattcttaacatttttactgcaataaattatt
ttttacgtgttatgttatgagaaattatGAAGATTGTACATATTTTAAGG
TTAATATTAGAAAGTTTTCTGTGAAAACAAACTTATTTTATagaaatgat
caaatcaaacacattcttgaatttaattttgactccctaaaaaatgcaat
aaataaacaaatcaaGATGAGATTCTTTCCATTTCAATATTTCCTTTAGG
CTTTATGTGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00016465-exon-sc0000240-1491911889:109746..111404 | TCONS_00016465-exon-sc0000240-1491911889:109746..111404 | Clytia hemisphaerica | exon |
| TCONS_00016465-exon-sc0000240-1510915933:109746..111404 | TCONS_00016465-exon-sc0000240-1510915933:109746..111404 | Clytia hemisphaerica | exon |
| TCONS_00016465-exon-sc0000240-1575043694:109746..111404 | TCONS_00016465-exon-sc0000240-1575043694:109746..111404 | Clytia hemisphaerica | exon |
| TCONS_00016465-exon-sc0000240-1491911889:111592..111969 | TCONS_00016465-exon-sc0000240-1491911889:111592..111969 | Clytia hemisphaerica | exon |
| TCONS_00016465-exon-sc0000240-1510915933:111592..111969 | TCONS_00016465-exon-sc0000240-1510915933:111592..111969 | Clytia hemisphaerica | exon |
| TCONS_00016465-exon-sc0000240-1575043694:111592..111969 | TCONS_00016465-exon-sc0000240-1575043694:111592..111969 | Clytia hemisphaerica | exon |
| TCONS_00016465-exon-sc0000240-1491911889:112234..112806 | TCONS_00016465-exon-sc0000240-1491911889:112234..112806 | Clytia hemisphaerica | exon |
| TCONS_00016465-exon-sc0000240-1510915933:112234..112806 | TCONS_00016465-exon-sc0000240-1510915933:112234..112806 | Clytia hemisphaerica | exon |
| TCONS_00016465-exon-sc0000240-1575043694:112234..112806 | TCONS_00016465-exon-sc0000240-1575043694:112234..112806 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000240 | supercontig | sc0000240:109746..112806 + |
Blast
The following BLAST results are available for this feature:
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