TCONS_00016468 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00016468
Unique Name	TCONS_00016468
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	2631

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000240:169111..175043+

transcript sequence

>TCONS_00016468 ID=TCONS_00016468|Name=TCONS_00016468|organism=Clytia hemisphaerica|type=transcript|length=2631bp
CTctataaaaatgaaatgtaaACATTTACATGCGGGCACTTTCGTTCTCT
ACTTTCATGAATGTTTCACGACAacacaaaaatgaaaagacaGAAAGAAG
CATGTAATAATAATGGAAATGTGATATGTTCAACTTTCTTCATTTATATG
AAAATCAAGAATGATTTGAATGAGTTGCGGTATTTTTCATGTGTTGCGGT
CTGTGAGAGAAATTTGATTATCAAACAAGAAGCTATTTTCTCATgtgata
aaacattttttttgtaataggGGCTTTAACTCGAAAGATTATAAAATCTA
CTTTTTGTGCAATGAATAAATTATCATTATAAACATCATGTAGTTAGAGA
AAGAGAGAAATGTAACTTTGTATAACATTTGATGTTCTGTGTAAAAAAGA
ATGATGACATGTAAGAAGTGAAAGCTCTCTCCTCACCGTCACCGGCATGA
CCACACGTGATTGTATGGACGACAAGGATGATTACTTAGACGTATTTTAC
GATGCGACTGAAACTCTGTCCGAATACGAATTCGAAGCGTCCGTCCGAAT
CGAAGATGAATCGGAGGAATCGTCCAATGAGGAAGCACCGATGACGGCAA
CGACCGTTGACCACACTGAAAGTAATGGTGTGTTGAGTGTCCCACAGCAA
AATGATGTCAAATTGTCGCCCAGAAGTCAGAAAAGGCTTCCCAAATATAG
GAAGCAACTTCCAGCCACCATGGCATCACGGAACGATTTCAGCGTGTGGA
ACGTGTTGAAACAAGCTGTGGGAAAAGATTTGTCACGCATCACAATGCCA
GTCATCTTCAATGAACCTCTCTCCTTCTTGCAACGAATAAGTGAATATAT
GGATTATGTCGATATCCTTCATAAAGCTACTGAAACTGAAGACTCCCTTG
AACGTTTATTGTTGGTATCAGTGTTCATGATCAGTTGCAACGCTTCCACC
GAATCACGTATTGGAAAACCTTTCAATCCTCTCTTAGGTGAAACTTTCGA
ACTTATCAGGGAAGACATGGACTTCAAGATCTGTGCAGAACAAGTGAGTC
ACCACCCACCTGTCAGTGCTTTGTATGCCGAAAGTGAATCCGGCTTCGAA
TTGACCATGACAATGCAACCGGAACTCAAATTCTGGGGAAAAGATATTGA
AGTCAAACCCAAAGGTGGTGTCACCATCAAAATACCTAAATACAACGACA
TTTACACATTTGATTACATCAGCAGTGGTGTCCACAACATCATCGTTGGA
CAACTCTGGATCGAATTGTACGGTTCATGCACGATACGCAACCAGACAAC
GGGAGAAAGCGCAACCATCACCTTCAAACCTGCCGGTTGGTTCAGCAAGG
AGATGAACCAAGTCGAAGGATACATCTTCAACCAAAAgaaagaaaaagtg
aCATATTTGCGTTCGGATTGGACGAAGTATGTTTGTTCATGCCCGATCAA
ACACGAATCAGCATTACAAAACGCTCTGAAAGGACCACTGAGTGAAGATG
ATATCGAGTTATGTAAAATACCACCTGAAGCAACCATCAATTGGAAAGTC
CGGCCCAAACCCTCTATCACTTCTGAGATGTACATgatgacagaatttgc
catgGGATTGAACGAGTTGTTAGATGAACACAAAGAAGTGGTTGCACCAA
CAGACTGCAGATATCGTCCTGACTTGCGTTGCTTGGAAAACGGTGACATG
GACGCTGCTGCACAAGAAAAGATTCGTCTAGAAGAAGCTCAACGAGCACG
ACGCAAAGAACGCAATGCTACTGGAGGTACTTGGTCTCCAAGGTGGTTTT
CATACGATGTCGTCGACCACTCTGATTCCAAAGAATGGATGTACACCAAC
AAGTATTTCGATAGAGACTTTTCTACTTGTCCACAAATCTATGAATAAtt
actttcctttttttaaacaaaaattcctTCATTTTTAAACCAAAAGCTAT
CCAAAAGTACCACATTTTCATTCACCATTTCACTTGCACGTAATTTTTCT
TTatctgtttcttttctttactcGTTTTCTAGTCTTAGATGTATCTTAGT
GGGGTGCCTTCAAATGTTTTTAAGAATTATTCATTCCTGGGTTTATTCAA
GATTTTGGTGATTATTTAAGACAGTGATGTGTTATATAGGAGAGCGTCAT
CTTATCGAATTGACTTGTTCGAGATTGAGGTTAATTTATTTATGGTAATA
ACACAAACCTCACTGTAGGCCAAATTATCCAAATCCTGCATGTTGGGCTG
TTGTAGGTTTATCGCTCAAATTTGCCATTTCTCGACCCTTTGTTACTTTG
AGTATTTTGTAACAATTAGAATAATGGAATTTTGATATTTATGtagtaat
aaaatttaaaatgcatttttcccaatttttgctttttatttcttagcata
ttttcttcatttctaataataataattgaagattttaattttttttactg
tgAATCAAAATAAGGATCAAGCAATCCTTTTGGCTCAACAAACTGCATGG
TACTGTTTGTGGTAGAGCACATGACATTTACACATTTTATTAGTTATTTT
TTGTAtgtaaaacttaattttgataCTTAATtgcataaacaaataaaaaa
agatttttatgaattaagaaaagtgaaaact

Run BLAST on NCBI

transcript from alignment at sc0000240:169111..175043+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00016468 ID=TCONS_00016468|Name=TCONS_00016468|organism=Clytia hemisphaerica|type=transcript|length=5933bp|location=Sequence derived from alignment at sc0000240:169111..175043+ (Clytia hemisphaerica)
CTctataaaaatgaaatgtaaACATTTACATGCGGGCACTTTCGTTCTCT
ACTTTCATGAATGTTTCACGACAacacaaaaatgaaaagacaGAAAGAAG
CATGTAATAATAATGGAAATGTGATATGTTCAACTTTCTTCATTTATATG
AAAATCAAGAATGATTTGAATGAGTTGCGGTATTTTTCATGTGTTGCGGT
CTGTGAGAGAAATTTGATTATCAAACAAGAAGCTATTTTCTCATgtgata
aaacattttttttgtaataggGGCTTTAACTCGAAAGATTATAAAATCTA
CTTTTTGTGCAATGAATAAATTATCATTATAAACATCATGTAGTTAGAGA
AAGAGAGAAATGTAACTTTGTATAACATTTGATGTTCTGTGTAAAAAAGA
ATGATGACATGTAAGAAGTGAAAGCTCTCTCCTCACCGTCACCGGCATGG
TAATGGGTTGTTTGCATCTCATATTTCGTGTGCTCACAAACTATTTCAAT
TTGACTTTGTTGGAGTTGTTGCAATCTGAGAACGTCTATATACAATGTTG
TGTGGATGCTGGCAATATTTTGTCAATGACATTTctagtgttttttttat
ttggattgggattttgataaaactaaaaatgttacgTCTATGATGTCCTC
TTCATCCTTGGAAAGGGGAAAGGCTAGTTTGCTTTCCAAAGTTATGAACA
AAAAACCGgccaaaacatttcaaaaacgTCATTTTCGAGCAAtacaattt
ttcctctttcttttttacatgaaaaagagtttgtttttgttgtgtTGCAA
ATTGTACTTTCAAAAGTGCGCCTTTACGaatataatgttttttttcgaaa
tagaaCCTTAGCTCAAGCTTCACATTTAGGAAGGACAACTAAGTCTCACT
TTTTACTGTTAAAAgtctataaaaatataatttagatACAGAAGAACACT
GAATACAACCGAGCTATTCAATCAAGCTAAAGATGGCACATTACCTGCCA
CAGGTTTCGTAATAAGGCCTCATAATAATGCACTTCAGGTCCTTTAATGA
TCTTGAATCTCCACAAGTTTGACCTATTTCCACATTTCCTTGCAGACCAC
ACGTGATTGTATGGACGACAAGGATGATTACTTAGACGTATTTTACGATG
CGACTGAAACTCTGTCCGAATACGAATTCGAAGCGTCCGTCCGAATCGAA
GATGAATCGGAGGAATCGTCCAATGAGGAAGCACCGATGACGGCAACGAC
CGTTGACCACACTGAAAGTAATGGTGTGTTGAGTGTCCCACAGCAAAATG
ATGTCAAATTGTCGCCCAGAAGTCAGAAAAGGCTTCCCAAATATAGGTAG
GTTGTTGACTTTCATCTATAAAGAAATATTTCCTGGTTGAAAATgttgac
caatttttccatCTGCATTACTGCTGTATGAAGAAAACGGTACTGCTCAT
TATTTTTTCGTTTGAAAGATCTGACGgttcaaatcaaaagaaattcggAG
CTTTTGCATCGCGGACTGCACAGGACCGTAAAATATATACCCAGAAGAAA
ATCTTGGCTAGCAAGCAAATTTGGAATCTTTTAAGTCATTGCTATAGCCT
CAACTATCATTTTCGGCCTCTGCCATCTATGAGTCTAAAACTGTGTATTA
TAGTCCCGACAAAGATGGACTTAGAGATAGAGAGATTTGAGTCCCGAATA
AGTTTATCGAGAAAGCTGTGATTATACTTAAGTCATTGGTAAAGACATGT
TTATATATCATTCATTCCAACTAATTTACAGGAAGCAACTTCCAGCCACC
ATGGCATCACGGAACGATTTCAGCGTGTGGAACGTGTTGAAACAAGCTGT
GGGAAAAGATTTGTCACGCATCACAATGCCAGTCATCTTCAATGAACCTC
TCTCCTTCTTGCAACGAATAAGTGAATATATGGATTATGTCGATATCCTT
CATAAAGCTACTGAAACTGAAGACTCCCTTGAACGTTTATTGGTACGTAA
ACACTTCCCtctttaattgtttttagttctTGAGGCCCAAGTCATCCGCC
TAGGTAGTCTAGCATTCACACACTGTAAAGAGATAATAACATTATCATGT
AACACACATATCTCTGTAACAACGATTTTTTTTAAACGACCCCAGTCTAT
CTAATAGGCTTACAATCTCCTGTTAGTTCTAGCGCCAAAACTAAGCCCGG
TCCAGACCTTCAATTCACCACTtcaggcttcactttttcttgccctCTGG
TGTGGCCACGTCCTTAGTATAGCTTTTttgtctatgagtgtggtcgctcg
tcTCGCTTATTTAGGCAAATAAAtcatttacttacttactacttacttac
ttacttcaaGCCTTTCGGGCTTCTATTTCATTGGGTTAGAcacaaaaatc
aacaaatttgACAATCTTGATTCCCCATGATTCATTAAAACCGTAAAAAA
ATAGATTCCTTTTTCTTACCCAGTATGCTAACTCGATACTTCATCCTCCC
TCTCTTCACACAGTTGGTATCAGTGTTCATGATCAGTTGCAACGCTTCCA
CCGAATCACGTATTGGAAAACCTTTCAATCCTCTCTTAGGTGAAACTTTC
GAACTTATCAGGTAAGAAAGTCAGAAATGAGTTTTATTTTGTACAATAgc
ctaaaaatgtaaataatcTTATACAATGTGACTTTCCACTGACTCGCTGG
AgatcaaaataataaaagtttCGAATATCATCAAGATTGGAAAAGCTCCT
TTTTTATAGTTGGTGATTTTGCAATGGACTAAATTCTCGCTGGGGCCTGC
GGAAAGGATTCCCCAATTTATCAGTGATATGGTAGCCTACGAagatttca
taattttcatgaCAACATTTTTAGGGAAGACATGGACTTCAAGATCTGTG
CAGAACAAGTGAGTCACCACCCACCTGTCAGTGCTTTGTATGCCGAAAGT
GAATCCGGCTTCGAATTGACCATGACAATGCAACCGGAACTCAAATTCTG
GGGAAAAGATATTGAAGTCAAACCCAAAGGTGGTGTCACCATCAAAATAC
CTAAGTACGTACTATTTACACTTTGTTGCTGATTTGTGTATCCCATTTTG
TCATATTaaaaaagcaaacaatatcTTTGATCTAGGCAAGATAGGTCAAA
GTGGACTATTTTCTTGCTATATATTTCTCCCCTTTTGTAGATACAACGAC
ATTTACACATTTGATTACATCAGCAGTGGTGTCCACAACATCATCGTTGG
ACAACTCTGGATCGAATTGGTGAGATTGAAGAAATATCTCTTCACTAGTA
GTAGTTCTGTAAATTAGTCtttgtttaacgttcatctaacgttaattGAA
TGTTAGGGACGTAAAATGGACGTAGTTATGATGTGATGTACCAACTGGGT
TTGGTTTTAGCCAATCGAAGGTCTTTCGTTTTCTTGAATATCATCTACAA
AGcatattttcttttgtattcaaaAACACATAGTCGGTGTCAGGCTTCGT
TTTATTGAGCTGAACGCTTTTTAACATTAAAACTGTTGTGTTCATTACAG
TACGGTTCATGCACGATACGCAACCAGACAACGGGAGAAAGCGCAACCAT
CACCTTCAAACCTGCCGGTTGGTTCAGCAAGGAGATGAACCAAGTCGAAG
GATACATCTTCAACCAAAAGTAACAACAATTTCCACTGAGCCTTCATTCA
TCGCCATAAATATCAATAAACACATTTCCCTTGAACATATCCTTATAAGA
ACTTAAAAGAGATGGCGAAAGAGGGTTAGAAAACAAAACATTAGCAACAC
AGTCAACAACACAAAAGCTTTCCTTGCATTTTAGATTTGGTCAATATATA
CTTAATATTATCCCAACTCCTGAAGACTAGTATTTTCACACTGATACTGT
TTACGCTTGactctaggaaagaaaaagtgaCATATTTGCGTTCGGATTGG
ACGAAGTATGTTTGTTCATGCCCGATCAAACACGAATCAGCATTACAAAA
CGCTCTGAAAGGACCACTGAGTGAAGATGATATCGAGTTATGTAAAATAC
CACCTGAAGCAACCATCAATTGGAAAGTCCGGCCCAAACCCTCTATCACT
TCTGAGGTAAATCAATTCTTATTTGATATTCTAATGGTGCTCTCAACTCA
GCTCTCAGTGCTGATTGGCCAAATATGAAccgtgtttttattttcattac
agATGTACATgatgacagaatttgccatgGGATTGAACGAGTTGTTAGAT
GAACACAAAGAAGTGGTATGAATCTCTTATGTCATTTCTAGTTGATAGGG
TTTGCGAAGGCCGCGAAAGTACAAAACCCGGTTGCTAAAGATTGAGCTCT
CAGATTGGTCGATTTTTCTGCACTATAAAAGCTTCTAAACAATAGCCCCC
GATCCAATAAAAATGGTTTAATAATATCAGGTGTTGAAAGCTTTACTTTC
ATTAATGGCTTTTCCTTTACCTTTCAGGTTGCACCAACAGACTGCAGATA
TCGTCCTGACTTGCGTTGCTTGGAAAACGGTGACATGGGTAAGATACCCC
CTTTTTACTGCGTTTATGGTTTCAACGACATCTCAAAGTGAATCCTCCCC
TTAAAATAACCGGACTTACATTGCTCAtcaaactttcattttcgtAGACG
CTGCTGCACAAGAAAAGATTCGTCTAGAAGAAGCTCAACGAGCACGACGC
AAAGAACGCAATGCTACTGGAGGTACTTGGTCTCCAAGGTATTTCCTATG
CTTATTCTCGTCACTATAAATATGGAAGAAGCTAAAtatgtattttttaa
atttttctcgtGATATTTTGAGAGCAGTCGTCCCTGTACGTAAGCAACTT
TCGCTACACTTTGACCGCATTATCGAGGATGAAGAGAGATGATACCGGGC
TTTTTCTAGTTCAGAAAAGCACATAGCCACTCGAATTTATTTCTCCTGGA
TCTTCCTGCACGTCTTAAACTTGTTGTTGGTCACAAACCCTATACTAATA
AATTTGAACCATAAAATCATTTCGTATTTACTTTCAGGTGGTTTTCATAC
GATGTCGTCGACCACTCTGATTCCAAAGAATGGATGTACACCAACAAGTA
TTTCGATAGAGACTTTTCTACATGCCCACAAATCTATGAATAATtacttt
ccatttttttaacaaaaatttNTTCTACTTGTCCACAAATCTATGAATAA
ttactttcctttttttaaacaaaaattcctTCATTTTTAAACCAAAAGCT
ATCCAAAAGTACCACATTTTCATTCACCATTTCACTTGCACGTAATTTTT
CTTTatctgtttcttttctttactcGTTTTCTAGTCTTAGATGTATCTTA
GTGGGGTGCCTTCAAATGTTTTTAAGAATTATTCATTCCTGGGTTTATTC
AAGATTTTGGTGATTATTTAAGACAGTGATGTGTTATATAGGAGAGCGTC
ATCTTATCGAATTGACTTGTTCGAGATTGAGGTTAATTTATTTATGGTAA
TAACACAAACCTCACTGTAGGCCAAATTATCCAAATCCTGCATGTTGGGC
TGTTGTAGGTTTATCGCTCAAATTTGCCATTTCTCGACCCTTTGTTACTT
TGAGTATTTTGTAACAATTAGAATAATGGAATTTTGATATTTATGtagta
ataaaatttaaaatgcatttttcccaatttttgctttttatttcttagca
tattttcttcatttctaataataataattgaagattttaattttttttac
tgtgAATCAAAATAAGGATCAAGCAATCCTTTTGGCTCAACAAACTGCAT
GGTACTGTTTGTGGTAGAGCACATGACATTTACACATTTTATTAGTTATT
TTTTGTAtgtaaaacttaattttgataCTTAATtgcataaacaaataaaa
aaagatttttatgaattaagaaaagtgaaaact

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_009198	XLOC_009198	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000240	supercontig	sc0000240:169111..175043 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.16498	0.0671732	0.717868	0.785431	0.0678644	0.223586	0.526851	0.903006	1.02825	0.951335	1.6288	1.04581	0.568603	0.336475	0.344477	0.547784	3.62034	2.93721	0.646126	0.826381	9.43695	9.92355	2.23852	3.48808	1.88922	2.61487	2.04095	3.80794	0.243343	0.1389

Blast

[Close]

BLAST of TCONS_00016468 vs. Swiss-Prot (Human)
Match: OSBL2 (Oxysterol-binding protein-related protein 2 OS=Homo sapiens GN=OSBPL2 PE=1 SV=1)

HSP 1 Score: 367.466 bits (942), Expect = 1.495e-116
Identity = 187/430 (43.49%), Postives = 274/430 (63.72%), Query Frame = 3

Query:  669 PRSQKRLPKYRKQLPATMASRNDFSVWNVLKQAVGKDLSRITMPVIFNEPLSFLQRISEYMDYVDILHKATETEDSLERLLLVSVFMISCNASTESRIGKPFNPLLGETFELIREDMDFKICAEQVSHHPPVSALYAES-ESGFELTMTMQPELKFWGKDIEVKPKGGVTIKIPKYNDIYTFDYISSGVHNIIVGQLWIELYGSCTIRNQTTGESATITFKPAGWFSKEMNQVEGYIFNQKKEKVTYLRSDWTKYVCSC-PIKHESALQNALKG------PLSED------DI--------ELCKIPPEATINWKVRPKPSITSEMYMMTEFAMGLNELLDEHKEVVAPTDCRYRPDLRCLENGDMDAAAQEKIRLEEAQRARRKERNATGGTWSPRWFSYDVVDHSDSKEWMYTNKYFDRDFSTCPQIY 1892
            P  +  + K+R  LPA M SR+DFSVW +LK+ VG +LS+ITMP+ FNEPLSFLQRI+EYM++V ++H+A+     LER+  V+ F +S  AS   R GKPFNPLLGET+ELIRED+ F+  +EQVSHHPP+SA ++E     F    ++ P+LKFWGK +E +P+G +T+++ K+N+ YT+   +  VHN+I+G+LWIE YG+  I N  TG    + FKP G F KE+++VEG+I ++ K+K+  +   WT+ +    P+ +ES  +   +G       L ED      D+        E  ++ P + + W++  +P  +++MY  T F + LNEL    ++ + PTDCR RPD+R +ENG+MD A+QEK RLEE QR  R+ER      W  RWF      ++ + +W+Y   YF+R+FS CP IY
Sbjct:   51 PSQENGIQKHRTSLPAPMFSRSDFSVWTILKKCVGLELSKITMPIAFNEPLSFLQRITEYMEHVYLIHRASCQPQPLERMQSVAAFAVSAVASQWERTGKPFNPLLGETYELIREDLGFRFISEQVSHHPPISAFHSEGLNHDFLFHGSIYPKLKFWGKSVEAEPRGTITLELLKHNEAYTWTNPTCCVHNVIIGKLWIEQYGTVEILNHRTGHKCVLHFKPCGLFGKELHKVEGHIQDKNKKKLFMIYGKWTECLWGIDPVSYESFKKQERRGDHLRKAKLDEDSGKADSDVADDVPVAQETVQVIPGSKLLWRINTRPPNSAQMYNFTSFTVSLNELETGMEKTLPPTDCRLRPDIRGMENGNMDLASQEKERLEEKQREARRERAKEEAEWQTRWFYPGNNPYTGTPDWLYAGDYFERNFSDCPDIY 480

The following BLAST results are available for this feature:

BLAST of TCONS_00016468 vs. Swiss-Prot (Human)

BLAST of TCONS_00016468 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
OSBL2	1.495e-116	43.49	Oxysterol-binding protein-related protein 2 OS=Hom...	[more]

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TCONS_00016468 (transcript) - C. hemisphaerica