TCONS_00016473 (transcript) - C. hemisphaerica

Overview
NameTCONS_00016473
Unique NameTCONS_00016473
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2726

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00016473 ID=TCONS_00016473|Name=TCONS_00016473|organism=Clytia hemisphaerica|type=transcript|length=2726bp
TCTGTTTAGTTTAGCAAACAAGTCACGGTTGGTTGATTTTGCAGCGCCTT
TCAACAAAAAGTTGGATTGGACGAAACGAGAACAAACGTGGTAATGCGCA
TGATTTTTGGTGAAGACGACGTTGAACTGTCACCCTCTTCTTttgaaaga
gaagaaaagaaaTTAATAAGAATAGTGAAATCGAAGAAGATGGAAATGGA
ATAtttgatcaatttattggtCTTCATTTTTACGGTGAAGAATGTTTGGT
GTGTAGGTGAAGAGACGAGTAGCGTGTACACGTCCATTGCTCACATGGAA
CCTTTGTTAGACATTGAGGGACGTCTGGTCAAAATAGCTCGTGAATATTT
ACAGAAAGAACGGCGAAGGCTTGGTGAATTCAAGCAGTTCGCCAAGAGTG
TGGAAGATGCGATGGAGTTATCAAAAGACGAACCATTGAAGTACCTCGGC
AATCCAATCAACTCCTATCTCATCATCAAACGATTTACGTCTGGTTGGAG
AGAGTTAACTTCTAGATTGGAAATTGATGATTCCAAAGTTGATGaaATGA
AGTCGATCATTGAGTCGAACAAATACCAGCTACCGACTTACGAAATCGAT
CTTCTTGGAGCAACGGGTTCCATCATCAGATTGCAAGATACTTATGAATT
GACTGCACGGGAAATTTCAGATGGCAAAATCAAAGGGATTTCACGCTCAG
CGCACCAAATGACAGCAGAAGACTGCATTCACATCGCAGAGTATGCTCAA
CATCACAGACGTTATATTCGTATGGAAGAATGGGCCAAAGAAGCTGAGCG
AATCTTTGATGACCCCTCACTCTCACATCGCATTGGAAATGTTTCAAGAC
TTGCAGTTTATGAAATTCTTGGATGGACAGCCTACTTGTCCAACGATTTA
CCGACTGCATTGAAATATACCAAACTTGTTTTGGAAATCGaacCTAATAA
TGACCTTGCTCTAAAAAACGAGTACATTTACGCATGGCACGTAGAGAATA
ACGAGAAAAGCATTGAGGACGAGGCCACGTGGATGCAAATGGCAAAAATC
ATGCTGGAGAGTTACGGAGGGAAGGAATACGTCCAAGCATGTCGTAAAGT
CAATCCCAAACCGGTCAAAATCAAGGACGCATCCaagttggtttgttttt
tgacCAAAGATTCACCTTTGCTTTTGTTGAAACCGATTCGTACAACGAGA
GTCCATGACAACCCTGAAGTCTTGATTTTCCATAATATCCTCTCTGATAA
AGAAATGACCACACTCAAAAAGTTGGCCACTCCATATCTTCGACAAGCCA
AAGTGGTAGAGGGAGACATCACAGAAGCAAACTACCGAATTGCCAAAACG
ATGTTTTTACAAGAGAACTTTCCAGGTGTGAAGAAAATCAACACAAAATT
GAACAGACGCTTCGAAGCAATGACCGGGCTGAACACAGACACCGCTGAAC
AACTTCAGATCAACAATTACGGTCTGGGAGGACAGTACGAATTCCATCAT
GATCATGGGgaAGAAGGCTCATTACTGGCTAACCATCCAGATGGAAATCG
TTTAGCTACGTTGTTGGTCTATCTAACTGACGTGGAAAGAGGAGGTGAAA
CGGTATTTACAAGACTGGGTATTTCTGTCAGTCCAAACAAGGGAGATGCG
GTTTTTTGGTATAATTTGTTTCGTAATGGCCAAGGAATCGATGATACGTT
GCATGCTTCATGTCCTGTCATCTCTGGTTCAAAGTGGGtggCCAACAAGT
GGTTTCATAACTTTGGAAACGAGTTCCGAAGAAAATGTTTACTACGTGAA
GATATTTGACCATCTTGAATGGAAAAGCAACAGGAGTATTAGTTTTTCAT
cgagtaatttttttcttttttgaatttttaaattgtaCAAATGATATTTG
ATAAATAACCGTAACCATTGGAGGATAGATTCATCCTTTTTATACTTACA
AGTTACAACCTTTTTTTAACAGAAAGATAAAGAGTTGTGGCTCACTGAAG
TTTCACTCATATTACAAACATTGAATAcatcaacgatgtaaaaataatag
ataaccaactacctctagaaggcacttctcccaagagaacaaccattgtt
ttcctattgaaaatagcactctattaaaaagctctgtgtgcagtgcgtgt
tatgcttttagctagattttgacacactttttgacatccaatgaattgat
aaaaaatttgaattgttatttactgcaaattttgaaatttttttcaaaag
ataaaggtaccaatctttagacaaattgactacggatcggcctgatacca
cttaatcttcatctggataaataaacgctcataaaatgctgttatctgaa
aaatatatgtgtgatttgacaTGCGATATCTTacgtatgaaaagtgcatg
aaggttgcctgatacaaaataaacagatgaatgtttatgtttatagaaca
ataatatctaattaaaaaattccttctgtgaggctgcctataggaaaata
cactttttctaacccaaattttggaaaaatatacatcacgtgatcgattt
tgtccaatagaaggttgcaaatgaagcaagtttttatttaattgcacNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNtttttacgatgcaaaatgtcatt
aatatttttacaaccgtaacacggatgttttttgagaatcaaggcaagtt
ggttatctattatttttacatcgttg
Run BLAST on NCBI

transcript from alignment at sc0000240:186280..193295+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00016473 ID=TCONS_00016473|Name=TCONS_00016473|organism=Clytia hemisphaerica|type=transcript|length=7016bp|location=Sequence derived from alignment at sc0000240:186280..193295+ (Clytia hemisphaerica)
TCTGTTTAGTTTAGCAAACAAGTCACGGTTGGTTGATTTTGCAGCGCCTT TCAACAAAAAGTTGGATTGGACGAAACGAGAACAAACGTGGTAATGCGCA TGATTTTTGGTGAAGACGACGTTGAACTGTCACCCTCTTCTTttgaaaga gaagaaaagaaaTTAATAAGAATAGTGAAATCGAAGAAGATGGAAATGGA ATAtttgatcaatttattggtCTTCATTTTTACGGTGAAGAATGTTTGGT GTGTAGGTGAAGAGACGAGTAGCGTGTACACGTCCATTGCTCACATGGAA CCTTTGTTAGACATTGAGGGACGTCTGGTCAAAATAGCTCGTGAATATTT ACAGAAAGAACGGCGAAGGCTTGGTGAATTCAAGCAGTTCGCCAAGAGTG TGGAAGATGCGATGGAGTTATCAAAAGACGAACCATTGAAGTACCTCGGC AATCCAATCAACTCCTATCTCATCATCAAACGATTTACGTCTGGTTGGAG AGAGTTAACTTCTAGATTGGAAATTGATGATTCCAAAGTTGATGGTATGA AAGCATCCTTTTACCTGATTCTTGTATActcggttttttataagaacatg ctaaatttttaaaaatgttctaaaaacgttcttagaatattattattttc accattttatgcGTATTTGTGTGTTAGAGTCCACGAAGCGCCTTATAATG TTCATAACTTGTTCatagcattttggccatcgaagtctcatgttcttata tagtttgttctaatcAAAAACGTGTATTGCTACTGTTTGttctcatgttc ttatatagtttgttcttatcaaaaacGTGTATTGCTACTGTTTGttctca tgttcttatatagtttgttcttatcaaaaacGTGTATTGCTACTGTTTGt tctcatgttcttatatagtttgttcttatcaaaaacGTGTATTGCTACTG TTTGttctcatgttcttatatagtttgttcttatcaaaaacGTGTATTGC TACTGTTTGttctcatgttcttatatagtttgttcttgtcaAAAACGTGT ATTGCTACTGTTTGttctcatgttcttatatagtttgttcttgtcaAAAA CGTGTATTGCTACTGTTTGttctcatgttcttatatagtttgttcttgtc aAAAACGTGTATTGCTACTGTTTGttctcatgttcttatatagtttgttc ttgtcaAAAACGTGTATTGCTACTGTTTGTTCTTGTTGCAATGTTTTGTT GGGTCATTTATGTAACTATAGCGTTGCATTTGCATCATATCATCTTTTTC CCTTTTCTctaaaatcaacttcttcaatattttttttcactttagaaATG AAGTCGATCATTGAGTCGAACAAATACCAGCTACCGACTTACGAAATCGA TCTTCTTGGAGCAACGGGTTCCATCATCAGATTGCAAGATACTTATGAAT TGACTGCACGGGAAATTTCAGATGGCAAAATCAAAGGTAACCTCGAAAGC TGTCCTGGTTTATTTTATCTGAAATGAAAGTTTAAATACAACTAGGTTAG ATGATAAATTTCATTAGATTTGGTTTTAAATTGTGGAAATCAATCATTGT GCTTCAGGGATTTCACGCTCAGCGCACCAAATGACAGCAGAAGACTGCAT TCACATCGCAGAGTATGCTCAACATCACAGACGTTATATTCGTATGGAAG AATGGGCCAAAGAAGCTGAGCGAATCTTTGATGACCCCTCACTCTCACAT CGCATTGGAAATGTTTCAAGACTTGCAGTTTATGAAATTCTTGGATGGAC AGCCTACTTGGTAATTTTAATGCACAGTGCTACccaaaagtttttctttg taGCTCTATACTTTACAACCCTCGGACAACAAATGATCAAAGCAACCTTT TTTCTTCGATAAATACATAATTTCTCAAATCATCTGTTTCCTTTCATTCT TTCATAGTCCAACGATTTACCGACTGCATTGAAATATACCAAACTTGTTT TGGAAATCGGTAAGTCACCGTTTCTTTGTTAACTGTACTAATTCATTCAT TGAGGTTAAAGCTCGAAAGGGATTGAATCGAATTTCTTGGATGTGAAATA AAGCCACATTTCATCCATTCAAAACATGAAATTTCACCGAATTCAGTAAA ATATTTTGGGAACCTTGCTTGAGAAGATTGAGTGCATAAAGTGCCAGCTC AATGGCTATGTAATGTTTAGATCATAAATTTTTTCATATGCTTTTTTTCG TCTTCAacttaaaattgttaaaaacaattatttgtaTTTGGTTTGCACTT CTTTTGGAAAGGAGCTTGTTGAACGTAGAAGTTTGTGATTGTTGAAACTT CTCTTTCAACAATTAGATCCCAAAAATGCAGATGCGTTAAAGAACGAAGA ATTTTATGATTTCTATGTGAGGGAGAACATTGAAAAATGGTTGACTGAGG AGCAATGGGATTACGCTGAAGCTCTCAAACATCTCAAACATTTTCGTGTG GGAACTCTTGTTCAAGCTTGCACGAAAAATAATAAACCAGTATGTACCCT CAACTTGGAAAcgcaaaacaaaaattgtttcaaaaagaaaagtttacCAA CATGCCTTACCAAAAGAAGTACAAATACAAAAAAGAACTATAtgctaaat tttaaaaactatcAATTCACAATTTGAGATATTTatgatgaatttaaaaa atcaattgCAGTTTCTGCAACACTCGATcgaaattttttcttcagaacCT AATAATGACCTTGCTCTAAAAAACGAGTACATTTACGCATGGCACGTAGA GAATAACGAGAAAAGCATTGAGGACGAGGCCACGTGGATGCAAATGGCAA AAATCATGCTGGAGAGTTACGGAGGGAAGGAATACGTCCAAGCATGTCGT AAAGTCAATCCCAAACCGGTCAGTTGTTGTTGGTAAACTTTTGCTGAACG AACATTCCTGTTTTGTGGGTTTCTTGGCTGAATTTACAGTCTTATggatt gaatgttttgattgagTAAAATATTGAGGAGTGGAACATGCTTCacaaga aaaacgaaaaaagaattattttagaATTTGTTTTTCTCAAGGTTTTCTGG ATCTTTATGAACATTTTTAGTAATAATAAACGCCTTATTTTTGTTTTAGG TCAAAATCAAGGACGCATCCaagttggtttgttttttgacCAAAGATTCA CCTTTGCTTTTGTTGAAACCGATTCGTACAACGAGAGTCCATGACAACCC TGAAGTCTTGATTTTCCATAATATCCTCTCTGATAAAGAAATGACCACAC TCAAAAAGTTGGCCACTCCATATGTAAGTTGTCCTCATTGTTACCCGCCA TATTAATTTTGATCAATGGGTCCCATAGTAAgtttgatttttgttggcga TCCGGATAACTCTTTCAGCTATAAAGTTGATGATACCATGATCACTCATT ACTATTAAGTACCTTTTTTTACTTACAGCTTCGACAAGCCAAAGTGGTAG AGGGAGACATCACAGAAGCAAACTACCGAATTGCCAAAACGTAAGCTTGT TTCGATCTCCAACTCTACGACCAAAACTACGACTATCCCTTTCTAtttta tacaaaaacaacaTATTCAAAACAGTCCATTTGTATGTCTATGAAGAACA CCTTCGTAAACCTTTTACGCCTAACTCCGCCCTTGCTATTAATCCCAATG ACTTTTCTCTCAGGATGTTTTTACAAGAGAACTTTCCAGGTGTGAAGAAA ATCAACACAAAATTGAACAGACGCTTCGAAGCAATGACCGGGCTGAACAC AGACACCGCTGAACAACTTCAGGTAATATGAATATCATTTGTACGTCGCa tatgttttccaaaaaaatcaaaatgttgaaaacGTATTTTAAGTTCATGT ACTTTGCATGCAATGATCAGATGGCTTTACTTTGAATTCTTCTTATCATT TTCCGATTATAGATCAACAATTACGGTCTGGGAGGACAGTACGAATTCCA TCATGATCATGGGGTAAGAAAGTCTTCTTTAACTCGTATCATACttgtga atgaatgaatgaatggatgaaagaatgaatgaatggTGAGAGTTGACCGG TTCTTCATTATAATATGGGTACAAACCATGTTACAATGACTTTTCCTTTC TCTTCATAAACTGAATCTCACCACACCACGCATCTCTTTCTCATAGACCC AACAGGATTTAGCCAGTTAGGGTAAAAATCACAGACTGATGATCGAGGAC TGATGATGGATGCTTCCTTGTTTTTGATGGCTATGTTGATTTAAATCCCG TTGATTTTTAATTAGCCTGAAAATTCAATGTGGACGggaaaatagcacaa tattttgtagTGATGATTCTTTTGCCTGATTATTTTCAACGTGGACAAAA ATGAGAGTATGATTGTCTAGTGAGGGCGATAGCTTCTTTCCAGTAGGATG GGGTCCACCGGGTTTATGAGAAGGGGTGTAGTTCTTTCTCTTAATGAGCt tgtttacttttgattttttaggaAGAAGGCTCATTACTGGCTAACCATCC AGATGGAAATCGTTTAGCTACGTTGTTGGTCTATGTAAGCCACCTTCATT TATATGCACTTCGTCCCAATCCAGTGTCCGTTCTATTCGTAAAAGTGTTT AAATAACTTGTTCGTCATCTTTCTTTCAGCTAACTGACGTGGAAAGAGGA GGTGAAACGGTATTTACAAGACTGGGTATTTCTGTCAGTCCAAACAAGGT CTGTTCAATTTCTACATTCAGTTTCCACTTTCATTTTCTACGTTCATTCT CTACCCTAACACGACACTTTTTATTGACCGCTTAGGAACATTTTGAATTA ACATTTGGAAATTATCACTATTTAATATAAGTCACACCAAATAAACGCGT AATTCAGCTTAGGGAGACAATTTAACAACAGATTTTACCTTTCAGGGAGA TGCGGTTTTTTGGTATAATTTGTTTCGTAATGGCCAAGGAATCGATGATA CGTTGCATGCTTCATGTCCTGTCATCTCTGGTTCAAAGTGGGGTGAGttt cctttttttcatttaatatTGGTTTTATTGTGGAAATTCTTGGGAAGGTT GTAGCGTAACGTAGTCCCTCTCGTATTAAGGTATTCGAAAAAATCCTTTT GACCCATTTAGATAATAataaagtctgttccaaaagaATTGGTAGTCCGA TTTCGGTAGGAAACTTTGAACTGCTACTTATTTTTGGCCGTTTGTAACCT GATTTTaaatagtctgaatcgcagaacTCTACAAAACCCGCTGGTTATAG TATAAAATATAAGACCGAAGCCGTGAGCCTAACTTTTAAAGGCTGTAACT TTGGATccagtttcattttcaaaaatccttttaggagagaccaatttaat ttgtttttctacgGGCGCGACCGACCCAGtatttgctgcaaacaaaaaat aataatatttttattcctGTGCCACAAATTTCCAATAATAAGTAgtcatt gaaaaaatttatgcttaaaaaaaaaagttgaaaaaagaatCTAGAATCAT GAAATCTATGCACGAAAGTTTTTATTACAAACTTcatcaaattgaaaata tgacTTAAAGCCTGATTACTTACCTTAattaatgaaaatcttatttttat tttaccgaccgaccgacttatattttgctaacgatctgcccgtagaacaa caaatttaattggtctcgccttatagCAATGAATCAAAATATGCGAACTg ccattttttttggaatagactCTCAGTAATGTATTCGTTCAATTCAAGTT AATCTAGCAATCTAATGCTCATGTTAACCGgtacaaaaaataaatgacCA TTTGGTATGggcatttttgaaaataagaactGAGTGCGGAATATGAATTG CGTATACGTGTACATTTCATgatgaaactgatttttgtctaTATATACAA AGCAGACCTGGTAAACGTGAGATGCATTCTGGTATAGAGAGCAGTATTAT AATTTTTGTCCatgtatttttgtttcagtggCCAACAAGTGGTTTCATAA CTTTGGAAACGAGTTCCGAAGAAAATGTTTACTACGTGAAGATATTTGAC CATCTTGAATGGAAAAGCAACAGGAGTATTAGTTTTTCATcgagtaattt ttttcttttttgaatttttaaattgtaCAAATGATATTTGATAAATAACC GTAACCATTGGAGGATAGATTCATCCTTTTTATACTTACAAGTTACAACC TTTTTTTAACAGAAAGATAAAGAGTTGTGGCTCACTGAAGTTTCACTCAT ATTACAAACATTGAATAcatcaacgatgtaaaaataatagataaccaact acctctagaaggcacttctcccaagagaacaaccattgttttcctattga aaatagcactctattaaaaagctctgtgtgcagtgcgtgttatgctttta gctagattttgacacactttttgacatccaatgaattgataaaaaatttg aattgttatttactgcaaattttgaaatttttttcaaaagataaaggtac caatctttagacaaattgactacggatcggcctgataccacttaatcttc atctggataaataaacgctcataaaatgctgttatctgaaaaatatatgt gtgatttgacaTGCGATATCTTacgtatgaaaagtgcatgaaggttgcct gatacaaaataaacagatgaatgtttatgtttatagaacaataatatcta attaaaaaattccttctgtgaggctgcctataggaaaatacactttttct aacccaaattttggaaaaatatacatcacgtgatcgattttgtccaatag aaggttgcaaatgaagcaagtttttatttaattgcacNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNtttttacgatgcaaaatgtcattaatattttta caaccgtaacacggatgttttttgagaatcaaggcaagttggttatctat tatttttacatcgttg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009200XLOC_009200Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016473-exon-sc0000240-1491911889:186280..186823TCONS_00016473-exon-sc0000240-1491911889:186280..186823Clytia hemisphaericaexon
TCONS_00016473-exon-sc0000240-1510915933:186280..186823TCONS_00016473-exon-sc0000240-1510915933:186280..186823Clytia hemisphaericaexon
TCONS_00016473-exon-sc0000240-1575043694:186280..186823TCONS_00016473-exon-sc0000240-1575043694:186280..186823Clytia hemisphaericaexon
TCONS_00016473-exon-sc0000240-1491911889:187625..187765TCONS_00016473-exon-sc0000240-1491911889:187625..187765Clytia hemisphaericaexon
TCONS_00016473-exon-sc0000240-1510915933:187625..187765TCONS_00016473-exon-sc0000240-1510915933:187625..187765Clytia hemisphaericaexon
TCONS_00016473-exon-sc0000240-1575043694:187625..187765TCONS_00016473-exon-sc0000240-1575043694:187625..187765Clytia hemisphaericaexon
TCONS_00016473-exon-sc0000240-1491911889:187887..188089TCONS_00016473-exon-sc0000240-1491911889:187887..188089Clytia hemisphaericaexon
TCONS_00016473-exon-sc0000240-1510915933:187887..188089TCONS_00016473-exon-sc0000240-1510915933:187887..188089Clytia hemisphaericaexon
TCONS_00016473-exon-sc0000240-1575043694:187887..188089TCONS_00016473-exon-sc0000240-1575043694:187887..188089Clytia hemisphaericaexon
TCONS_00016473-exon-sc0000240-1491911889:188237..188288TCONS_00016473-exon-sc0000240-1491911889:188237..188288Clytia hemisphaericaexon
TCONS_00016473-exon-sc0000240-1510915933:188237..188288TCONS_00016473-exon-sc0000240-1510915933:188237..188288Clytia hemisphaericaexon
TCONS_00016473-exon-sc0000240-1575043694:188237..188288TCONS_00016473-exon-sc0000240-1575043694:188237..188288Clytia hemisphaericaexon
TCONS_00016473-exon-sc0000240-1491911889:189025..189197TCONS_00016473-exon-sc0000240-1491911889:189025..189197Clytia hemisphaericaexon
TCONS_00016473-exon-sc0000240-1510915933:189025..189197TCONS_00016473-exon-sc0000240-1510915933:189025..189197Clytia hemisphaericaexon
TCONS_00016473-exon-sc0000240-1575043694:189025..189197TCONS_00016473-exon-sc0000240-1575043694:189025..189197Clytia hemisphaericaexon
TCONS_00016473-exon-sc0000240-1491911889:189429..189602TCONS_00016473-exon-sc0000240-1491911889:189429..189602Clytia hemisphaericaexon
TCONS_00016473-exon-sc0000240-1510915933:189429..189602TCONS_00016473-exon-sc0000240-1510915933:189429..189602Clytia hemisphaericaexon
TCONS_00016473-exon-sc0000240-1575043694:189429..189602TCONS_00016473-exon-sc0000240-1575043694:189429..189602Clytia hemisphaericaexon
TCONS_00016473-exon-sc0000240-1491911889:189758..189819TCONS_00016473-exon-sc0000240-1491911889:189758..189819Clytia hemisphaericaexon
TCONS_00016473-exon-sc0000240-1510915933:189758..189819TCONS_00016473-exon-sc0000240-1510915933:189758..189819Clytia hemisphaericaexon
TCONS_00016473-exon-sc0000240-1575043694:189758..189819TCONS_00016473-exon-sc0000240-1575043694:189758..189819Clytia hemisphaericaexon
TCONS_00016473-exon-sc0000240-1491911889:189993..190101TCONS_00016473-exon-sc0000240-1491911889:189993..190101Clytia hemisphaericaexon
TCONS_00016473-exon-sc0000240-1510915933:189993..190101TCONS_00016473-exon-sc0000240-1510915933:189993..190101Clytia hemisphaericaexon
TCONS_00016473-exon-sc0000240-1575043694:189993..190101TCONS_00016473-exon-sc0000240-1575043694:189993..190101Clytia hemisphaericaexon
TCONS_00016473-exon-sc0000240-1491911889:190242..190292TCONS_00016473-exon-sc0000240-1491911889:190242..190292Clytia hemisphaericaexon
TCONS_00016473-exon-sc0000240-1510915933:190242..190292TCONS_00016473-exon-sc0000240-1510915933:190242..190292Clytia hemisphaericaexon
TCONS_00016473-exon-sc0000240-1575043694:190242..190292TCONS_00016473-exon-sc0000240-1575043694:190242..190292Clytia hemisphaericaexon
TCONS_00016473-exon-sc0000240-1491911889:190801..190863TCONS_00016473-exon-sc0000240-1491911889:190801..190863Clytia hemisphaericaexon
TCONS_00016473-exon-sc0000240-1510915933:190801..190863TCONS_00016473-exon-sc0000240-1510915933:190801..190863Clytia hemisphaericaexon
TCONS_00016473-exon-sc0000240-1575043694:190801..190863TCONS_00016473-exon-sc0000240-1575043694:190801..190863Clytia hemisphaericaexon
TCONS_00016473-exon-sc0000240-1491911889:190959..191027TCONS_00016473-exon-sc0000240-1491911889:190959..191027Clytia hemisphaericaexon
TCONS_00016473-exon-sc0000240-1510915933:190959..191027TCONS_00016473-exon-sc0000240-1510915933:190959..191027Clytia hemisphaericaexon
TCONS_00016473-exon-sc0000240-1575043694:190959..191027TCONS_00016473-exon-sc0000240-1575043694:190959..191027Clytia hemisphaericaexon
TCONS_00016473-exon-sc0000240-1491911889:191225..191321TCONS_00016473-exon-sc0000240-1491911889:191225..191321Clytia hemisphaericaexon
TCONS_00016473-exon-sc0000240-1510915933:191225..191321TCONS_00016473-exon-sc0000240-1510915933:191225..191321Clytia hemisphaericaexon
TCONS_00016473-exon-sc0000240-1575043694:191225..191321TCONS_00016473-exon-sc0000240-1575043694:191225..191321Clytia hemisphaericaexon
TCONS_00016473-exon-sc0000240-1491911889:192308..193295TCONS_00016473-exon-sc0000240-1491911889:192308..193295Clytia hemisphaericaexon
TCONS_00016473-exon-sc0000240-1510915933:192308..193295TCONS_00016473-exon-sc0000240-1510915933:192308..193295Clytia hemisphaericaexon
TCONS_00016473-exon-sc0000240-1575043694:192308..193295TCONS_00016473-exon-sc0000240-1575043694:192308..193295Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000240supercontigsc0000240:186280..193295 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.98933 0.803616 1.35672 3.22801 4.85835 4.18087 14.4659 13.3772 5.99373 3.5335 9.1536 8.82382 8.6584 5.9695 6.70065 9.45563 13.2964 10.947 0.00031211 2.23818 5.94802 11.9772 5.50138 6.97741 6.52904 8.42978 5.63828 3.69935 5.54983 4.47155
Blast
BLAST of TCONS_00016473 vs. Swiss-Prot (Human)
Match: P4HA1 (Prolyl 4-hydroxylase subunit alpha-1 OS=Homo sapiens GN=P4HA1 PE=1 SV=2)

HSP 1 Score: 286.574 bits (732), Expect = 2.300e-85
Identity = 188/529 (35.54%), Postives = 288/529 (54.44%), Query Frame = 1
Query:  277 YTSIAHMEPLLDIEGRLVKIAREYLQKERRRLGEFKQFAKSVEDAMELSKDEPLKYLGNPINSYLIIKRFTSGWRELTSRLEIDDSKVDEMKSIIESNKYQLPTYEIDLLGATGSIIRLQDTYELTAREISDGKIKGISRSAHQMTAEDCIHIAEYAQHHRRYIRMEEWAKEAERIFDDPSLSHRIGNVSRLAVYEILGWTAYLSNDLPTALKYTKLVLEIEPNNDLALKN----EYIYAWHVENNEKSIEDEATWMQMAK---IMLESYGGKE-YVQACR----KVNPKPVKIKDASKLVCFLTKDS--PLLLLKPIRTTRVHDNPEVLIFHNILSDKEMTTLKKLATPYLRQAKV---VEGDITEANYRIAKTMFLQ--ENFPGVKKINTKLNRRFEAMTGLNTDTAEQLQINNYGLGGQYEFHHDHG--EEGSLLANHPDGNRLATLLVYLTDVERGGETVFTRLGISVSPNKGDAVFWYNLFRNGQGIDDTLHASCPVISGSKWVANKWFHNFGNEFRRKCLLRE 1800
            +TSI  M  L+  E  LV   ++Y++ E  +L + K++A+ ++     +  +P  ++G+P+N++ ++KR  + W EL + +  D S  D   S +   +   P  E D +GA  +++RLQDTY L    IS G + G+   +  +TAEDC  + + A     Y   E W ++A R  D+  +S     + +++V + L +  Y   DL  AL  TK +LE++P +  A  N    EYI A   + N+ + +D++      K   + ++    ++ Y   CR    K+ P+  K     KL C     +  P  +L P +     D P ++ FH+I+SD E+  +K LA P LR+A +   + GD+   +YRI+K+ +L   EN P V +IN     R + +TGL+  TAE+LQ+ NYG+GGQYE H D    +E         GNR+AT L Y++DV  GG TVF  +G SV P KG AVFWYNLF +G+G   T HA+CPV+ G+KWV+NKW H  G EFRR C L E
Sbjct:   22 FTSIGQMTDLIHTEKDLVTSLKDYIKAEEDKLEQIKKWAEKLDRLTSTATKDPEGFVGHPVNAFKLMKRLNTEWSELENLVLKDMS--DGFISNLTIQRQYFPNDE-DQVGAAKALLRLQDTYNLDTDTISKGNLPGVKHKSF-LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEIS----TIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLKYFEYIMAKEKDVNKSASDDQSDQKTTPKKKGVAVDYLPERQKYEMLCRGEGIKMTPRRQK-----KLFCRYHDGNRNPKFILAPAKQEDEWDKPRIIRFHDIISDAEIEIVKDLAKPRLRRATISNPITGDLETVHYRISKSAWLSGYEN-PVVSRINM----RIQDLTGLDVSTAEELQVANYGVGGQYEPHFDFARKDEPDAFKELGTGNRIATWLFYMSDVSAGGATVFPEVGASVWPKKGTAVFWYNLFASGEGDYSTRHAACPVLVGNKWVSNKWLHERGQEFRRPCTLSE 532          
The following BLAST results are available for this feature:
BLAST of TCONS_00016473 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
P4HA12.300e-8535.54Prolyl 4-hydroxylase subunit alpha-1 OS=Homo sapie... [more]
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