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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00016487 ID=TCONS_00016487|Name=TCONS_00016487|organism=Clytia hemisphaerica|type=transcript|length=1538bp
AATTCTATAAAGAAATTCGGTTAAGCTTCTTCACCAGTCAAGATGATAGG
ATTGAATGAACCGCTGGACATTGCATACACCACACTGTACATCATCTCTC
TCATCGGCAACTTGATCTTCATCTTATACCTGCTGGTGCAACAATTAAAG
ATATCAGTGGACCGTTTGTTGTTCACGCAATCCATCGTTCAACTCATCCT
CGTCATCCTCGCCGTTCCCTTCGTTCACGATGCATGGGTGCAAGAACCTT
ACCAATTTGGTGACTTTGCTTGCCGTTTCGTGACGCCGTTACATGATTTG
TTCGAATTTTCGCAAGGTTTCATGTACGCAGTGATCGGCTGGTTTATCGC
ACAAAAGTTGAAAGGGGACCAAGAGATTAAATGGAAAGTTCTCTCTTCAT
TGATCGGTTTACATCTCTTATGTATTGTATTTCTTTTACCGACGTTCGGT
GTTTGGCACCTCGTGTATGTCCCTTCCTCTCAAACACATCATTGCAAAGA
GGCATGGTCATATGAAGCTGAAATTATGCACCGAATCAGCCGAGTATTTT
TATTCGCTATCCCAACAGGCATCGCCTTATATTATTACATCAAAGGTTTT
CGCATCGTGAAATTTATCACCAATTTCTTGAGCCTCAAAAAGTCGAACGC
ACGTTAccaaagctttgcaaaagtcaTTTCAGACGTTGGTCATACTCCCG
AATCTCATCTTTGCTTTGGTGAATCAGAAGAAATGAACTTAGAGATGAAC
CACTTGTATCAAAAGCATAATAGCATCTCAACCATTTCAAAAGATGACGT
CACCGCCAACATTTCTGTGCAGATCTTTACCAACGAAGTGGAGATTGATA
GGATCGATTCGCAGTCTCCTCTTTGGCGCGGAAAACCAAAGGCTGGGGAG
TACCAAAAGATGGTGGTCTCCATAAAGTGGTTCCGCTACACTCGCAATCT
TTATCAGGCTTTCCTTGTGTCAGTCATTTTCTACGCTGTCGCCTCCGCCC
CTTACTTCGTTTTTCTTCTCTACACGACCGACCGAAAAACCGAGTTTACG
AACACGGAAAAGTGGGCTGCTTCTATCATCTTTTTTATCCGATACTCCAC
TTGTTTGGTGAACCCTTGGATTTTCATGCTtggtattttcaaatttcgta
AGAGTTTGTTTGGCAAATGTTATCGACAGCAACGAGACTTCGTCCTTCTA
CCGGATTCGGTGAAAGAAGATACTTCGTGAATATGAAATAATATCAATAT
GTGCGCCATTTCGCATTACTTCAGGATAAATGAATGAGCTGAAATGaatc
aatattttaaacaatttaaagTCTGGTCACCAAGTTCGTAACATAGGGTT
TACTGTTATGTTATATGATAAGTACAGGAAAGTTTACGGAAAAATATATC
TACAAACATAGATCGCTGCTTTTTTCTCCCTTGTCAAAGATTGATGTTCG
ACAAACCTCTATTGAtagactttttggacctacctccgggtgccccggtg
gaggttctataaattaacccatgtccgtccgttcgttc Run BLAST on NCBI transcript from alignment at sc0000240:127415..129137- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00016487 ID=TCONS_00016487|Name=TCONS_00016487|organism=Clytia hemisphaerica|type=transcript|length=1723bp|location=Sequence derived from alignment at sc0000240:127415..129137- (Clytia hemisphaerica)
AATTCTATAAAGAAATTCGGTTAAGGTGAACGCCTAATTAACAGATTACC
TCGTCTTGTAAAAATTCTTCAACGTTAAGCCAGAGAATGTTGATGTATGA
AGTTTAAACCTTTTAGCGTTTATTCTATGGTCTCGTGTAAATGTCATTTT
TTTGTGGAAAAGAGGTTGATAACACCTCATAACAACACCTCGCTTCTCTT
CTTCTTTTAGCTTCTTCACCAGTCAAGATGATAGGATTGAATGAACCGCT
GGACATTGCATACACCACACTGTACATCATCTCTCTCATCGGCAACTTGA
TCTTCATCTTATACCTGCTGGTGCAACAATTAAAGATATCAGTGGACCGT
TTGTTGTTCACGCAATCCATCGTTCAACTCATCCTCGTCATCCTCGCCGT
TCCCTTCGTTCACGATGCATGGGTGCAAGAACCTTACCAATTTGGTGACT
TTGCTTGCCGTTTCGTGACGCCGTTACATGATTTGTTCGAATTTTCGCAA
GGTTTCATGTACGCAGTGATCGGCTGGTTTATCGCACAAAAGTTGAAAGG
GGACCAAGAGATTAAATGGAAAGTTCTCTCTTCATTGATCGGTTTACATC
TCTTATGTATTGTATTTCTTTTACCGACGTTCGGTGTTTGGCACCTCGTG
TATGTCCCTTCCTCTCAAACACATCATTGCAAAGAGGCATGGTCATATGA
AGCTGAAATTATGCACCGAATCAGCCGAGTATTTTTATTCGCTATCCCAA
CAGGCATCGCCTTATATTATTACATCAAAGGTTTTCGCATCGTGAAATTT
ATCACCAATTTCTTGAGCCTCAAAAAGTCGAACGCACGTTACCAAAGCTT
TGCAAAAGTCATTTCAGACGTTGGTCATACTCCCGAATCTCATCTTTGCT
TTGGTGAATCAGAAGAAATGAACTTAGAGATGAACCACTTGTATCAAAAG
CATAATAGCATCTCAACCATTTCAAAAGATGACGTCACCGCCAACATTTC
TGTGCAGATCTTTACCAACGAAGTGGAGATTGATAGGATCGATTCGCAGT
CTCCTCTTTGGCGCGGAAAACCAAAGGCTGGGGAGTACCAAAAGATGGTG
GTCTCCATAAAGTGGTTCCGCTACACTCGCAATCTTTATCAGGCTTTCCT
TGTGTCAGTCATTTTCTACGCTGTCGCCTCCGCCCCTTACTTCGTTTTTC
TTCTCTACACGACCGACCGAAAAACCGAGTTTACGAACACGGAAAAGTGG
GCTGCTTCTATCATCTTTTTTATCCGATACTCCACTTGTTTGGTGAACCC
TTGGATTTTCATGCTTGGTATTTTCAAATTTCGTAAGAGTTTGTTTGGCA
AATGTTATCGACAGCAACGAGACTTCGTCCTTCTACCGGATTCGGTGAAA
GAAGATACTTCGTGAATATGAAATAATATCAATATGTGCGCCATTTCGCA
TTACTTCAGGATAAATGAATGAGCTGAAATGAATCAATATTTTAAACAAT
TTAAAGTCTGGTCACCAAGTTCGTAACATAGGGTTTACTGTTATGTTATA
TGATAAGTACAGGAAAGTTTACGGAAAAATATATCTACAAACATAGATCG
CTGCTTTTTTCTCCCTTGTCAAAGATTGATGTTCGACAAACCTCTATTGA
TAGACTTTTTGGACCTACCTCCGGGTGCCCCGGTGGAGGTTCTATAAATT
AACCCATGTCCGTCCGTTCGTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00016487-exon-sc0000240-1575043694:129113..129137 | TCONS_00016487-exon-sc0000240-1575043694:129113..129137 | Clytia hemisphaerica | exon |
| TCONS_00016487-exon-sc0000240-1575043694:127415..128927 | TCONS_00016487-exon-sc0000240-1575043694:127415..128927 | Clytia hemisphaerica | exon |
| TCONS_00016487-exon-sc0000240-1510915933:129113..129137 | TCONS_00016487-exon-sc0000240-1510915933:129113..129137 | Clytia hemisphaerica | exon |
| TCONS_00016487-exon-sc0000240-1510915933:127415..128927 | TCONS_00016487-exon-sc0000240-1510915933:127415..128927 | Clytia hemisphaerica | exon |
| TCONS_00016487-exon-sc0000240-1491911889:129113..129137 | TCONS_00016487-exon-sc0000240-1491911889:129113..129137 | Clytia hemisphaerica | exon |
| TCONS_00016487-exon-sc0000240-1491911889:127415..128927 | TCONS_00016487-exon-sc0000240-1491911889:127415..128927 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000240 | supercontig | sc0000240:127415..129137 - |
Blast
The following BLAST results are available for this feature:
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