TCONS_00016491 (transcript) - C. hemisphaerica

Overview
NameTCONS_00016491
Unique NameTCONS_00016491
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1761

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00016491 ID=TCONS_00016491|Name=TCONS_00016491|organism=Clytia hemisphaerica|type=transcript|length=1761bp
CTGTGGCAACTCTACCCTTCACACAAGATCCCAATATCAGACTACATCCA
AATCGAATGAAAGCCAAGAAGGTGTACGACCAACAAGTCAAGAAGTTATC
CTCTTACCCGAATGACAAACGTGACGTCATCGAATCTGAGGCTAAGCTCC
AAAAACTTGGCCACGTCGACTTCATCAGGAACCTTCATCNAATGACAAAC
GTGACGTCATCGAATCTGAGGCTAAGCTCCAAAAACTTGGCCACGTCGAC
TTCGTCAGGAACCTTCATCCCAACATTCAAAACCAATTGGCACACAGccc
aattcaaaactttataccATGGAGGGCAGTTTGGAAAGCAAGCTCCGTCA
CAACACCTTGCCGAGTCGTTTTCGACGCATCACAACCAACAAACAACGGC
TACAGTCTTAACTCAATTCTCGCAAAGGGCACCAACGGTATGAATAAACT
TGTTGAAATCCTCATTCGCTGGTACTGTCACAAAGTCGCATTTCATACTG
ACGTAACCGTAAGTATCGATCGACGTATCCGAACTAAACTTCGCCAAGAA
ACGACGAGGAAAGAAACCAGATGAGAAAGTTGGTATCGTTCCATCCACCC
TCACAAGGCGTCATTGCGTATCCAAGGTGCACGAGCTATTCGACATCACT
GGGAAGATCACACCAATCACTGCATCACTCAGGATTGATCTCCACAACAT
CGTACAACGTGGTTTGAAGTGGGACGATGCCATACCGGACAACCTTAGAT
CCATATGGGAATCCAACTTCGAAATGATTCAAGAGATAAAATCAATTCGA
TACGCCAGAACTGCAGAACCATTGTGCCTGATGATGCAGCCAACTTAATG
ATTGAGACCATCGACTTCGGTGATGCAACCAAAGAGATGGCAGCCGTTGC
TATCTATGCCAGAATACTACATTTAAACGGTGAATATTCGTGTCAACTCG
TATTTgctcgatcaaagattttgtcaTCATCAACTCAACCTCGAGCTGAA
CTCGAAGCAGCTGTCCTCAACACTCATACTTCCGAAGTCGTCAAACGTGC
ATTGAAGTCCAAACACAACGGATCAATCAAATTGACAGACAGCACCATCG
TTCTACACTGGATCAGTAATGATGAAATCTCCCTCAAGCCATTCGTTCGA
AATCGAATAATCGAAATCATTCGACACACAACTCATGAAGATTGGCAACA
CATCGACACAAACAACATGCTCGCAGATATTGCAGCTCGTAAAGGTgcaa
caatagacgatatcagcAGCAAATCAACATGGATCAATGGGCACTCCTGG
CTCAGGGGTGACAAATCAACCTTCCCAACCAAAACTCTCTACGTAAACAA
TCATCTGCACCAACCTACGAATTCAAATCAAATGGACGACTGACTGACGA
TCAACTCAAGCAAGCCGAAACGTACTTCTGGCGCAAGGGTACTGAAGAGG
TGAAACAGTTCGTCAGTAAAGAGAAGTACAAATGCATATCAACAGAGATT
GACGGCATCCTAACGTATACTGGTCGTATCATGCCAACAGACGAAATCAA
CGTGATCACTCCGATGACGAAAGTGATGAAAGATCTACATCAAACGACCT
TCTGCGTTCCAATCATCAGCAAACATTCACCCATCGCCTACGCCATCCTG
AGTGACGTTCACTGGCACAACAAAGTCGTCAAACATTCCGGCATCGAAGC
TACGTTATGCTATGCATCCCAGAAGGCATTCATCATTGAAGGACGCGAAG
TTGCAAAGACG
Run BLAST on NCBI

protein sequence of TCONS_00016491-protein

>TCONS_00016491-protein ID=TCONS_00016491-protein|Name=TCONS_00016491-protein|organism=Clytia hemisphaerica|type=polypeptide|length=212bp
MGIQLRNDSRDKINSIRQNCRTIVPDDAANLMIETIDFGDATKEMAAVAI
YARILHLNGEYSCQLVFARSKILSSSTQPRAELEAAVLNTHTSEVVKRAL
KSKHNGSIKLTDSTIVLHWISNDEISLKPFVRNRIIEIIRHTTHEDWQHI
DTNNMLADIAARKGATIDDISSKSTWINGHSWLRGDKSTFPTKTLYVNNH
LHQPTNSNQMDD
Run BLAST on NCBI

transcript from alignment at sc0000240:279141..281122-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00016491 ID=TCONS_00016491|Name=TCONS_00016491|organism=Clytia hemisphaerica|type=transcript|length=1982bp|location=Sequence derived from alignment at sc0000240:279141..281122- (Clytia hemisphaerica)
CTGTGGCAACTCTACCCTTCACACAAGATCCCAATATCAGACTACATCCA
AATCGAATGAAAGCCAAGAAGGTGTACGACCAACAAGTCAAGAAGTTATC
CTCTTACCCGAATGACAAACGTGACGTCATCGAATCTGAGGCTAAGCTCC
AAAAACTTGGCCACGTCGACTTCATCAGGAACCTTCATCNAATGACAAAC
GTGACGTCATCGAATCTGAGGCTAAGCTCCAAAAACTTGGCCACGTCGAC
TTCGTCAGGAACCTTCATCCCAACATTCAAAACCAATTGGCACACAGCCC
AATTCAAAACTTTATACCATGGAGGGCAGTTTGGAAAGCAAGCTCCGTCA
CAACACCTTGCCGAGTCGTTTTCGACGCATCACAACCAACAAACAACGGC
TACAGTCTTAACTCAATTCTCGCAAAGGGCACCAACGGTATGAATAAACT
TGTTGAAATCCTCATTCGCTGGTACTGTCACAAAGTCGCATTTCATACTG
ACGTAACCGTAAGTATCGATCGACGTATCCGAACTAAACTTCGCCAAGAA
ACGACGAGGAAAGAAACCAGATGAGAAAGTTGGTATCGTTCCATCCACCC
TCACAAGGCGTCATTGCGTATCCAAGGTGCACGAGCTATTCGACATCACT
GGGAAGATCACACCAATCACTGCATCACTCAGGATTGATCTCCACAACAT
CGTACAACGTGGTTTGAAGTGGGACGATGCCATACCGGACAACCTTAGAT
CCATATGGGAATCCAACTTCGAAATGATTCAAGAGATAAAATCAATTCGA
TACGCCAGAACTGCAGAACCATTGTGCCTGATGATGCAGCCAACTTAATG
ATTGAGACCATCGACTTCGGTGATGCAACCAAAGAGATGGCAGCCGTTGC
TATCTATGCCAGAATACTACATTTAAACGGTGAATATTCGTGTCAACTCG
TATTTGCTCGATCAAAGATTTTGTCATCATCAACTCAACCTCGAGCTGAA
CTCGAAGCAGCTGTCCTCAACACTCATACTTCCGAAGTCGTCAAACGTGC
ATTGAAGTCCAAACACAACGGATCAATCAAATTGACAGACAGCACCATCG
TTCTACACTGGATCAGTAATGATGAAATCTCCCTCAAGCCATTCGTTCGA
AATCGAATAATCGAAATCATTCGACACACAACTCATGAAGATTGGCAACA
CATCGACACAAACAACATGCTCGCAGATATTGCAGCTCGTAAAGGTGCAA
CAATAGACGATATCAGCAGCAAATCAACATGGATCAATGGGCACTCCTGG
CTCAGGGGTGACAAATCAACCTTCCCAACCAAAACTGTAAGTCAAATTAA
TTTCAATTCTACTGACTTATGTGAAATCAAGAATGAGGCAATTCAAGGCA
GTCGTGAAGTTTACTTGGCATCAATGAAGATTGTGTCCGAAGTTCGAGAT
CACTATTCATGCTCCAAATATCTGATTGACCCAAATAAGTTTCGTTTTCA
AAAGGTCATCAGAATACTTGCTCAAGCCATTTCTACAACTACTTAGATCT
TTAGTAGCTCTACGTAAACAATCATCTGCACCAACCTACGAATTCAAATC
AAATGGACGACTGACTGACGATCAACTCAAGCAAGCCGAAACGTACTTCT
GGCGCAAGGGTACTGAAGAGGTGAAACAGTTCGTCAGTAAAGAGAAGTAC
AAATGCATATCAACAGAGATTGACGGCATCCTAACGTATACTGGTCGTAT
CATGCCAACAGACGAAATCAACGTGATCACTCCGATGACGAAAGTGATGA
AAGATCTACATCAAACGACCTTCTGCGTTCCAATCATCAGCAAACATTCA
CCCATCGCCTACGCCATCCTGAGTGACGTTCACTGGCACAACAAAGTCGT
CAAACATTCCGGCATCGAAGCTACGTTATGCTATGCATCCCAGAAGGCAT
TCATCATTGAAGGACGCGAAGTTGCAAAGACG

Coding sequence (CDS) from alignment at sc0000240:279141..281122-

>TCONS_00016491 ID=TCONS_00016491|Name=TCONS_00016491|organism=Clytia hemisphaerica|type=CDS|length=1278bp|location=Sequence derived from alignment at sc0000240:279141..281122- (Clytia hemisphaerica)
CTCTACGTAAACAATCATCTGCACCAACCTACGAATTCAAATCAAATGGA
CGACTGAATGGGAATCCAACTTCGAAATGATTCAAGAGATAAAATCAATT
CGATACGCCAGAACTGCAGAACCATTGTGCCTGATGATGCAGCCAACTTA
ATGATTGAGACCATCGACTTCGGTGATGCAACCAAAGAGATGGCAGCCGT
TGCTATCTATGCCAGAATACTACATTTAAACGGTGAATATTCGTGTCAAC
TCGTATTTGCTCGATCAAAGATTTTGTCATCATCAACTCAACCTCGAGCT
GAACTCGAAGCAGCTGTCCTCAACACTCATACTTCCGAAGTCGTCAAACG
TGCATTGAAGTCCAAACACAACGGATCAATCAAATTGACAGACAGCACCA
TCGTTCTACACTGGATCAGTAATGATGAAATCTCCCTCAAGCCATTCGTT
CGAAATCGAATAATCGAAATCATTCGACACACAACTCATGAAGATTGGCA
ACACATCGACACAAACAACATGCTCGCAGATATTGCAGCTCGTAAAGGTG
CAACAATAGACGATATCAGCAGCAAATCAACATGGATCAATGGGCACTCC
TGGCTCAGGGGTGACAAATCAACCTTCCCAACCAAAACTCTCTACGTAAA
CAATCATCTGCACCAACCTACGAATTCAAATCAAATGGACGACTGAATGG
GAATCCAACTTCGAAATGATTCAAGAGATAAAATCAATTCGATACGCCAG
AACTGCAGAACCATTGTGCCTGATGATGCAGCCAACTTAATGATTGAGAC
CATCGACTTCGGTGATGCAACCAAAGAGATGGCAGCCGTTGCTATCTATG
CCAGAATACTACATTTAAACGGTGAATATTCGTGTCAACTCGTATTTGCT
CGATCAAAGATTTTGTCATCATCAACTCAACCTCGAGCTGAACTCGAAGC
AGCTGTCCTCAACACTCATACTTCCGAAGTCGTCAAACGTGCATTGAAGT
CCAAACACAACGGATCAATCAAATTGACAGACAGCACCATCGTTCTACAC
TGGATCAGTAATGATGAAATCTCCCTCAAGCCATTCGTTCGAAATCGAAT
AATCGAAATCATTCGACACACAACTCATGAAGATTGGCAACACATCGACA
CAAACAACATGCTCGCAGATATTGCAGCTCGTAAAGGTGCAACAATAGAC
GATATCAGCAGCAAATCAACATGGATCAATGGGCACTCCTGGCTCAGGGG
TGACAAATCAACCTTCCCAACCAAAACT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009212XLOC_009212Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016491-proteinTCONS_00016491-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016491-exon-sc0000240-1575043694:279787..281122TCONS_00016491-exon-sc0000240-1575043694:279787..281122Clytia hemisphaericaexon
TCONS_00016491-exon-sc0000240-1575043694:279141..279565TCONS_00016491-exon-sc0000240-1575043694:279141..279565Clytia hemisphaericaexon
TCONS_00016491-exon-sc0000240-1510915933:279787..281122TCONS_00016491-exon-sc0000240-1510915933:279787..281122Clytia hemisphaericaexon
TCONS_00016491-exon-sc0000240-1510915933:279141..279565TCONS_00016491-exon-sc0000240-1510915933:279141..279565Clytia hemisphaericaexon
TCONS_00016491-exon-sc0000240-1491911889:279787..281122TCONS_00016491-exon-sc0000240-1491911889:279787..281122Clytia hemisphaericaexon
TCONS_00016491-exon-sc0000240-1491911889:279141..279565TCONS_00016491-exon-sc0000240-1491911889:279141..279565Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000240supercontigsc0000240:279141..281122 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.172787	0	0	0	0	0	0	0	0	0	0	0	0	0.0915914	0	0	0	0.0637141	0.324116	0	0	0	0	0	0	0	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR008042Retrotrans_Pao
IPR012337RNaseH-like_dom
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00016491 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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