TCONS_00016493 (transcript) - C. hemisphaerica

Overview
NameTCONS_00016493
Unique NameTCONS_00016493
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length386

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00016493 ID=TCONS_00016493|Name=TCONS_00016493|organism=Clytia hemisphaerica|type=transcript|length=386bp
ATTGGTGCAGCACACTTATCAACACACTTTGTATCAAACCAACTTCGTCT
TTTTCACAATGGGTATGACGTTAATCCAGACATTCGTTTACTCGGTTATC
TATCACAAATTGGTGACGTCTTCAACAGTAAGAGTAATCATTTTGATGAT
GAACAATCAACAATCAACACCTTCAACGAAGCAGAACGTGCTGGAAGTGA
ACAAACTTTTCGTTGCGTCAGTTGCAGAGGATGTGCCAAATGCAAAAACC
TCACCAACGAGATCATGAGCATCAAAGAAGAAACTGAACAACAATTCATA
GATGATTCCGTCACAGTGGACATACAAAACCACCAGTCAATTGCTACTCT
TCCACTCATGGACAGTCCAAGCAGATTATCTCCAAA
Run BLAST on NCBI

protein sequence of TCONS_00016493-protein

>TCONS_00016493-protein ID=TCONS_00016493-protein|Name=TCONS_00016493-protein|organism=Clytia hemisphaerica|type=polypeptide|length=128bp
IGAAHLSTHFVSNQLRLFHNGYDVNPDIRLLGYLSQIGDVFNSKSNHFDD
EQSTINTFNEAERAGSEQTFRCVSCRGCAKCKNLTNEIMSIKEETEQQFI
DDSVTVDIQNHQSIATLPLMDSPSRLSP
Run BLAST on NCBI

transcript from alignment at sc0000240:456..841

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00016493 ID=TCONS_00016493|Name=TCONS_00016493|organism=Clytia hemisphaerica|type=transcript|length=386bp|location=Sequence derived from alignment at sc0000240:456..841 (Clytia hemisphaerica)
TTTGGAGATAATCTGCTTGGACTGTCCATGAGTGGAAGAGTAGCAATTGA
CTGGTGGTTTTGTATGTCCACTGTGACGGAATCATCTATGAATTGTTGTT
CAGTTTCTTCTTTGATGCTCATGATCTCGTTGGTGAGGTTTTTGCATTTG
GCACATCCTCTGCAACTGACGCAACGAAAAGTTTGTTCACTTCCAGCACG
TTCTGCTTCGTTGAAGGTGTTGATTGTTGATTGTTCATCATCAAAATGAT
TACTCTTACTGTTGAAGACGTCACCAATTTGTGATAGATAACCGAGTAAA
CGAATGTCTGGATTAACGTCATACCCATTGTGAAAAAGACGAAGTTGGTT
TGATACAAAGTGTGTTGATAAGTGTGCTGCACCAAT

Coding sequence (CDS) from alignment at sc0000240:456..841

>TCONS_00016493 ID=TCONS_00016493|Name=TCONS_00016493|organism=Clytia hemisphaerica|type=CDS|length=384bp|location=Sequence derived from alignment at sc0000240:456..841 (Clytia hemisphaerica)
TGGAGATAATCTGCTTGGACTGTCCATGAGTGGAAGAGTAGCAATTGACT
GGTGGTTTTGTATGTCCACTGTGACGGAATCATCTATGAATTGTTGTTCA
GTTTCTTCTTTGATGCTCATGATCTCGTTGGTGAGGTTTTTGCATTTGGC
ACATCCTCTGCAACTGACGCAACGAAAAGTTTGTTCACTTCCAGCACGTT
CTGCTTCGTTGAAGGTGTTGATTGTTGATTGTTCATCATCAAAATGATTA
CTCTTACTGTTGAAGACGTCACCAATTTGTGATAGATAACCGAGTAAACG
AATGTCTGGATTAACGTCATACCCATTGTGAAAAAGACGAAGTTGGTTTG
ATACAAAGTGTGTTGATAAGTGTGCTGCACCAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009214XLOC_009214Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016493-exon-sc0000240-1491911889:456..841TCONS_00016493-exon-sc0000240-1491911889:456..841Clytia hemisphaericaexon
TCONS_00016493-exon-sc0000240-1510915933:456..841TCONS_00016493-exon-sc0000240-1510915933:456..841Clytia hemisphaericaexon
TCONS_00016493-exon-sc0000240-1575043694:456..841TCONS_00016493-exon-sc0000240-1575043694:456..841Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016493-proteinTCONS_00016493-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000240supercontigsc0000240:456..841 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.60571	0.781839	2.49642	2.44236	3.78425	1.28158	0.773089	2.89503	0.337813	1.04609	0.609215	0.266983	0.533223	1.38439	0.682896	0.366426	0.150469	0.771129	1.91764	2.00667	0.581388	1.13432	0.689459	0.208939	2.79764	2.1127	0.274842	0	0.444944	0.226664
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00016493 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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