TCONS_00016507 (transcript) - C. hemisphaerica

Overview
NameTCONS_00016507
Unique NameTCONS_00016507
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length381

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00016507 ID=TCONS_00016507|Name=TCONS_00016507|organism=Clytia hemisphaerica|type=transcript|length=381bp
CATGCCCTCAAGGAAAATTCCAAATCCATTGCTGTTCTCCGATCACCTTC
TTCAGATACTGATATCTTCATTCTCGCCGCATGTCTTTTAAATCCTTCAA
AAATTTACCTTGATTATGGTAAAGGTAAACAACGAAAGGGATTTTGGTTG
AATAAGCTTGGTAAAGATGTTGAAAAGTATCGTACTTTCCTCATTGGTTT
CCATGCCTTCACTGGGAACGACTAtgtatcttcattttttaagaaaGGGA
AATCAACCTgctggaaaaaaatgaagaagaatcgAAATTTTGTTGAAGCT
TTCAAGGTGTTGGGAACAGGATGGGATGTCGATGATGCTACAATCACAAC
CTTGGAGCATTTCGTTTGTGCACTGTATGGC
Run BLAST on NCBI

protein sequence of TCONS_00016507-protein

>TCONS_00016507-protein ID=TCONS_00016507-protein|Name=TCONS_00016507-protein|organism=Clytia hemisphaerica|type=polypeptide|length=127bp
HALKENSKSIAVLRSPSSDTDIFILAACLLNPSKIYLDYGKGKQRKGFWL
NKLGKDVEKYRTFLIGFHAFTGNDYVSSFFKKGKSTCWKKMKKNRNFVEA
FKVLGTGWDVDDATITTLEHFVCALYG
Run BLAST on NCBI

transcript from alignment at sc0000240:382716..383096

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00016507 ID=TCONS_00016507|Name=TCONS_00016507|organism=Clytia hemisphaerica|type=transcript|length=381bp|location=Sequence derived from alignment at sc0000240:382716..383096 (Clytia hemisphaerica)
GCCATACAGTGCACAAACGAAATGCTCCAAGGTTGTGATTGTAGCATCAT
CGACATCCCATCCTGTTCCCAACACCTTGAAAGCTTCAACAAAATTTcga
ttcttcttcatttttttccagcAGGTTGATTTCCCtttcttaaaaaatga
agatacaTAGTCGTTCCCAGTGAAGGCATGGAAACCAATGAGGAAAGTAC
GATACTTTTCAACATCTTTACCAAGCTTATTCAACCAAAATCCCTTTCGT
TGTTTACCTTTACCATAATCAAGGTAAATTTTTGAAGGATTTAAAAGACA
TGCGGCGAGAATGAAGATATCAGTATCTGAAGAAGGTGATCGGAGAACAG
CAATGGATTTGGAATTTTCCTTGAGGGCATG

Coding sequence (CDS) from alignment at sc0000240:382716..383096

>TCONS_00016507 ID=TCONS_00016507|Name=TCONS_00016507|organism=Clytia hemisphaerica|type=CDS|length=381bp|location=Sequence derived from alignment at sc0000240:382716..383096 (Clytia hemisphaerica)
GCCATACAGTGCACAAACGAAATGCTCCAAGGTTGTGATTGTAGCATCAT
CGACATCCCATCCTGTTCCCAACACCTTGAAAGCTTCAACAAAATTTcga
ttcttcttcatttttttccagcAGGTTGATTTCCCtttcttaaaaaatga
agatacaTAGTCGTTCCCAGTGAAGGCATGGAAACCAATGAGGAAAGTAC
GATACTTTTCAACATCTTTACCAAGCTTATTCAACCAAAATCCCTTTCGT
TGTTTACCTTTACCATAATCAAGGTAAATTTTTGAAGGATTTAAAAGACA
TGCGGCGAGAATGAAGATATCAGTATCTGAAGAAGGTGATCGGAGAACAG
CAATGGATTTGGAATTTTCCTTGAGGGCATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009228XLOC_009228Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016507-exon-sc0000240-1491911889:382716..383096TCONS_00016507-exon-sc0000240-1491911889:382716..383096Clytia hemisphaericaexon
TCONS_00016507-exon-sc0000240-1510915933:382716..383096TCONS_00016507-exon-sc0000240-1510915933:382716..383096Clytia hemisphaericaexon
TCONS_00016507-exon-sc0000240-1575043694:382716..383096TCONS_00016507-exon-sc0000240-1575043694:382716..383096Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016507-proteinTCONS_00016507-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000240supercontigsc0000240:382716..383096 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.825064	0	0.96054	0.560015	0.556322	0.219807	1.12809	2.97918	1.46542	2.25637	1.04488	1.86201	0	0.569855	0	0.125693	0.154843	0.158709	0.219265	1.14723	0	0.291824	0	0	0.221459	0	0.282832	0	0.408759	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00016507 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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