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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00016511 ID=TCONS_00016511|Name=TCONS_00016511|organism=Clytia hemisphaerica|type=transcript|length=2421bpRun BLAST on NCBI protein sequence of TCONS_00016511-protein >TCONS_00016511-protein ID=TCONS_00016511-protein|Name=TCONS_00016511-protein|organism=Clytia hemisphaerica|type=polypeptide|length=562bp MADPDADTEEEYENSPDYYSILNVRKDATEGEIKNAYRRMCVMYHPDKHSRun BLAST on NCBI transcript from alignment at sc0000241:4137..21506+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00016511 ID=TCONS_00016511|Name=TCONS_00016511|organism=Clytia hemisphaerica|type=transcript|length=17370bp|location=Sequence derived from alignment at sc0000241:4137..21506+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000241:4137..21506+ >TCONS_00016511 ID=TCONS_00016511|Name=TCONS_00016511|organism=Clytia hemisphaerica|type=CDS|length=33780bp|location=Sequence derived from alignment at sc0000241:4137..21506+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00016511 vs. Swiss-Prot (Human)
Match: DJC11 (DnaJ homolog subfamily C member 11 OS=Homo sapiens GN=DNAJC11 PE=1 SV=2) HSP 1 Score: 533.872 bits (1374), Expect = 2.055e-180 Identity = 277/559 (49.55%), Postives = 392/559 (70.13%), Query Frame = 2
Query: 119 ADTEEEYENSPDYYSILNVRKDATEGEIKNAYRRMCVMYHPDKHSDQKHKEIAEGNFSRIHKAYEVLSTPETRTIYDLYGQKGLDA-GWEVVERKRTAQEIREEYERLQKDAEERRIQQKTNPKGSFTMQINATDLFSKEESDDPYYQDEESLLPNIEIRGMSVNQSIEAPLTTKNTAIITGTMSHSNGNGVGSVNVAMRRLISHKTWAEGEVGVGN--GPTFRCKAFRNLGKKMFGTVSINSNLQQHKLSAGLQAMVARQLTPNTMGYLSWSAGSPSYMTSTIARNTENYSMMAQLQLGKPHSLAMMTYTHKFGPDTKTKV--ALKFGVMGLVFDYGCEHKITSFSRLGAFMSVGQITGVTLKIKLHRHTQTFNFPIMLAETFSPTAVFYGTIAPVLVFFTVKALLIAPMLKEQREQKIKETREKNAKLIAEKRKEAEAIIQVMLPQYQRSVDTEQEKHGLVILEAWYGRFVPDSNRMTDKSLLGVFDVTVPVQCLVKDSKLLATDATKSQLSGFYDPCIGEDKVLKIKYEFRDALHEVTYKDDEAVRIPKQSHRISS 1780
A +EEE +N DYYS+LNVR++A+ E+K AYRR+C++YHPDKH D + K AE F+ +H+AYEVLS P+TR IYD+YG++GL+ GWEVVER+RT EIREE+ERLQ++ EERR+QQ+TNPKG+ ++ ++ATDLF + D+ Y S P IEI M ++QSIEAPLT +TAI++G++S NGNG GS+N A+RR+ S K W E E G G+ GP F K FRNL + F T + + GL ++AR L NT+GYL W G S M ++I R+T+ LQLG PHS A+++Y HKF D +T+V +LK G G V +YG E KI+ S LGA +SVG GV+LK+KL+R +QT+ FPI L + P+A+FY T+ P++V+F + L+I P L+ Q+E+++++ RE A + +K++EAE+ +++M +R ++ E+ + GL+I+ AWYG+FV D +R ++K + V DVTVP+QCLVKDSKL+ T+A+K+ L GFYDPC+GE+K LK+ Y+FR LH+V D EA+RIPKQSHRI +
Sbjct: 4 ALSEEELDNE-DYYSLLNVRREASSEELKAAYRRLCMLYHPDKHRDPELKSQAERLFNLVHQAYEVLSDPQTRAIYDIYGKRGLEMEGWEVVERRRTPAEIREEFERLQREREERRLQQRTNPKGTISVGVDATDLFDR--YDEEYEDVSGSSFPQIEINKMHISQSIEAPLTATDTAILSGSLSTQNGNGGGSINFALRRVTSAKGWGELEFGAGDLQGPLFGLKLFRNLTPRCFVTTNCALQFSSRGIRPGLTTVLARNLDKNTVGYLQWRWGIQSAMNTSIVRDTKTSHFTVALQLGIPHSFALISYQHKFQDDDQTRVKGSLKAGFFGTVVEYGAERKISRHSVLGAAVSVGVPQGVSLKVKLNRASQTYFFPIHLTDQLLPSAMFYATVGPLVVYFAMHRLIIKPYLRAQKEKELEKQRESAATDVLQKKQEAESAVRLMQESVRRIIEAEESRMGLIIVNAWYGKFVNDKSRKSEK--VKVIDVTVPLQCLVKDSKLILTEASKAGLPGFYDPCVGEEKNLKVLYQFRGVLHQVMVLDSEALRIPKQSHRIDT 557 The following BLAST results are available for this feature:
BLAST of TCONS_00016511 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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