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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00016517 ID=TCONS_00016517|Name=TCONS_00016517|organism=Clytia hemisphaerica|type=transcript|length=2472bpRun BLAST on NCBI protein sequence of TCONS_00016517-protein >TCONS_00016517-protein ID=TCONS_00016517-protein|Name=TCONS_00016517-protein|organism=Clytia hemisphaerica|type=polypeptide|length=625bp MKRWSLLFWIFCQIQGAFQTPVSRPRSITIESSQSTLNSISRIQLIRSTSRun BLAST on NCBI transcript from alignment at sc0000241:66181..72242+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00016517 ID=TCONS_00016517|Name=TCONS_00016517|organism=Clytia hemisphaerica|type=transcript|length=6062bp|location=Sequence derived from alignment at sc0000241:66181..72242+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000241:66181..72242+ >TCONS_00016517 ID=TCONS_00016517|Name=TCONS_00016517|organism=Clytia hemisphaerica|type=CDS|length=18780bp|location=Sequence derived from alignment at sc0000241:66181..72242+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00016517 vs. Swiss-Prot (Human)
Match: MUSK (Muscle, skeletal receptor tyrosine-protein kinase OS=Homo sapiens GN=MUSK PE=1 SV=1) HSP 1 Score: 260.766 bits (665), Expect = 6.947e-74 Identity = 133/303 (43.89%), Postives = 189/303 (62.38%), Query Frame = 3
Query: 1071 FSKENLVFDRNLGEGAFGKVVKCRTKSIDHPKLGTVE---MVAVKYLKENAEAEMELTFQRELEILSNFDHPNVIPLVGVCLDKSGPMCLILEFMKYGDLNQYIRLRSGSFHAVAG-SCGDLPDGVEFQSP---ELSYHNLLSITSQIADGVSYLASKRFVHRDIATRNILVGENLKVKISDFGLAHDIYGSDYYRVSSQKLLPLRWLSPEALSLGKFTVYSDTFAFGVTMWEIFTYGMQPYYGLNNEEVCNMIRGHKLLERPYCCPPNIYALMKSCWKFEPRHRKDLVFIRDTIDSWLEADE 1958
+ + N+ + R++GEGAFG+V + R P L E MVAVK LKE A A+M+ FQRE +++ FD+PN++ L+GVC PMCL+ E+M YGDLN++ LRS S H V S DL + SP LS L I Q+A G++YL+ ++FVHRD+ATRN LVGEN+ VKI+DFGL+ +IY +DYY+ + +P+RW+ PE++ ++T SD +A+GV +WEIF+YG+QPYYG+ +EEV +R +L P CP +Y LM+ CW P R I ++ E E
Sbjct: 570 YPRNNIEYVRDIGEGAFGRVFQARA-----PGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFDNPNIVKLLGVC-AVGKPMCLLFEYMAYGDLNEF--LRSMSPHTVCSLSHSDLSMRAQVSSPGPPPLSCAEQLCIARQVAAGMAYLSERKFVHRDLATRNCLVGENMVVKIADFGLSRNIYSADYYKANENDAIPIRWMPPESIFYNRYTTESDVWAYGVVLWEIFSYGLQPYYGMAHEEVIYYVRDGNILSCPENCPVELYNLMRLCWSKLPADRPSFTSIHRILERMCERAE 864 The following BLAST results are available for this feature:
BLAST of TCONS_00016517 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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