TCONS_00016539 (transcript) - C. hemisphaerica

Overview
NameTCONS_00016539
Unique NameTCONS_00016539
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1918

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00016539 ID=TCONS_00016539|Name=TCONS_00016539|organism=Clytia hemisphaerica|type=transcript|length=1918bp
CGAAATGGAGAGGAGCAActtgaaatgaaaatgtttcatGTATTAGaaaa
aattaaagtcCTTTTGAAAATGAACAATTATTACCATGCAAGTGGAtaca
acaaaaatatttgagGTTGAACGCATAGTTTGCCATCGAGCTCACAAAGG
GAAAGAAGAATTTTTAGTGTATTGGAAAGGATTTGAAAATCCTACTTGGG
AACCAGTGGAAAATCTTCTTTCTTGTGGAGACCTGATTGAACAATTTCAT
AGACAGGCCAAGCCCATACCAGGTGCCAATCCACATCAGCTTATACGAAC
AGCTAAAGCAAAGACAGTCCATGTTAAAATGTTATTGACACGCAAGAATA
AACACAAACGTAAACTGACACCATCCTTGTCTGAACCAGATACTAATGAT
AAATCAATTACACCTCCATTCAAAAGAAAAGGATTAAGTGAAAGTGAAAA
ACTAATCCGAGATACACTTCTACACGAATCAAAGACAATGAAGCCTGAAA
ATACTTGTCTGAATAAGATAAATGGACTTTTTGATTGTTATGATAATAAC
CTCAATAATAATGATATAAAACCAATGGACAATAATgtaccaaataaaaa
attgaatggGCGTAGGACAGTTTCAGATAGTTATTATAGAGGGAGGAACG
AACCATCAAAATTGGTATTATGTGAAATAGATAAAGGTTATATGACGATC
ACTTTGAATAATGCCAGGAgacacaatatattgacaacTGATATGCTGGA
TGCAATCAGAAATCATATGataaaagcaaagaaaaatgatACCATCAAGG
CAGTTCTTTTTTGTAGTAGTGGAGATTATTTTTGCTCTGGTATTGACTAC
AGTGAATTCGTGGAGTGCTCTGATGACAAAACTTATAAAATACTTGTCAA
CGATCTGATATCTTGTTTAAGGAATTTCTTTACAACCTGGTTCAGCTTCA
CAAAGCCTATTGTATGTGCTGTCAATGGGCCAGCTTTCGAATTCGGAGCG
AGTCTGGTGGTTGGATCAGATTTCTCTTACTCTTCTGCCAaggCATCGTT
TGACTTGATGTTCAACAAACTAGATTTGACGCCGATTGGATGTGTGACAC
ATCTCCTTCCCAAGATAGTGGGTAGAGGGCTTGCCCATTCAATGATGTAT
TTAGGAGGTCACTATTCTGCAGCAACCAGCTTTGATCGTGGTTTGGTACT
GGACATGTATGGTGTCAATTCTTTCAGTGAAGATATCGAAAAACGAATGT
TACAACTGGCTACAAACTCGACCCATTGTTTACAAGCGACGAAGCGAATT
GTTCAATTCCTACAAGACGATACTATTGAAGATATCTACAGTGAAGAATT
GAAATTGTATCAGCAATCTCTTTTGTCCAAAGAAACGAGAAAGAAGATGA
AAGATGATTGGGCGATGAGGATCAATCTCTACTCTGATATCTAGAGAAGT
GGACGATTGGTAGGATGGTATTGGATCAGATGTCAGTGGCCAATGGTTTG
ACATTGTTTGTTCCAATAGCTAGATGAGACTTAAAGGGACGATTTATTGC
TTCATGGAGAACAAGCTACAGTACAGGTTTTTCTCAACGCGATGGAATAC
GCTTAACGCAATATTGTGAATTTGAGCCGTTATATTCTATCTAGGAGTGg
atgatagaccttttcataaattacgttacgaacatcacttgcctcttttt
gaaaatatcgccatggtgattaactcccagcggactTTAATAAAACTACt
ttatattcataaaaaaaatcatttaatccctcaggggggggggtaccaag
tcagtgtactggaccatagggtactaacttgatttttggatttttttcca
aaaaattagaccaccaccctttttagtacactgtactaactttttttcac
ggtcggggctttgacacc
Run BLAST on NCBI

transcript from alignment at sc0000241:323123..338796+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00016539 ID=TCONS_00016539|Name=TCONS_00016539|organism=Clytia hemisphaerica|type=transcript|length=15674bp|location=Sequence derived from alignment at sc0000241:323123..338796+ (Clytia hemisphaerica)
CGAAATGGAGAGGAGCAActtgaaatgaaaatgtttcatGTATTAGGTAa
attacatctttacaattatCTTTCTGTCTAAAATTTTGGAAtgtcttttc
tatttttatcacTTAAAGGTTAGGTATGTAACACTGTTTCTTCCTCTAAT
CAAAAAAATggttggggggggggtcggttGCGTTTTGCGGCGTTGTAGGG
TTCTGACCAGTATGGAGTTAATggtactgtcaactgctctaacttgggac
aattggttGAAACTTGGGACtattgcatatctggtctgtattttcacctG
CTGtaaaaaatcgaaagagaaatcgtgtatatTTTAATACGccattcatt
aactcaaataaAATGACTCTGGAGGTTAGGAATTGCCGTCcaatgttttg
tcagatagtcccaagttagagcagttgatttGATGGTAGTTAACATCAAA
GGCATGAAATTCAACTTTCAAACAAACTTAGGCGTCATAATTacgtttgc
gtgttttgaaagtttgatgtttgTACTCTGTCTTGCcttggtggaatttt
ttaatggcatgaaaacagaatatgctatgtctttaggaacaaatttctaa
aaggcttattgttgttctgtaaatgtttctttttggattaagaaatttca
tcttttattgttctaatgatttaTAATATTTCTCTATGAAGATGCTTTGT
CAGTCAGGAACAATGTCTTAGTTAGGACAATGGCCTGACTAGGACAATGG
CCTAGGAAGGACATTATTTTATGTCCTAATTAGGCCATAGATGGACTAAG
TaggacattttttatttgaacccCTATTTTAGACATTTTACAGGAAAATG
CGCATGTTAATAACATACCTAACCTATCGAAAGAGCAACATTTAGTCGGT
AtatgttgaaaatttcttcaaaatctgCGGAAGGGTTTTTTCTCTATGTG
TCTTTGAACGTACAATCTGTAAAACAGGCTTTAGGGCTAGGATAAGATAT
TTGATCcctttgaccaaaatatttgaaaatcacCTAGAACCTTTATTTTT
TGGTGCTCTTTCGATTGGCGATGGTAAGAAAGTGcgcatttttcttgatt
ttgagtTATaggcaaaaatagaaaaatggcCTAGTAAGgacattttttat
ttagaaCATATGTCCAAATTAAGACATGATGTCTTAAGTAAGACATTGTT
CCTGACtgatattttccaactaaatccaaccacagctttttcgttgctgt
atttttgcatacaattcaagatggcggatggaaaggcgaaatgAGGTcta
ttgattttaattttgagGATGTCAAGTcctattttttcaagaaaatcata
CCTTGAACAACAAATGAATCCCCAACAAGTGTGTGAAGAACGTGTGTATA
ATACGCGCCTTTGTGTGCCCTACTCTTAGGGGTTAGGAATATGTTCAACA
AAGGAGTAACCTCCACACCtgccgtcaactgctctaacttgggactatct
gacaaaacatgggatagccattcggccaccatttcaccaaacctccaaat
tCATTTAATTAACATACTGCGGATAATAGATAGCAATGTGGATATGCTAC
CCTCACCAGGTAGGTGCTGACTCTTTTGTACGGGTGAAAGTAGATATTTT
GTTATTCAATCCGTACGGGTGAAAATTGTTTATATTGATTAGGGTCAGGA
TCAATTAGGGTCAGGGGGTTGGAGTTCAAGAGTCTAGGGTTGGGAGTGGC
ATTTGTAGGTAACTATAGGGCTCTAGGCCCTGGTAAGGCTACCCTTATGG
TTGGGGCTAACCCTGGTATGTCAATATATataggtctgtaaaataccgtc
aactgctccaacatgggacggccattccaccaccatttcaccgaacctcc
aatcCAAAGTcgtttgatttgagtttaatgaaccacatatttaaaaatac
acaatttctctttcgcaccgagtaggcttttaaatcgaaatattaCCTAT
TATCTATTACCTTTACGCGGGGGTGGTTTTTATGCGCTACCTCAAGGGAA
TaaatttttgcggggattaGTAGCTCTTTTCTCCACTTACATCAAGTACC
CGGCTCTTGCTGACATATTTTCATCTCATCGCACGGCTGTTAGATAAAAG
CCCGAGGGAGCAAGACATTAAAAGAGATGTCGTGAAATGgtttattttaa
ttacttttgtCAGATGCAGCTTTTCTAGACATATCTATTTTTGTGATATA
TATGAATAACAGNCAGATGCAGCTTTTCTAGACATATATATCTATTTTTG
TGATATATATGAATAACAGAAGAAGTGTGATTGACAAACTTGgtggaagt
atcaaaacaaatatgttGTCAAagtgatttaacagtaagtaaaaatccag
gccagatatcaataagtcccatgttgcgaccACTCGTCTCAAGTTTGAGC
TGGTCTAGCAGTAGCATACGGAGCTTCTGAACCGAAGGTACTTTTCATGT
GTGGGTTCGAATTTGTGAATGACGGCTTTCTGTCGTGTCCTATTGGCGca
agcggttaggcattggtttgaaaaccaaggttgcttgcatttggtgatTC
GAGCCGGGCTCGGAGACCTATTTCACCGatacgggcaaatttcagaaaaa
tacttagaaaacagttagaaacacttgaaaAAGTGGTCAAGATCGGTTTC
AAGATGTGTGAGTgtgattaaattgttaattacttcttcaaattatgtac
ttttgaaatgctttaaaaatacatttggttgtgattatgagatggtgaaa
gtttgattgataatcTTGGTTGAAGTAttaaaacaaacttgttgtcaaag
agatttaaacagTAAGTGTAGTAATACTGCCCGGAAATCAACAGTTCCAA
GATTtgaccaattgtcccaagttagagcagttgaggGTGCCCGACGATGC
ACCCTCTTAATCGGGCTCTGCATTTGTGACGCCTTACCTGCCTATGCCCG
GACACCAGTAGCCACtccaaaataaaatataaagcttattttgagcaatt
tcagGCGTGGGAAGAACAAATATCCCTGGACCCTGCATTTTCTTGCTGTT
TTTGGTGTAGACATCAGTTGAAACAAATAACAGAATGACAATTTGGTGTG
GACTTTGCATCGTTCCCACACTGGCTGACTGATACCATTCAACCAGCATA
AATAGTGGCATAATTATTGCATAATCCATAGCTTCAGCCCCCTTACTTTT
gggggctaagaaatattttggccttcaaagaacctgggggctaaaattac
caaaatatttggggggacctagattgttggggggggggggctagaaGATC
TGACTGGGACTCTGGgggggctgttcagctaatttcaaaagatctttatc
ttactattaaaatgaaatataaaaagcaaaagatttgtaaacattaaatA
TTAATACatgtaaaatttagttttcatttatcagtacttTACTCTCATAT
ATTTTTGATGATGGGAGAACAAtgttaggggacctagcacaaggcaattt
tttggggggttAAATTGTTgggggggaccttactttgttgggggaGTTAG
AAACCTGACTGAAGCTATGATAATCCCTTCACAGTATCATGGCTTATACC
AATAATTTGCTTTGTAGCGTTATCTTTCAAATGGTCAACAGGCAGTGAtg
tcaagtttgaaattattttgtattagaaaaataattataaaagcagtcaa
aacgcagTTTACCTTACTTCCTGATTTTGTCTTTGTgatgctaaaatata
acaaacctttgtcatgctgtctaattacaaaaacctccaatcacttCTTC
TCCGCCgtcttgtttcactttaaatgcctttttttttaattccttagcta
cattacatgtacggaaaaggtttcctccaggttttttcaatcccgaGATT
AAACTTCGAGGCTGTTCTGcccgcttatttttctttcaacgtTGAGCCCC
tgggatacttaacaataaaagagattttaagattttaatgttgaaatgtg
tattttttcaataaattctttctgttctaatatatacaaatcacgtcgaa
aaaagtaaaaaagtaaaatacatTTCCacctttactttcactttcttttc
gTGTTACAGGAATCTGTACACCGCttgctaacaaattctgattggctgta
agtttTTAGATTCTGATTGGATTATTTGCCATGCCACAGCTgaattttga
ttgattgaaagtTTTTGAGCGTGAATTCTAATTGGATGAAtgcctgaaaa
gtaaacaacagtaagtaagtattttgcttatcaaaacctaaagatttcca
gggggttttatttactttgtatgaCGATAATTAATAAGCCTACAAAGCAC
TGAGAtaaaaacccaacatagaacaggtgtattttgtaatgtagaatatg
atagtgtgaatctttttgaaattctatgttaggattttttctcaatgccc
tgtaactatgcccggggtacccgttgctaagaccttgTGTTAAAAACAAA
CCGATTTTAAGGCAAAAATTCctcaaaaattgagatttttgtaatacctc
aaatattgacTGTACTGTTAGGGGGATCAGTACAAGAGAATCTCTTTTAA
CAAAGTTCATTTCATTGAAGTTACCTGTTTATTATATACCCTTTCAATGA
TGTTGTAACGGAGCTGATTCAAGTCACAGAAAAGTAAATTTGCAAACTTT
TGAGTTTAAGTCAGGTTATAAAGATGTAATTTTCTGTTCTGTTGGCTTAA
AAATCAAATCTCATTATCCCTCTACAATCCAAGGAGCTTGTCATGCGTAA
GCAGCACTCTACTTTTAGGGTGCAACATTGGGTAAAGGTTTGTGGGTTTA
TTCTATCAGTTATAATTTTAGTACCttctattttttaagaaaaacccttt
tcctggaaagattttttttatttttccttttttcaatttttgttgaaTGG
GTGAAGCAAACTTGATGTgtgatagctaaaaacataaTTTAGGTTTTTCT
CTTtccaataataaaaatttcagatttatttacaacataagttttctaaa
aaaaaacaaccaaactaTCACCCAAACTATCACCCTTTTATTAAATACCT
TGTagtgtttttttcttgaaacatGGTCAAAGCCTGCTATAAGCCAATTG
TCTTCATGATTCatgatttctatttctattatttgattAGCAAAAACTTT
ATACAAAGTTATTCTCgccaatgtaacaaaaaatatgattaataaaatga
aaaatattaagaatgNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTG
GTGTAAAAGAGTTTGCGTATATCTTTATCCTGCTTTGGATAGGGTTAAAC
TTTGTATTAGCACATCTTTGCTTTATTGGTATCATTTCTCTATTTACCTG
TTATGTTGAATGATATATTTCGTGTAGCATTTTTACCCGAGCTCTGCATC
TACGTTCGTCTAGAGTTTCAAGGTCAGCTTTTCTTCTTTACATTGTTGGG
CTTACAGTCTGTTGCCACGAGCTGTAGATCCAGCGCAAACTCTTTCTCTG
AACCATTTCAATTTTAGCTTTTAAAGTTTCATTTCCAGCTGGGTCCCAAA
CAGTTGATGCATACTCTAATGTTGGTcttatgaagattttaaagcattta
agcCGCATTTCTGGGTTACTCTTGACAAGATTTCTGGTATTGAACCAGTA
TTGTTTGCTTTTGCACAGATATTTGATACATGTGTATTCCACAACAGGCC
TTTTTGCAATGTCACACCAAGGTATTTCGCTTTATCAACTTTCTCAATCT
CTTTTCCATGGATTTGATAATCAGCGTTGATGATCTTACGTTTGTTTGTT
ATCCTCAGCAGCTAGCAGCACTTTTCTGGATGAAATTCCATTGACCATTT
TTGCTCCCAAAGAACGAGtttatttaaatcattttgCAGTTGTTTTGCGT
CTTTGGATGACATTATTTTCCGGTACAGGTAAGAATCGTCAGCGAATAAA
GCAAGTTTTGAATTCGTTTCTAATGGCATATCATTGATATAGGCGAGAAA
CAGGAGGGGGCCGAGAACGGTACCTTGGGGACACCTGAAATGACTGCTGA
ATGTTTAGATGAAGTACCTCGAACAACGTCACATTGAGTTCTATCATGGA
GAAAGTCTGATATCCAGTTTAGAATGTCACCGTTTATACcgtaatgtttc
aatttcagtaTGAGTTTCCTATCACTAAAATATGTttacttttcagaaaa
aattaaagtcCTTTTGAAAATGAACAATTATTACCATGCAAGTGGAtaca
acaaaaatatttgaggTCAGTATCTTTTTTGTTTAGttcttgttacaagt
tttgaataatattttGTTGTTGTCTTGTTATACTGGTCAATAAACCAAAT
TCAAAAATCATTCACGTTGATCCCACCAaagctttatttttgttttttct
taaacatAGAACTTTTCTTCCCATCATCAGTAAAATATTCATAGATAAaa
acaaattcataaaactGATAAATCTGCTCACaatttaaaatcagtacttt
aaGTGTGTCAATTCTTGAGTAAAGATTTAAGGAAATAACCTCCTCAGCTT
TTCAATTATGTTTCAAGGTTGAACGCATAGTTTGCCATCGAGCTCACAAA
GGGAAAGAAGAATTTTTAGTGTATTGGAAAGGATTTGAAAATCCTACTTG
GGAACCAGTGGAAAATCTTCTTTCTTGTGGAGACCTGATTGAACAATTTC
ATAGACAGGCCAAGCCCATACCAGGTAAGCAATGTTATTAGAATGAGAGC
CAGTTATTCTGCCTTGGGGAGAGAGGATGAATTTAAATGTTTGAAATCTC
AAAATatatgacattttttaaaattatctttaaGGTGCCAATCCACATCA
GCTTATACGAACAGCTAAAGCAAAGACAGTCCATGTTAAAATGTTATTGA
CACGCAAGAATAAACACAAACGTAAACTGACACCATCCTTGTCTGAACCA
GATACTAATGATAAATCAATTACACCTCCATTCAAAAGAAAAGGATTAAG
TGAAAGTGAAAAACTAATCCGAGATACACTTCTACACGAATCAAAGACAA
TGAAGCCTGAAAATACTTGTCTGAATAAGATAAATGGACTTTTTGATTGT
TATGATAATAACCTCAATAATAATGATATAAAACCAATGGACAATAATgt
accaaataaaaaattgaatggGCGTAGGACAGTTTCAGATAGTTATTATA
GAGGGAGGAACGAACCATCAAAATTGGTATTATGTGAAATAGATAAAGGT
TATATGACGATCACTTTGAATAATGCCAGGAgacacaatatattgacaac
TGATGTGAGTATACAAAAAGTTTGAGCCAACAAGTTACCAAATGCTTTAT
TTTATTCAGCAAATAGATGGAAGGTATTATTGCTTAAGGAAAATAAATAC
AAACTACTATTTTTTCGGCCCCATACATTTCCTCCCGCTTTCAATTTCAT
ACTGATTTGAAATCACAATAGAATAATAATGGTATCCTCgcactcttttt
tttaaattgtttttccaTTAGATTTAAATATGCTTCTGGGATTTAAAATC
AGAACTACAAAAATATTCCAGAAATTATAAGATGTGACACTATTTAAGCC
ATGATCTTTTGCAATTTTGTTGTTTCAGATGCTGGATGCAATCAGAAATC
ATATGataaaagcaaagaaaaatgatACCATCAAGGCAGTTCTTTTTTGT
AGTAGTGGAGATTATTTTTGCTCTGGTATTGACTACAGTGAATTCGTGGA
GTGCTCTGATGACAAAACTTATAAAATACTTGTCAACGATCTGATATCTT
GTTTAAGGTAAagtaaaactttttcaatgtctttgttgtttgttcTGCTC
TCTTACCAAACTAAGTAGCATATTCTACTACCTTTAGTAACTCTCCAAAG
GAAATTTTCAGTACTCTAGGGAAGAAACTTTTTCTGaatggaaatttttg
cttttcgTGACGATTAACTTTCATGGATTGTGCTCTTCAGAATATGGGAA
GAAACGCAATTTGTCAAAATATCTCTTTCAACTCTGTTTTTATCCCAGAT
AATTATACCAAAATAGAACTATTTTCAACCTAAAATGTTTCCTGAAAtaa
ctttaatttaaaatttttatattggagggtaaaatttaaggaaaactAGG
CTTCTacgagatgaaaaatcttaTTGACTTTCTTATTTCTTATTGACTTA
CATCTGTCATCAAAATAAGCAATAAAAACACCTTGTGAAgcagatattta
attttcagagcctaaattttgtcaaaataaaagaGGAAGATTAGCATGAT
GACTGAAAGACTAGTTCTTGTTCTTTTCTAGGAATTTCTTTACAACCTGG
TTCAGCTTCACAAAGCCTATTGTATGTGCTGTCAATGGGCCAGCTTTCGA
ATTCGGAGCGAGTCTGGTGGTTGGATCAGATTTCTCTTACTCTTCTGCCA
aggtatgttttattttatatttttaaaaatatgtattattaaaaacctaa
aaatctTAGTAATATTTAAGGAGACACCAGCAAGATGAATACTTTAGAAG
TATCTTTTAGAATTTAATTAATATAACTATAATGATATTATGATATGATA
AAAAGGATTAGTTTAACTGAGGATATTTTGTGTATTTCCATAAGAAAACT
ATTTATGTTTTCAAAGCAAAGTAATTTTTGCCAAGAAAGAATTAATGAAT
GTATTTCTAAATGAAGTTTTAAGCCTTTGTAAAGTGCATTTTCCAAGAAA
Cagatttatatttttcaaggaactgtcttttattttcaagcgaaatgttt
tttttcaaagaaattatctTGTATTTTTAATGGGAAATGACTCGTATTTT
CCAAGGACTATATCCTgtgtttctcaaaaaaaatatcttgtattttctga
ggaaaatatcTTGCCTTTCTCAAGGATTATATTTTTAACGAAGATTTTCA
ACAAAGATAttctgtatttctcaaggaaaatgtcatgtatttttcaaata
aaatatttctcaagaaaatatccgtgtttcttaaaaaaatgtcaatgaaa
aaaaatttttttttcgttgaaGAGACGCAGAATATTTCTTAAGGAAAATG
TCTTGTATTTGTCAAGGAAATTATCTTctgtttcttaagaaaaatgtctt
gtatttgtcaaggaaaatattttgtgtTTCTAAAGAAAAATGTCTTGTAT
TTGTCAAGGAAAAATGtcttgtatttctcaaggaaaatatCTTATGTTTC
TCAAGAAAAATGTCTTGTCTTTTCCATGGAAAATATCTTGAGATTTGCAA
GGAAAATgtcttatatttttcaagtagAGTATCCTGTGTTTCTCAAGAGA
AATGTCTtgtatttttcatggaaaatatcCTGCTTTTGCAAGGAAAATGT
CTTGTATTTCTCAACcacaatacatgttttttcttttataagcataacgt
ttataagcatatgcaggctcagtttttggtacctaaacaatggctctatt
gtttgagaacaatagaatgctaagcataatgcgagcttgatgtaggggca
gacacttgcttataaaaagaaaaacatgtattctgtgtttctcaaagaaa
atttcttgtatttttcaagtAAAATGTCTTGTATTTGTCAAAGAAAATAT
CTTGTATTTGTCAAGGAAAATATCTTGTGTTTCTaaagaaaaatatcttg
tatttttcaaggaaaaatgtcttgtatttttcaaggaaaaatgtcttgta
tttctcaaggaaaatatCTTGTGTTTCTCATCTCAAGAGAAATGTCTtgt
atttttcatggaaaatatcCTGCGTTTGCAAGGAAAATGTCTTGTATTTC
TCGACCATAATATTCTAtgtttctcaaagaaaatttcttgtatttttcaa
ggaaaatatcCTCTGCTTTGCAAggaaaatgtcctgtttttctaaagcaa
aataaatgtcttgtatttttcaaggaaaacgtCTTGtagttttcaaggaa
aatttctggtatctttcaaagaaaatttcctGTATCCtccaaaaaaatag
aaatttcaatgCCCCATTCAGATATGCTCATCGGCGAAAATGTTAAATCA
GTATTCAGTGGCATCTTGTTAATTGACCATGCTTAACAGAAACGAGTCCT
TTAAGATAAAAAGGTATGAGAGTGAGTATGCTAGGTTGGCagtaaaaacg
tcaaaatatttttggtttatttttttcaggCATCGTTTGACTTGATGTTC
AACAAACTAGATTTGACGCCGATTGGATGTGTGACACATCTCCTTCCCAA
GATAGTGGGTAGAGGGCTTGTAAGTCACttaatttgaaatctttgtTTTG
CTCCTTCCAACAAAATCTTTGAATTAAATTTCGACCCGCTGAACTCGATT
GAAAAACACTTGAGAATATTCAACAGAAGACTCCTGGTAAGAAAAAGGAA
CTGAGAATGAAAATGTCCAGGGTAGAAAGACAGTTATATTGGGAATTAAC
CAATTATTTGTTTTGCGACCGTGATTTTTGTTCTCTTTAGGCCCATTCAA
TGATGTATTTAGGAGGTCACTATTCTGCAGCAACCAGCTTTGATCGTGGT
TTGGTACTGGACATGTATGGTGTCAATTCTTTCAGTGAAGATATCGAAAA
ACGAATGTTACAACTGGCTACAAACTCGACCCATGTAAGTTTAGAATTTG
TACCCACCCTTCATTTGTACCCATtcttacacccccttctcactgaccca
ctgggaccccttcccactggaaaaattggccaaaatatcgtccccggtgg
aaaatcatcCCCCAATTTtgtcccactgaaaataatcaaataaaccaatc
ctcactgcaaaatattatactATTTTCTCATCCCCACTTAATTGTCTgac
tgaaaacaaaagaattgacatccccagccataaaacatgtgggaatatca
atccccatcgagtttcagtccgttatttttatccccactggctgaaaaaa
tcctaccgggtctgtgagaagggggtgtattctTCTTATGTACCCATTCT
TCATTTGTACCCATCCTTCATTTGTACCCATCATTCANTTACCCATCCTA
CATTTGTACCCAACCTTCATTTGTACCCATCCTTCGCATGTACCCATTCT
TACgcacccttctcacagacccactgggaccccttcccactggaaaaatt
ggccaaaatatcgtcctcgGTAGAAAATCATCCCCCAATTTtgtcccact
gaaaataatcaaataaaccaatcctcactgcaaaatattatactATTTTC
TCATCCCCACTTAATTGTCTgactgaaaacaaaagaattgacatccccag
ccataaaacatgtgggaatatcaatccccatcgagtttcagtccgttatt
tttatccccactggctgaaaaaatcctaccgggtctgtgagaagggggtg
tattctTCTTATGTACCCATTCTTCATTTGTACCCATCCTTCATTTGTAC
CCATCATTCATATGTATCATTCCTAATTTGCCTCCATCATTCATTTATAC
CTATCTGTCTCATGTACCCATTCCTCATTTACACCTATCCTTCATATGTA
TTCATCCGTCTCATGTACCTATCCTTCATACGTACCCATCCCACATTTGT
ACCCATCCTTCTTTTGTACCATATATACCCATCGTTCTCATGTACCCATA
TCTCATTTGTACCATATTTACTCATTATATGGGTACATATGAATGATGGG
TACATAAGATAGATGAGTGCATATGAATTTTGCCCAAACTTAGCTCTATG
TGGATTAAGAACCACTCCGAACAACTAAAATCGGAAATTTTATTAGTTGA
GTAAGCAAACCCAAGGAGAATCTCATCTTCATAGCTCTCCCTTTTCAATA
AGGGGAAtgccaattttttggggggCCTTTGTAGGGGAGGGGGTAGATTT
AACTTAAAAACTGGGGGAATGGGAGTGTAGGCGGGATTCAAATAAGAAAG
GATGGGTGTTGGAAATTTGGTTAattttatcattaaaaaaaggtcgCAGT
CTGTAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNgggggggggggggataccCCTGTACAAACTATGCATTCTACTTGA
AATGACCGAGAGTTTTGAGGAAGGGTTGCTCGAATAACCTGGAGTCTTCT
ACGCCAATGGTACTATTTAAGGAAGCACGGCCATTCGGTTTATTTGGTAA
CTTTCCGTGTTTATCAGTTCATTatcttttattttaataaaactcCTTCC
AACCGATAAAAGATTGCTATCGGCTCGTTTTTTCTTGCTTTGAGGTTTCT
GTTTCGaccttgatttttttctttaagcTTTTAGTTAATGTCTAGGTCAC
TGTAATCTCATAAAAGATCAAGCATTCATTCTGCGTACACAACGCTCTGC
TATAAAGAGATATGGCGGGTGTGATAATCGGACTtggttgttcagccaaa
acattcaaaaccgcCCTGCCTTTTTCCGCGACAGCGACTGCGTGTCTATT
GCTTATGTTTACGATTGCGTCCTGTTNTCATTTGTACCATATTTACTCAT
TATATGGGTACATATGAAGGATGGGTACATAAGATAGATGAGTGCATATG
AATTTTGCCCAAACTTAGCTCTATGTGGATTAAGAACCACTCCGAACAAC
TAAAATCGGAAATTTTATTAGTTGAGTAAGCAAACCCAAGGAGAATCTCA
TCTTCATAGCTCTCCCTTTTCAATAAGGGGAAtgccaattttttgggggg
CCTTTGTAGGGGAGGGGGTAGATTTAACTTAAAAACTGGGGGAATGGGAG
TGTAGGCGGGATTCAAATAAGAAAGGANCTGTTCGAAGATATAGGATACT
GTCGTTTCCGTAATCcacaaaaagagaatttttatggCAGTTTACCAAAT
ACCGAATGCTCTGTTACAATCATTCAAATGGTTTAGGGATAAAACTTTGT
TGGTTTGGTATTAAAAATGCCTCTGGATCTCGAGAATTCAAACTAGTTAG
TTAAAGTGAAGTTTTTCTCGATTTGATTCAATCGCGAATTTTATTAGGCT
GCACGTATCCCttgtatcgtgtataaaattcctgtCCGAGTCTTGGTAGT
TTTTTAGTTTCAAAAACTTAATTAGCTTAATTCCTGAatccgaccgacgg
gggtgctccgctgaggtttgaaaaatggaccctacgtgggactcgttttt
tcaaaaattttcttgaaaaagggGATTCTATTAGgccggaacaccggatt
cttccagtcatTTATACAAACTAGATCCCGTAACAATAaatgtattatca
tataacgcctatactactgtattacacacaTTATAAACGAcggcgcatcc
ccgtaacccattttgctcTAGTACCCCTCGGgcttgattagtaagtttta
tatgagaggtctttaaatttattaaaaatttgaatggctagagGTTAATA
CATTCATTGGACTGAAAATTTTGGTAACTCTCGAACGGGGATTTTATACA
CGCTACGCTAacacatcccctatatcaaaatataatatGTGGAGGCGTGC
AGCCTAGAGTTTTATTAGATGTATTATTATGGGGAACGAGGAGCAACTGA
AACAATTTGGAAAACAGCAGTTTTTACTTGTTTAATCGTGGACGGAAAAA
TGCTGATTTATGGTGTTCCTCGAGTGGATCTAGACATGAAAACTTGCGGT
AATCTGCTGCAGAAAATACGTCATTCATAAACCCGCCAATATCAAAAGAT
TTAGGGGTTTAAGAAGTTTAATAATTGGTAGttctaatttttcttcatta
aaCAAACCTTCTGTCCCATTTTCCTTATACAGTGTTTACAAGCGACGAAG
CGAATTGTTCAATTCCTACAAGACGATACTATTGAAGATATCTACAGTGA
AGAATTGAAATTGTATCAGCAATCTCTTTTGTCCAAAGAAACGAGAAAGA
AGATGAAAGATGATTGGGCGATGAGGATCAATCTCTACTCTGATATCTAG
AGAAGTGGACGATTGGTAGGATGGTATTGGATCAGATGTCAGTGGCCAAT
GGTTTGACATTGTTTGTTCCAATAGCTAGATGAGACTTAAAGGGACGATT
TATTGCTTCATGGAGAACAAGCTACAGTACAGGTTTTTCTCAACGCGATG
GAATACGCTTAACGCAATATTGTGAATTTGAGCCGTTATATTCTATCTAG
GAGTGgatgatagaccttttcataaattacgttacgaacatcacttgcct
ctttttgaaaatatcgccatggtgattaactcccagcggactTTAATAAA
ACTACtttatattcataaaaaaaatcatttaatccctcaggggggggggt
accaagtcagtgtactggaccatagggtactaacttgatttttggatttt
tttccaaaaaattagaccaccaccctttttagtacactgtactaactttt
tttcacggtcggggctttgacacc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009243XLOC_009243Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016539-exon-sc0000241-1491911889:323123..323168TCONS_00016539-exon-sc0000241-1491911889:323123..323168Clytia hemisphaericaexon
TCONS_00016539-exon-sc0000241-1510915933:323123..323168TCONS_00016539-exon-sc0000241-1510915933:323123..323168Clytia hemisphaericaexon
TCONS_00016539-exon-sc0000241-1575043694:323123..323168TCONS_00016539-exon-sc0000241-1575043694:323123..323168Clytia hemisphaericaexon
TCONS_00016539-exon-sc0000241-1491911889:329769..329837TCONS_00016539-exon-sc0000241-1491911889:329769..329837Clytia hemisphaericaexon
TCONS_00016539-exon-sc0000241-1510915933:329769..329837TCONS_00016539-exon-sc0000241-1510915933:329769..329837Clytia hemisphaericaexon
TCONS_00016539-exon-sc0000241-1575043694:329769..329837TCONS_00016539-exon-sc0000241-1575043694:329769..329837Clytia hemisphaericaexon
TCONS_00016539-exon-sc0000241-1491911889:330140..330296TCONS_00016539-exon-sc0000241-1491911889:330140..330296Clytia hemisphaericaexon
TCONS_00016539-exon-sc0000241-1510915933:330140..330296TCONS_00016539-exon-sc0000241-1510915933:330140..330296Clytia hemisphaericaexon
TCONS_00016539-exon-sc0000241-1575043694:330140..330296TCONS_00016539-exon-sc0000241-1575043694:330140..330296Clytia hemisphaericaexon
TCONS_00016539-exon-sc0000241-1491911889:330407..330876TCONS_00016539-exon-sc0000241-1491911889:330407..330876Clytia hemisphaericaexon
TCONS_00016539-exon-sc0000241-1510915933:330407..330876TCONS_00016539-exon-sc0000241-1510915933:330407..330876Clytia hemisphaericaexon
TCONS_00016539-exon-sc0000241-1575043694:330407..330876TCONS_00016539-exon-sc0000241-1575043694:330407..330876Clytia hemisphaericaexon
TCONS_00016539-exon-sc0000241-1491911889:331201..331379TCONS_00016539-exon-sc0000241-1491911889:331201..331379Clytia hemisphaericaexon
TCONS_00016539-exon-sc0000241-1510915933:331201..331379TCONS_00016539-exon-sc0000241-1510915933:331201..331379Clytia hemisphaericaexon
TCONS_00016539-exon-sc0000241-1575043694:331201..331379TCONS_00016539-exon-sc0000241-1575043694:331201..331379Clytia hemisphaericaexon
TCONS_00016539-exon-sc0000241-1491911889:331904..332024TCONS_00016539-exon-sc0000241-1491911889:331904..332024Clytia hemisphaericaexon
TCONS_00016539-exon-sc0000241-1510915933:331904..332024TCONS_00016539-exon-sc0000241-1510915933:331904..332024Clytia hemisphaericaexon
TCONS_00016539-exon-sc0000241-1575043694:331904..332024TCONS_00016539-exon-sc0000241-1575043694:331904..332024Clytia hemisphaericaexon
TCONS_00016539-exon-sc0000241-1491911889:333802..333891TCONS_00016539-exon-sc0000241-1491911889:333802..333891Clytia hemisphaericaexon
TCONS_00016539-exon-sc0000241-1510915933:333802..333891TCONS_00016539-exon-sc0000241-1510915933:333802..333891Clytia hemisphaericaexon
TCONS_00016539-exon-sc0000241-1575043694:333802..333891TCONS_00016539-exon-sc0000241-1575043694:333802..333891Clytia hemisphaericaexon
TCONS_00016539-exon-sc0000241-1491911889:334113..334256TCONS_00016539-exon-sc0000241-1491911889:334113..334256Clytia hemisphaericaexon
TCONS_00016539-exon-sc0000241-1510915933:334113..334256TCONS_00016539-exon-sc0000241-1510915933:334113..334256Clytia hemisphaericaexon
TCONS_00016539-exon-sc0000241-1575043694:334113..334256TCONS_00016539-exon-sc0000241-1575043694:334113..334256Clytia hemisphaericaexon
TCONS_00016539-exon-sc0000241-1491911889:338155..338796TCONS_00016539-exon-sc0000241-1491911889:338155..338796Clytia hemisphaericaexon
TCONS_00016539-exon-sc0000241-1510915933:338155..338796TCONS_00016539-exon-sc0000241-1510915933:338155..338796Clytia hemisphaericaexon
TCONS_00016539-exon-sc0000241-1575043694:338155..338796TCONS_00016539-exon-sc0000241-1575043694:338155..338796Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000241supercontigsc0000241:323123..338796 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
7.93886	6.48619	20.5612	19.7912	24.4756	19.8374	21.9888	23.0225	12.5825	15.8099	10.3955	7.47555	4.4185	4.67011	6.71298	7.31793	13.0592	10.1798	2.27965	2.38865	7.45351	7.80964	18.5778	19.5622	15.6895	18.6722	3.73483	2.74012	11.9456	15.4582
Blast
[Close]
BLAST of TCONS_00016539 vs. Swiss-Prot (Human)
Match: CDYL2 (Chromodomain Y-like protein 2 OS=Homo sapiens GN=CDYL2 PE=1 SV=2)

HSP 1 Score: 127.102 bits (318), Expect = 5.251e-31
Identity = 71/237 (29.96%), Postives = 130/237 (54.85%), Query Frame = 2 
Query:  665 VLCEIDKGYMTITLNNARR-HNILTTDMLDAIRNHMIKAKKNDTIKAVLFCSSGDYFCSGIDYSEFVE--CSDDKTYKILVNDLISCLRNFFTTWFSFTKPIVCAVNGPAFEFGASLVVGSDFSYSSAKASFDLMFNKLDLTPIGCVTHLLPKIVGRGLAHSMMYLGGHYSAATSFDRGLVLDMYGVNSFSEDIEKRMLQLATNSTHCLQATKRIVQFLQDDTIEDIYSEELKLYQQ 1366
            ++   ++G+  I L++    +N LT +++  +R  +  A  +D+ K +L  + G  FCSG+DYS  +    SD +     + + I   R+F   +  F KPIV A+NGPA   GAS++   D  ++S KA F   +  + LTP GC ++  P+I+G  LA+ M++ G   +A  +  RGLV  ++   +FS+++  R+ ++A+ S   L+ +K +V+      +ED+  +E  + +Q
Sbjct:  252 IVVRKEEGFTHILLSSQTSDNNALTPEIMKEVRRALCNAATDDS-KLLLLSAVGSVFCSGLDYSYLIGRLSSDRRKESTRIAEAI---RDFVKAFIQFKKPIVVAINGPALGLGASILPLCDIVWASEKAWFQTPYATIRLTPAGCSSYTFPQILGVALANEMLFCGRKLTAQEACSRGLVSQVFWPTTFSQEVMLRVKEMASCSAVVLEESKCLVRSFLKSVLEDVNEKECLMLKQ 484
The following BLAST results are available for this feature:
BLAST of TCONS_00016539 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CDYL25.251e-3129.96Chromodomain Y-like protein 2 OS=Homo sapiens GN=C... [more]
back to top