TCONS_00016541 (transcript) - C. hemisphaerica

Overview
NameTCONS_00016541
Unique NameTCONS_00016541
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2820

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00016541 ID=TCONS_00016541|Name=TCONS_00016541|organism=Clytia hemisphaerica|type=transcript|length=2820bp
TGGTGTAAAAGAGTTTGCGTATATCTTTATCCTGCTTTGGATAGGGTTAA
ACTTTGTATTAGCACATCTTTGCTTTATTGGTATCATTTCTCTATTTACC
TGTTATGTTGAATGATATATTTCGTGTAGCATTTTTACCCGAGCTCTGCA
TCTACGTTCGTCTAGAGTTTCAAGGTCAGCTTTTCTTCTTTACATTGTTG
GGCTTACAGTCTGTTGCCACGAGCTGTAGATCCAGCGCAAACTCTTTCTC
TGAACCATTTCAATTTTAGCTTTTAAAGTTTCATTTCCAGCTGGGTCCCA
AACAGTTGATGCATACTCTAATGTTGGTcttatgaagattttaaagcatt
taagcCGCATTTCTGGGTTACTCTTGACAAGATTTCTGGTATTGAACCAG
TATTGTTTGCTTTTGCACAGATATTTGATACATGTGTATTCCACAACAGG
CCTTTTTGCAATGTCACACCAAGGTATTTCGCTTTATCAACTTTCTCAAT
CTCTTTTCCATGGATTTGATAATCAGCGTTGATGATCTTACGTTTGTTTG
TTATCCTCAGCAGCTAGCAGCACTTTTCTGGATGAAATTCCATTGACCAT
TTTTGCTCCCAAAGAACGAGtttatttaaatcattttgCAGTTGTTTTGC
GTCTTTGGATGACATTATTTTCCGGTACAGGTAAGAATCGTCAGCGAATA
AAGCAAGTTTTGAATTCGTTTCTAATGGCATATCATTGATATAGGCGAGA
AACAGGAGGGGGCCGAGAACGGTACCTTGGGGACACCTGAAATGACTGCT
GAATGTTTAGATGAAGTACCTCGAACAACGTCACATTGAGTTCTATCATG
GAGAAAGTCTGATATCCAGTTTAGAATGTCACCGTTTATACcgtaatgtt
tcaatttcagtaTGAGTTTCCTATCACTAAAATATGTttacttttcagaa
aaaattaaagtcCTTTTGAAAATGAACAATTATTACCATGCAAGTGGAta
caacaaaaatatttgagGTTGAACGCATAGTTTGCCATCGAGCTCACAAA
GGGAAAGAAGAATTTTTAGTGTATTGGAAAGGATTTGAAAATCCTACTTG
GGAACCAGTGGAAAATCTTCTTTCTTGTGGAGACCTGATTGAACAATTTC
ATAGACAGGCCAAGCCCATACCAGGTGCCAATCCACATCAGCTTATACGA
ACAGCTAAAGCAAAGACAGTCCATGTTAAAATGTTATTGACACGCAAGAA
TAAACACAAACGTAAACTGACACCATCCTTGTCTGAACCAGATACTAATG
ATAAATCAATTACACCTCCATTCAAAAGAAAAGGATTAAGTGAAAGTGAA
AAACTAATCCGAGATACACTTCTACACGAATCAAAGACAATGAAGCCTGA
AAATACTTGTCTGAATAAGATAAATGGACTTTTTGATTGTTATGATAATA
ACCTCAATAATAATGATATAAAACCAATGGACAATAATgtaccaaataaa
aaattgaatggGCGTAGGACAGTTTCAGATAGTTATTATAGAGGGAGGAA
CGAACCATCAAAATTGGTATTATGTGAAATAGATAAAGGTTATATGACGA
TCACTTTGAATAATGCCAGGAgacacaatatattgacaacTGATATGCTG
GATGCAATCAGAAATCATATGataaaagcaaagaaaaatgatACCATCAA
GGCAGTTCTTTTTTGTAGTAGTGGAGATTATTTTTGCTCTGGTATTGACT
ACAGTGAATTCGTGGAGTGCTCTGATGACAAAACTTATAAAATACTTGTC
AACGATCTGATATCTTGTTTAAGGAATTTCTTTACAACCTGGTTCAGCTT
CACAAAGCCTATTGTATGTGCTGTCAATGGGCCAGCTTTCGAATTCGGAG
CGAGTCTGGTGGTTGGATCAGATTTCTCTTACTCTTCTGCCAaggCATCG
TTTGACTTGATGTTCAACAAACTAGATTTGACGCCGATTGGATGTGTGAC
ACATCTCCTTCCCAAGATAGTGGGTAGAGGGCTTGCCCATTCAATGATGT
ATTTAGGAGGTCACTATTCTGCAGCAACCAGCTTTGATCGTGGTTTGGTA
CTGGACATGTATGGTGTCAATTCTTTCAGTGAAGATATCGAAAAACGAAT
GTTACAACTGGCTACAAACTCGACCCATTGTTTACAAGCGACGAAGCGAA
TTGTTCAATTCCTACAAGACGATACTATTGAAGATATCTACAGTGAAGAA
TTGAAATTGTATCAGCAATCTCTTTTGTCCAAAGAAACGAGAAAGAAGAT
GAAAGATGATTGGGCGATGAGGATCAATCTCTACTCTGATATCTAGAGAA
GTGGACGATTGGTAGGATGGTATTGGATCAGATGTCAGTGGCCAATGGTT
TGACATTGTTTGTTCCAATAGCTAGATGAGACTTAAAGGGACGATTTATT
GCTTCATGGAGAACAAGCTACAGTACAGGTTTTTCTCAACGCGATGGAAT
ACGCTTAACGCAATATTGTGAATTTGAGCCGTTATATTCTATCTAGGAGT
Ggatgatagaccttttcataaattacgttacgaacatcacttgcctcttt
ttgaaaatatcgccatggtgattaactcccagcggactTTAATAAAACTA
Ctttatattcataaaaaaaatcatttaatccctcaggggggggggtacca
agtcagtgtactggaccatagggtactaacttgatttttggatttttttc
caaaaaattagaccaccaccctttttagtacactgtactaactttttttc
acggtcggggctttgacacc
Run BLAST on NCBI

transcript from alignment at sc0000241:328821..338796+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00016541 ID=TCONS_00016541|Name=TCONS_00016541|organism=Clytia hemisphaerica|type=transcript|length=9976bp|location=Sequence derived from alignment at sc0000241:328821..338796+ (Clytia hemisphaerica)
TGGTGTAAAAGAGTTTGCGTATATCTTTATCCTGCTTTGGATAGGGTTAA
ACTTTGTATTAGCACATCTTTGCTTTATTGGTATCATTTCTCTATTTACC
TGTTATGTTGAATGATATATTTCGTGTAGCATTTTTACCCGAGCTCTGCA
TCTACGTTCGTCTAGAGTTTCAAGGTCAGCTTTTCTTCTTTACATTGTTG
GGCTTACAGTCTGTTGCCACGAGCTGTAGATCCAGCGCAAACTCTTTCTC
TGAACCATTTCAATTTTAGCTTTTAAAGTTTCATTTCCAGCTGGGTCCCA
AACAGTTGATGCATACTCTAATGTTGGTcttatgaagattttaaagcatt
taagcCGCATTTCTGGGTTACTCTTGACAAGATTTCTGGTATTGAACCAG
TATTGTTTGCTTTTGCACAGATATTTGATACATGTGTATTCCACAACAGG
CCTTTTTGCAATGTCACACCAAGGTATTTCGCTTTATCAACTTTCTCAAT
CTCTTTTCCATGGATTTGATAATCAGCGTTGATGATCTTACGTTTGTTTG
TTATCCTCAGCAGCTAGCAGCACTTTTCTGGATGAAATTCCATTGACCAT
TTTTGCTCCCAAAGAACGAGtttatttaaatcattttgCAGTTGTTTTGC
GTCTTTGGATGACATTATTTTCCGGTACAGGTAAGAATCGTCAGCGAATA
AAGCAAGTTTTGAATTCGTTTCTAATGGCATATCATTGATATAGGCGAGA
AACAGGAGGGGGCCGAGAACGGTACCTTGGGGACACCTGAAATGACTGCT
GAATGTTTAGATGAAGTACCTCGAACAACGTCACATTGAGTTCTATCATG
GAGAAAGTCTGATATCCAGTTTAGAATGTCACCGTTTATACcgtaatgtt
tcaatttcagtaTGAGTTTCCTATCACTAAAATATGTttacttttcagaa
aaaattaaagtcCTTTTGAAAATGAACAATTATTACCATGCAAGTGGAta
caacaaaaatatttgaggTCAGTATCTTTTTTGTTTAGttcttgttacaa
gttttgaataatattttGTTGTTGTCTTGTTATACTGGTCAATAAACCAA
ATTCAAAAATCATTCACGTTGATCCCACCAaagctttatttttgtttttt
cttaaacatAGAACTTTTCTTCCCATCATCAGTAAAATATTCATAGATAA
aaacaaattcataaaactGATAAATCTGCTCACaatttaaaatcagtact
ttaaGTGTGTCAATTCTTGAGTAAAGATTTAAGGAAATAACCTCCTCAGC
TTTTCAATTATGTTTCAAGGTTGAACGCATAGTTTGCCATCGAGCTCACA
AAGGGAAAGAAGAATTTTTAGTGTATTGGAAAGGATTTGAAAATCCTACT
TGGGAACCAGTGGAAAATCTTCTTTCTTGTGGAGACCTGATTGAACAATT
TCATAGACAGGCCAAGCCCATACCAGGTAAGCAATGTTATTAGAATGAGA
GCCAGTTATTCTGCCTTGGGGAGAGAGGATGAATTTAAATGTTTGAAATC
TCAAAATatatgacattttttaaaattatctttaaGGTGCCAATCCACAT
CAGCTTATACGAACAGCTAAAGCAAAGACAGTCCATGTTAAAATGTTATT
GACACGCAAGAATAAACACAAACGTAAACTGACACCATCCTTGTCTGAAC
CAGATACTAATGATAAATCAATTACACCTCCATTCAAAAGAAAAGGATTA
AGTGAAAGTGAAAAACTAATCCGAGATACACTTCTACACGAATCAAAGAC
AATGAAGCCTGAAAATACTTGTCTGAATAAGATAAATGGACTTTTTGATT
GTTATGATAATAACCTCAATAATAATGATATAAAACCAATGGACAATAAT
gtaccaaataaaaaattgaatggGCGTAGGACAGTTTCAGATAGTTATTA
TAGAGGGAGGAACGAACCATCAAAATTGGTATTATGTGAAATAGATAAAG
GTTATATGACGATCACTTTGAATAATGCCAGGAgacacaatatattgaca
acTGATGTGAGTATACAAAAAGTTTGAGCCAACAAGTTACCAAATGCTTT
ATTTTATTCAGCAAATAGATGGAAGGTATTATTGCTTAAGGAAAATAAAT
ACAAACTACTATTTTTTCGGCCCCATACATTTCCTCCCGCTTTCAATTTC
ATACTGATTTGAAATCACAATAGAATAATAATGGTATCCTCgcactcttt
tttttaaattgtttttccaTTAGATTTAAATATGCTTCTGGGATTTAAAA
TCAGAACTACAAAAATATTCCAGAAATTATAAGATGTGACACTATTTAAG
CCATGATCTTTTGCAATTTTGTTGTTTCAGATGCTGGATGCAATCAGAAA
TCATATGataaaagcaaagaaaaatgatACCATCAAGGCAGTTCTTTTTT
GTAGTAGTGGAGATTATTTTTGCTCTGGTATTGACTACAGTGAATTCGTG
GAGTGCTCTGATGACAAAACTTATAAAATACTTGTCAACGATCTGATATC
TTGTTTAAGGTAAagtaaaactttttcaatgtctttgttgtttgttcTGC
TCTCTTACCAAACTAAGTAGCATATTCTACTACCTTTAGTAACTCTCCAA
AGGAAATTTTCAGTACTCTAGGGAAGAAACTTTTTCTGaatggaaatttt
tgcttttcgTGACGATTAACTTTCATGGATTGTGCTCTTCAGAATATGGG
AAGAAACGCAATTTGTCAAAATATCTCTTTCAACTCTGTTTTTATCCCAG
ATAATTATACCAAAATAGAACTATTTTCAACCTAAAATGTTTCCTGAAAt
aactttaatttaaaatttttatattggagggtaaaatttaaggaaaactA
GGCTTCTacgagatgaaaaatcttaTTGACTTTCTTATTTCTTATTGACT
TACATCTGTCATCAAAATAAGCAATAAAAACACCTTGTGAAgcagatatt
taattttcagagcctaaattttgtcaaaataaaagaGGAAGATTAGCATG
ATGACTGAAAGACTAGTTCTTGTTCTTTTCTAGGAATTTCTTTACAACCT
GGTTCAGCTTCACAAAGCCTATTGTATGTGCTGTCAATGGGCCAGCTTTC
GAATTCGGAGCGAGTCTGGTGGTTGGATCAGATTTCTCTTACTCTTCTGC
CAaggtatgttttattttatatttttaaaaatatgtattattaaaaacct
aaaaatctTAGTAATATTTAAGGAGACACCAGCAAGATGAATACTTTAGA
AGTATCTTTTAGAATTTAATTAATATAACTATAATGATATTATGATATGA
TAAAAAGGATTAGTTTAACTGAGGATATTTTGTGTATTTCCATAAGAAAA
CTATTTATGTTTTCAAAGCAAAGTAATTTTTGCCAAGAAAGAATTAATGA
ATGTATTTCTAAATGAAGTTTTAAGCCTTTGTAAAGTGCATTTTCCAAGA
AACagatttatatttttcaaggaactgtcttttattttcaagcgaaatgt
tttttttcaaagaaattatctTGTATTTTTAATGGGAAATGACTCGTATT
TTCCAAGGACTATATCCTgtgtttctcaaaaaaaatatcttgtattttct
gaggaaaatatcTTGCCTTTCTCAAGGATTATATTTTTAACGAAGATTTT
CAACAAAGATAttctgtatttctcaaggaaaatgtcatgtatttttcaaa
taaaatatttctcaagaaaatatccgtgtttcttaaaaaaatgtcaatga
aaaaaaatttttttttcgttgaaGAGACGCAGAATATTTCTTAAGGAAAA
TGTCTTGTATTTGTCAAGGAAATTATCTTctgtttcttaagaaaaatgtc
ttgtatttgtcaaggaaaatattttgtgtTTCTAAAGAAAAATGTCTTGT
ATTTGTCAAGGAAAAATGtcttgtatttctcaaggaaaatatCTTATGTT
TCTCAAGAAAAATGTCTTGTCTTTTCCATGGAAAATATCTTGAGATTTGC
AAGGAAAATgtcttatatttttcaagtagAGTATCCTGTGTTTCTCAAGA
GAAATGTCTtgtatttttcatggaaaatatcCTGCTTTTGCAAGGAAAAT
GTCTTGTATTTCTCAACcacaatacatgttttttcttttataagcataac
gtttataagcatatgcaggctcagtttttggtacctaaacaatggctcta
ttgtttgagaacaatagaatgctaagcataatgcgagcttgatgtagggg
cagacacttgcttataaaaagaaaaacatgtattctgtgtttctcaaaga
aaatttcttgtatttttcaagtAAAATGTCTTGTATTTGTCAAAGAAAAT
ATCTTGTATTTGTCAAGGAAAATATCTTGTGTTTCTaaagaaaaatatct
tgtatttttcaaggaaaaatgtcttgtatttttcaaggaaaaatgtcttg
tatttctcaaggaaaatatCTTGTGTTTCTCATCTCAAGAGAAATGTCTt
gtatttttcatggaaaatatcCTGCGTTTGCAAGGAAAATGTCTTGTATT
TCTCGACCATAATATTCTAtgtttctcaaagaaaatttcttgtatttttc
aaggaaaatatcCTCTGCTTTGCAAggaaaatgtcctgtttttctaaagc
aaaataaatgtcttgtatttttcaaggaaaacgtCTTGtagttttcaagg
aaaatttctggtatctttcaaagaaaatttcctGTATCCtccaaaaaaat
agaaatttcaatgCCCCATTCAGATATGCTCATCGGCGAAAATGTTAAAT
CAGTATTCAGTGGCATCTTGTTAATTGACCATGCTTAACAGAAACGAGTC
CTTTAAGATAAAAAGGTATGAGAGTGAGTATGCTAGGTTGGCagtaaaaa
cgtcaaaatatttttggtttatttttttcaggCATCGTTTGACTTGATGT
TCAACAAACTAGATTTGACGCCGATTGGATGTGTGACACATCTCCTTCCC
AAGATAGTGGGTAGAGGGCTTGTAAGTCACttaatttgaaatctttgtTT
TGCTCCTTCCAACAAAATCTTTGAATTAAATTTCGACCCGCTGAACTCGA
TTGAAAAACACTTGAGAATATTCAACAGAAGACTCCTGGTAAGAAAAAGG
AACTGAGAATGAAAATGTCCAGGGTAGAAAGACAGTTATATTGGGAATTA
ACCAATTATTTGTTTTGCGACCGTGATTTTTGTTCTCTTTAGGCCCATTC
AATGATGTATTTAGGAGGTCACTATTCTGCAGCAACCAGCTTTGATCGTG
GTTTGGTACTGGACATGTATGGTGTCAATTCTTTCAGTGAAGATATCGAA
AAACGAATGTTACAACTGGCTACAAACTCGACCCATGTAAGTTTAGAATT
TGTACCCACCCTTCATTTGTACCCATtcttacacccccttctcactgacc
cactgggaccccttcccactggaaaaattggccaaaatatcgtccccggt
ggaaaatcatcCCCCAATTTtgtcccactgaaaataatcaaataaaccaa
tcctcactgcaaaatattatactATTTTCTCATCCCCACTTAATTGTCTg
actgaaaacaaaagaattgacatccccagccataaaacatgtgggaatat
caatccccatcgagtttcagtccgttatttttatccccactggctgaaaa
aatcctaccgggtctgtgagaagggggtgtattctTCTTATGTACCCATT
CTTCATTTGTACCCATCCTTCATTTGTACCCATCATTCANTTACCCATCC
TACATTTGTACCCAACCTTCATTTGTACCCATCCTTCGCATGTACCCATT
CTTACgcacccttctcacagacccactgggaccccttcccactggaaaaa
ttggccaaaatatcgtcctcgGTAGAAAATCATCCCCCAATTTtgtccca
ctgaaaataatcaaataaaccaatcctcactgcaaaatattatactATTT
TCTCATCCCCACTTAATTGTCTgactgaaaacaaaagaattgacatcccc
agccataaaacatgtgggaatatcaatccccatcgagtttcagtccgtta
tttttatccccactggctgaaaaaatcctaccgggtctgtgagaaggggg
tgtattctTCTTATGTACCCATTCTTCATTTGTACCCATCCTTCATTTGT
ACCCATCATTCATATGTATCATTCCTAATTTGCCTCCATCATTCATTTAT
ACCTATCTGTCTCATGTACCCATTCCTCATTTACACCTATCCTTCATATG
TATTCATCCGTCTCATGTACCTATCCTTCATACGTACCCATCCCACATTT
GTACCCATCCTTCTTTTGTACCATATATACCCATCGTTCTCATGTACCCA
TATCTCATTTGTACCATATTTACTCATTATATGGGTACATATGAATGATG
GGTACATAAGATAGATGAGTGCATATGAATTTTGCCCAAACTTAGCTCTA
TGTGGATTAAGAACCACTCCGAACAACTAAAATCGGAAATTTTATTAGTT
GAGTAAGCAAACCCAAGGAGAATCTCATCTTCATAGCTCTCCCTTTTCAA
TAAGGGGAAtgccaattttttggggggCCTTTGTAGGGGAGGGGGTAGAT
TTAACTTAAAAACTGGGGGAATGGGAGTGTAGGCGGGATTCAAATAAGAA
AGGATGGGTGTTGGAAATTTGGTTAattttatcattaaaaaaaggtcgCA
GTCTGTAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNgggggggggggggataccCCTGTACAAACTATGCATTCTACTT
GAAATGACCGAGAGTTTTGAGGAAGGGTTGCTCGAATAACCTGGAGTCTT
CTACGCCAATGGTACTATTTAAGGAAGCACGGCCATTCGGTTTATTTGGT
AACTTTCCGTGTTTATCAGTTCATTatcttttattttaataaaactcCTT
CCAACCGATAAAAGATTGCTATCGGCTCGTTTTTTCTTGCTTTGAGGTTT
CTGTTTCGaccttgatttttttctttaagcTTTTAGTTAATGTCTAGGTC
ACTGTAATCTCATAAAAGATCAAGCATTCATTCTGCGTACACAACGCTCT
GCTATAAAGAGATATGGCGGGTGTGATAATCGGACTtggttgttcagcca
aaacattcaaaaccgcCCTGCCTTTTTCCGCGACAGCGACTGCGTGTCTA
TTGCTTATGTTTACGATTGCGTCCTGTTNTCATTTGTACCATATTTACTC
ATTATATGGGTACATATGAAGGATGGGTACATAAGATAGATGAGTGCATA
TGAATTTTGCCCAAACTTAGCTCTATGTGGATTAAGAACCACTCCGAACA
ACTAAAATCGGAAATTTTATTAGTTGAGTAAGCAAACCCAAGGAGAATCT
CATCTTCATAGCTCTCCCTTTTCAATAAGGGGAAtgccaattttttgggg
ggCCTTTGTAGGGGAGGGGGTAGATTTAACTTAAAAACTGGGGGAATGGG
AGTGTAGGCGGGATTCAAATAAGAAAGGANCTGTTCGAAGATATAGGATA
CTGTCGTTTCCGTAATCcacaaaaagagaatttttatggCAGTTTACCAA
ATACCGAATGCTCTGTTACAATCATTCAAATGGTTTAGGGATAAAACTTT
GTTGGTTTGGTATTAAAAATGCCTCTGGATCTCGAGAATTCAAACTAGTT
AGTTAAAGTGAAGTTTTTCTCGATTTGATTCAATCGCGAATTTTATTAGG
CTGCACGTATCCCttgtatcgtgtataaaattcctgtCCGAGTCTTGGTA
GTTTTTTAGTTTCAAAAACTTAATTAGCTTAATTCCTGAatccgaccgac
gggggtgctccgctgaggtttgaaaaatggaccctacgtgggactcgttt
tttcaaaaattttcttgaaaaagggGATTCTATTAGgccggaacaccgga
ttcttccagtcatTTATACAAACTAGATCCCGTAACAATAaatgtattat
catataacgcctatactactgtattacacacaTTATAAACGAcggcgcat
ccccgtaacccattttgctcTAGTACCCCTCGGgcttgattagtaagttt
tatatgagaggtctttaaatttattaaaaatttgaatggctagagGTTAA
TACATTCATTGGACTGAAAATTTTGGTAACTCTCGAACGGGGATTTTATA
CACGCTACGCTAacacatcccctatatcaaaatataatatGTGGAGGCGT
GCAGCCTAGAGTTTTATTAGATGTATTATTATGGGGAACGAGGAGCAACT
GAAACAATTTGGAAAACAGCAGTTTTTACTTGTTTAATCGTGGACGGAAA
AATGCTGATTTATGGTGTTCCTCGAGTGGATCTAGACATGAAAACTTGCG
GTAATCTGCTGCAGAAAATACGTCATTCATAAACCCGCCAATATCAAAAG
ATTTAGGGGTTTAAGAAGTTTAATAATTGGTAGttctaatttttcttcat
taaaCAAACCTTCTGTCCCATTTTCCTTATACAGTGTTTACAAGCGACGA
AGCGAATTGTTCAATTCCTACAAGACGATACTATTGAAGATATCTACAGT
GAAGAATTGAAATTGTATCAGCAATCTCTTTTGTCCAAAGAAACGAGAAA
GAAGATGAAAGATGATTGGGCGATGAGGATCAATCTCTACTCTGATATCT
AGAGAAGTGGACGATTGGTAGGATGGTATTGGATCAGATGTCAGTGGCCA
ATGGTTTGACATTGTTTGTTCCAATAGCTAGATGAGACTTAAAGGGACGA
TTTATTGCTTCATGGAGAACAAGCTACAGTACAGGTTTTTCTCAACGCGA
TGGAATACGCTTAACGCAATATTGTGAATTTGAGCCGTTATATTCTATCT
AGGAGTGgatgatagaccttttcataaattacgttacgaacatcacttgc
ctctttttgaaaatatcgccatggtgattaactcccagcggactTTAATA
AAACTACtttatattcataaaaaaaatcatttaatccctcaggggggggg
gtaccaagtcagtgtactggaccatagggtactaacttgatttttggatt
tttttccaaaaaattagaccaccaccctttttagtacactgtactaactt
tttttcacggtcggggctttgacacc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009243XLOC_009243Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016541-exon-sc0000241-1491911889:328821..329837TCONS_00016541-exon-sc0000241-1491911889:328821..329837Clytia hemisphaericaexon
TCONS_00016541-exon-sc0000241-1510915933:328821..329837TCONS_00016541-exon-sc0000241-1510915933:328821..329837Clytia hemisphaericaexon
TCONS_00016541-exon-sc0000241-1575043694:328821..329837TCONS_00016541-exon-sc0000241-1575043694:328821..329837Clytia hemisphaericaexon
TCONS_00016541-exon-sc0000241-1491911889:330140..330296TCONS_00016541-exon-sc0000241-1491911889:330140..330296Clytia hemisphaericaexon
TCONS_00016541-exon-sc0000241-1510915933:330140..330296TCONS_00016541-exon-sc0000241-1510915933:330140..330296Clytia hemisphaericaexon
TCONS_00016541-exon-sc0000241-1575043694:330140..330296TCONS_00016541-exon-sc0000241-1575043694:330140..330296Clytia hemisphaericaexon
TCONS_00016541-exon-sc0000241-1491911889:330407..330876TCONS_00016541-exon-sc0000241-1491911889:330407..330876Clytia hemisphaericaexon
TCONS_00016541-exon-sc0000241-1510915933:330407..330876TCONS_00016541-exon-sc0000241-1510915933:330407..330876Clytia hemisphaericaexon
TCONS_00016541-exon-sc0000241-1575043694:330407..330876TCONS_00016541-exon-sc0000241-1575043694:330407..330876Clytia hemisphaericaexon
TCONS_00016541-exon-sc0000241-1491911889:331201..331379TCONS_00016541-exon-sc0000241-1491911889:331201..331379Clytia hemisphaericaexon
TCONS_00016541-exon-sc0000241-1510915933:331201..331379TCONS_00016541-exon-sc0000241-1510915933:331201..331379Clytia hemisphaericaexon
TCONS_00016541-exon-sc0000241-1575043694:331201..331379TCONS_00016541-exon-sc0000241-1575043694:331201..331379Clytia hemisphaericaexon
TCONS_00016541-exon-sc0000241-1491911889:331904..332024TCONS_00016541-exon-sc0000241-1491911889:331904..332024Clytia hemisphaericaexon
TCONS_00016541-exon-sc0000241-1510915933:331904..332024TCONS_00016541-exon-sc0000241-1510915933:331904..332024Clytia hemisphaericaexon
TCONS_00016541-exon-sc0000241-1575043694:331904..332024TCONS_00016541-exon-sc0000241-1575043694:331904..332024Clytia hemisphaericaexon
TCONS_00016541-exon-sc0000241-1491911889:333802..333891TCONS_00016541-exon-sc0000241-1491911889:333802..333891Clytia hemisphaericaexon
TCONS_00016541-exon-sc0000241-1510915933:333802..333891TCONS_00016541-exon-sc0000241-1510915933:333802..333891Clytia hemisphaericaexon
TCONS_00016541-exon-sc0000241-1575043694:333802..333891TCONS_00016541-exon-sc0000241-1575043694:333802..333891Clytia hemisphaericaexon
TCONS_00016541-exon-sc0000241-1491911889:334113..334256TCONS_00016541-exon-sc0000241-1491911889:334113..334256Clytia hemisphaericaexon
TCONS_00016541-exon-sc0000241-1510915933:334113..334256TCONS_00016541-exon-sc0000241-1510915933:334113..334256Clytia hemisphaericaexon
TCONS_00016541-exon-sc0000241-1575043694:334113..334256TCONS_00016541-exon-sc0000241-1575043694:334113..334256Clytia hemisphaericaexon
TCONS_00016541-exon-sc0000241-1491911889:338155..338796TCONS_00016541-exon-sc0000241-1491911889:338155..338796Clytia hemisphaericaexon
TCONS_00016541-exon-sc0000241-1510915933:338155..338796TCONS_00016541-exon-sc0000241-1510915933:338155..338796Clytia hemisphaericaexon
TCONS_00016541-exon-sc0000241-1575043694:338155..338796TCONS_00016541-exon-sc0000241-1575043694:338155..338796Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000241supercontigsc0000241:328821..338796 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.37335	2.60181	2.61006	2.6218	4.62269	3.85961	2.90395	3.83699	1.1818	2.43259	1.08607	1.44774	2.17959	1.52778	1.43861	1.97321	1.41519	1.42443	1.31868	2.32357	2.11401	3.23555	1.21147	2.14626	2.57811	2.7857	3.1727	2.93824	3.39181	2.99245
Blast
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BLAST of TCONS_00016541 vs. Swiss-Prot (Human)
Match: CDYL2 (Chromodomain Y-like protein 2 OS=Homo sapiens GN=CDYL2 PE=1 SV=2)

HSP 1 Score: 127.102 bits (318), Expect = 1.471e-30
Identity = 71/237 (29.96%), Postives = 130/237 (54.85%), Query Frame = 1 
Query: 1567 VLCEIDKGYMTITLNNARR-HNILTTDMLDAIRNHMIKAKKNDTIKAVLFCSSGDYFCSGIDYSEFVE--CSDDKTYKILVNDLISCLRNFFTTWFSFTKPIVCAVNGPAFEFGASLVVGSDFSYSSAKASFDLMFNKLDLTPIGCVTHLLPKIVGRGLAHSMMYLGGHYSAATSFDRGLVLDMYGVNSFSEDIEKRMLQLATNSTHCLQATKRIVQFLQDDTIEDIYSEELKLYQQ 2268
            ++   ++G+  I L++    +N LT +++  +R  +  A  +D+ K +L  + G  FCSG+DYS  +    SD +     + + I   R+F   +  F KPIV A+NGPA   GAS++   D  ++S KA F   +  + LTP GC ++  P+I+G  LA+ M++ G   +A  +  RGLV  ++   +FS+++  R+ ++A+ S   L+ +K +V+      +ED+  +E  + +Q
Sbjct:  252 IVVRKEEGFTHILLSSQTSDNNALTPEIMKEVRRALCNAATDDS-KLLLLSAVGSVFCSGLDYSYLIGRLSSDRRKESTRIAEAI---RDFVKAFIQFKKPIVVAINGPALGLGASILPLCDIVWASEKAWFQTPYATIRLTPAGCSSYTFPQILGVALANEMLFCGRKLTAQEACSRGLVSQVFWPTTFSQEVMLRVKEMASCSAVVLEESKCLVRSFLKSVLEDVNEKECLMLKQ 484
The following BLAST results are available for this feature:
BLAST of TCONS_00016541 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CDYL21.471e-3029.96Chromodomain Y-like protein 2 OS=Homo sapiens GN=C... [more]
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