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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00016553 ID=TCONS_00016553|Name=TCONS_00016553|organism=Clytia hemisphaerica|type=transcript|length=4069bpRun BLAST on NCBI protein sequence of TCONS_00016553-protein >TCONS_00016553-protein ID=TCONS_00016553-protein|Name=TCONS_00016553-protein|organism=Clytia hemisphaerica|type=polypeptide|length=902bp HRHFLLLSSFRFLHDCFNSKIIHKMPSNVKVRDLIRSIRAARTAADEREVRun BLAST on NCBI transcript from alignment at sc0000241:292852..322742- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00016553 ID=TCONS_00016553|Name=TCONS_00016553|organism=Clytia hemisphaerica|type=transcript|length=29891bp|location=Sequence derived from alignment at sc0000241:292852..322742- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000241:292852..322742- >TCONS_00016553 ID=TCONS_00016553|Name=TCONS_00016553|organism=Clytia hemisphaerica|type=CDS|length=56889bp|location=Sequence derived from alignment at sc0000241:292852..322742- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00016553 vs. Swiss-Prot (Human)
Match: AP1G1 (AP-1 complex subunit gamma-1 OS=Homo sapiens GN=AP1G1 PE=1 SV=5) HSP 1 Score: 826.624 bits (2134), Expect = 0.000e+0 Identity = 401/587 (68.31%), Postives = 505/587 (86.03%), Query Frame = 3
Query: 75 MPSNVKVRDLIRSIRAARTAADEREVITKECALIRTSFREEDNDARSRNVAKLLYIHMLGYPAHFGQLECLKLIASQKFNDKRMGYLGAMMLLDEKQDVHLLVTNCLKNDLNHTSQYVQGLALCTLGSICSAEMSRDLAGEVERLMKAGNSYIKKKACLCAVRVIRKVPELTEMFVSLTRSLMSDNNHGVQLTAIVLISEMCILSPDVVSHFRRYVPNLVRSLKSLIQAGYSPEHDVNGISDPFLQVHIXXXXXXXGHKDMDSSETMNDLLAQVATNTETTKNVGNSVLYETVLTIMDIKSESGLRVLGINILGRFLLNNDKNIRYVALNTLLKTLNIDNSAVQRHRSTVLECLKDPDISIRRRAIELSFALVNTSNIRSMMKELIFFLENCDVEFKQYTASNIITVAEKFAPNKRWHIDTILKVLTTASLYVRDDLVSTLIQLISGTDTLHTYTVQQLFRAIQDDKTQQSLVQMASWCIGEYGXXXXXXXXXXXXXXXVTESDVVALLDGILGSTLSSPVTKEYALTAVMKLTTRFTTCNDQIQLVINNYTTNTDVELQQRSVEYDAIFRKYEPLRPGLLERMPLI 1835
MP+ +++R+LIR+IR ART A+ERE+I KECA IR+SFREEDN R RNVAKLLY+HMLGYPAHFGQLECLKLIASQKF DKR+GYLGAM+LLDE+QDVHLL+TNC+KNDLNH++Q+VQGLALCTLG + S+EM RDLAGEVE+L+K NSY++KKA LCAV VIRKVPEL EMF+ T++L+++ NHGV T++VL++EMC SPD+++HFR+ VP LVR LK+LI +GYSPEHDV+GISDPFLQV ILRLLR+LG D DSSE MND+LAQVATNTET+KNVGN++LYETVLTIMDIKSESGLRVL INILGRFLLNNDKNIRYVAL +LLKT+ D++AVQRHRST+++CLKD D+SI+RRA+ELSFALVN +NIR MMKEL++FL++C+ EFK AS I AEK+AP+KRWHIDTI++VLTTA YVRDD V LIQLI+ + +H YTVQ+L++AI D +QQ LVQ+A+WCIGEYG+LL+S EE+EP+ VTE +V+ +L+ +L S +S+ VT+ YALTA+MKL+TRFT ++I+ V++ Y ++ DVELQQR+VEY+A+F+KY+ +R LLERMP++
Sbjct: 1 MPAPIRLRELIRTIRTARTQAEEREMIQKECAAIRSSFREEDNTYRCRNVAKLLYMHMLGYPAHFGQLECLKLIASQKFTDKRIGYLGAMLLLDERQDVHLLMTNCIKNDLNHSTQFVQGLALCTLGCMGSSEMCRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELMEMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKSESGLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQTDHNAVQRHRSTIVDCLKDLDVSIKRRAMELSFALVNGNNIRGMMKELLYFLDSCEPEFKADCASGIFLAAEKYAPSKRWHIDTIMRVLTTAGSYVRDDAVPNLIQLITNSVEMHAYTVQRLYKAILGDYSQQPLVQVAAWCIGEYGDLLVSGQCEEEEPIQVTEDEVLDILESVLISNMSTSVTRGYALTAIMKLSTRFTCTVNRIKKVVSIYGSSIDVELQQRAVEYNALFKKYDHMRSALLERMPVM 587 HSP 2 Score: 112.849 bits (281), Expect = 4.928e-25 Identity = 55/134 (41.04%), Postives = 85/134 (63.43%), Query Frame = 3
Query: 2304 NDLMSAPAPQPPTSEFPTITAFEKNGLKINFSFGDVGSQGPGTFITKMTATNSQASTMENFLFQAAVPKTFKLQMQSPSGNTLASMNTGTVTQAMLVGNPNKEPVRMLLRISYTLNGQNVQEQGQVDSFPSQLW 2705
+ L S P + P+ITA+ KNGLKI F+F + + P + + A+NS M +F+FQAAVPKTF+LQ+ SPS + + + NTGT+TQ + V NP K+ +RM ++++Y G +Q+ +V++FP Q W
Sbjct: 689 DGLSSQPLFNDIAAGIPSITAYSKNGLKIEFTF-ERSNTNPSVTVITIQASNSTELDMTDFVFQAAVPKTFQLQLLSPSSSIVPAFNTGTITQVIKVLNPQKQQLRMRIKLTYNHKGSAMQDLAEVNNFPPQSW 821 The following BLAST results are available for this feature:
BLAST of TCONS_00016553 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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