TCONS_00016557 (transcript) - C. hemisphaerica

Overview
NameTCONS_00016557
Unique NameTCONS_00016557
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length865

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00016557 ID=TCONS_00016557|Name=TCONS_00016557|organism=Clytia hemisphaerica|type=transcript|length=865bp
CAAAATACATTTTTAGGCAATTTAACGTCACCGGCAGCATTtcaaatacc
ggaataccgTACATTTTTCTTCAATATGCCGGACAGAAAAAAGGCCTATA
CTGTGTCACCGTAAACCTTGAAACCCCCTATTGTATTATGTGTCAACTAT
GTGGATACTGTCAATAAGAAAGTACAAAAATTGACTGTTTTTGCATATTC
TTTACACCCCTGActagttttgaaaattacagACTAATAAATGTCTACTA
GGCCCTACATTGATACCTGTGGTTAAGTTAAAAGGTCCATCTTGGGACCC
ATGCTGGTCCCGTAACTGCAAAAGGTATACTTAAAGAGATATATATTTAA
ACTGCGGTCCTAAAAAAAacgacaatgaattttcctaactgACAGCTAGT
CACACTAAGAAAtaaagctttcagaaaaaacaacatcagtcatcatcatc
tacaggatgtatttgcaacaacaaggatgagagttacctgaatcaagttc
aagatccaAAGACAGTCAATTAAGatttgaaatgaaacaaaatgattGAT
TGctaaacgtgcagcagccaatcaaccaaccaaaatttgtaattcaattc
ccgagacagggCTTCAATTTTTTAGACCTTGATTATACgctaaagcaaaa
ataattctgcacatgtaaatgggccATTGTTTGatgtccggcaaaatttc
cgagAATAGCCTATctggcagtgcgcggatcttgTTGGGTTCTGTCTccc
ctgtagatctttttcttgggaagttgatcttcaaattagttttcaaggtt
ggcttggctcaaatttttccATCTACAGTATGGCTCAAATTCTAGGCAAT
TTctcattgtttttg
Run BLAST on NCBI

transcript from alignment at sc0000241:109171..110035

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00016557 ID=TCONS_00016557|Name=TCONS_00016557|organism=Clytia hemisphaerica|type=transcript|length=865bp|location=Sequence derived from alignment at sc0000241:109171..110035 (Clytia hemisphaerica)
caaaaacaatgagAAATTGCCTAGAATTTGAGCCATACTGTAGATggaaa
aatttgagccaagccaaccttgaaaactaatttgaagatcaacttcccaa
gaaaaagatctacaggggAGACAGAACCCAAcaagatccgcgcactgcca
gATAGGCTATTctcggaaattttgccggacatCAAACAATggcccattta
catgtgcagaattatttttgctttagcGTATAATCAAGGTCTAAAAAATT
GAAGccctgtctcgggaattgaattacaaattttggttggttgattggct
gctgcacgtttagCAATCaatcattttgtttcatttcaaatCTTAATTGA
CTGTCTTtggatcttgaacttgattcaggtaactctcatccttgttgttg
caaatacatcctgtagatgatgatgactgatgttgttttttctgaaagct
ttaTTTCTTAGTGTGACTAGCTGTcagttaggaaaattcattgtcgtTTT
TTTTAGGACCGCAGTTTAAATATATATCTCTTTAAGTATACCTTTTGCAG
TTACGGGACCAGCATGGGTCCCAAGATGGACCTTTTAACTTAACCACAGG
TATCAATGTAGGGCCTAGTAGACATTTATTAGTctgtaattttcaaaact
agTCAGGGGTGTAAAGAATATGCAAAAACAGTCAATTTTTGTACTTTCTT
ATTGACAGTATCCACATAGTTGACACATAATACAATAGGGGGTTTCAAGG
TTTACGGTGACACAGTATAGGCCTTTTTTCTGTCCGGCATATTGAAGAAA
AATGTAcggtattccggtatttgaAATGCTGCCGGTGACGTTAAATTGCC
TAAAAATGTATTTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009251XLOC_009251Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016557-exon-sc0000241-1491911889:109171..110035TCONS_00016557-exon-sc0000241-1491911889:109171..110035Clytia hemisphaericaexon
TCONS_00016557-exon-sc0000241-1510915933:109171..110035TCONS_00016557-exon-sc0000241-1510915933:109171..110035Clytia hemisphaericaexon
TCONS_00016557-exon-sc0000241-1575043694:109171..110035TCONS_00016557-exon-sc0000241-1575043694:109171..110035Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000241supercontigsc0000241:109171..110035 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.23432	2.34241	6.25335	6.58076	2.12221	2.03605	1.36328	1.5133	1.10632	2.56892	2.23742	1.98724	2.24162	2.61817	0.984265	0.869528	1.08494	1.29547	2.16876	1.47045	2.01619	2.87506	0.737412	0.780101	2.60282	1.51782	2.23259	2.09392	1.84201	1.39154
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00016557 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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