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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00016561 ID=TCONS_00016561|Name=TCONS_00016561|organism=Clytia hemisphaerica|type=transcript|length=701bp
TTTGTATCCGTCGAGAGATCATCAAAATTGATTGATAATTTTTCCATTAA
ATTAATGAGGATTTTGTTTGTCACTTCCACATCAACCATAGAGTTGTGCA
ATCCTGTAGCCTCAATATTCAAATGCTCTGCTACGTCTTTAAGCCTGTGA
CGTGCTAGTTCAGGTTTAGGATAAGCAGCCCTACTCATTTTAAGAGTATC
AAGAAGTTTGAAGTCCATCTCCTTCAGTAAATCAATCCAGGGCTTTCTTT
CGTCTTCATTTTTTCCGAGCCTGGTAAAAGCTGCAGCTAGAAACTTCCAA
TCAAAACGTACATTATGTCCAAAGACTAACTTGGCACCTTCGAAAAACTT
CAATATTTCTTCAGCATGTTCGTGAAACGGTTTCTgttttgccaagaaat
caggGTGAAGATTGTGAATCTCATATGCTTTTGATTGAAGCTGATATTCA
CGATCGAGCTCAGGATTGATGAGAATGTCAAGTTGTTCTTTCCGCTCTGT
AGAGAAAACTTTGATCATTGAAAGTTGCACAATCCTGTCATTTTGAGAAT
CCAATCCAGTTGTCTCTGTATCAAAAACAATGTATGGAAAACCATCTTCA
GTTTCAACCTCTTGGCAATCGTTTAGTGGTCGTTTTTGCCCAGCTTGATG
TTGGATAAAATTCATGGAAGTAGATTGATTCGCCATGTTTGCTATTATTC
A Run BLAST on NCBI protein sequence of TCONS_00016561-protein >TCONS_00016561-protein ID=TCONS_00016561-protein|Name=TCONS_00016561-protein|organism=Clytia hemisphaerica|type=polypeptide|length=228bp
MANQSTSMNFIQHQAGQKRPLNDCQEVETEDGFPYIVFDTETTGLDSQND
RIVQLSMIKVFSTERKEQLDILINPELDREYQLQSKAYEIHNLHPDFLAK
QKPFHEHAEEILKFFEGAKLVFGHNVRFDWKFLAAAFTRLGKNEDERKPW
IDLLKEMDFKLLDTLKMSRAAYPKPELARHRLKDVAEHLNIEATGLHNSM
VDVEVTNKILINLMEKLSINFDDLSTDT Run BLAST on NCBI transcript from alignment at sc0000241:221029..221729 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00016561 ID=TCONS_00016561|Name=TCONS_00016561|organism=Clytia hemisphaerica|type=transcript|length=701bp|location=Sequence derived from alignment at sc0000241:221029..221729 (Clytia hemisphaerica)
TGAATAATAGCAAACATGGCGAATCAATCTACTTCCATGAATTTTATCCA
ACATCAAGCTGGGCAAAAACGACCACTAAACGATTGCCAAGAGGTTGAAA
CTGAAGATGGTTTTCCATACATTGTTTTTGATACAGAGACAACTGGATTG
GATTCTCAAAATGACAGGATTGTGCAACTTTCAATGATCAAAGTTTTCTC
TACAGAGCGGAAAGAACAACTTGACATTCTCATCAATCCTGAGCTCGATC
GTGAATATCAGCTTCAATCAAAAGCATATGAGATTCACAATCTTCACcct
gatttcttggcaaaacAGAAACCGTTTCACGAACATGCTGAAGAAATATT
GAAGTTTTTCGAAGGTGCCAAGTTAGTCTTTGGACATAATGTACGTTTTG
ATTGGAAGTTTCTAGCTGCAGCTTTTACCAGGCTCGGAAAAAATGAAGAC
GAAAGAAAGCCCTGGATTGATTTACTGAAGGAGATGGACTTCAAACTTCT
TGATACTCTTAAAATGAGTAGGGCTGCTTATCCTAAACCTGAACTAGCAC
GTCACAGGCTTAAAGACGTAGCAGAGCATTTGAATATTGAGGCTACAGGA
TTGCACAACTCTATGGTTGATGTGGAAGTGACAAACAAAATCCTCATTAA
TTTAATGGAAAAATTATCAATCAATTTTGATGATCTCTCGACGGATACAA
A Coding sequence (CDS) from alignment at sc0000241:221029..221729 >TCONS_00016561 ID=TCONS_00016561|Name=TCONS_00016561|organism=Clytia hemisphaerica|type=CDS|length=684bp|location=Sequence derived from alignment at sc0000241:221029..221729 (Clytia hemisphaerica)
ATGGCGAATCAATCTACTTCCATGAATTTTATCCAACATCAAGCTGGGCA
AAAACGACCACTAAACGATTGCCAAGAGGTTGAAACTGAAGATGGTTTTC
CATACATTGTTTTTGATACAGAGACAACTGGATTGGATTCTCAAAATGAC
AGGATTGTGCAACTTTCAATGATCAAAGTTTTCTCTACAGAGCGGAAAGA
ACAACTTGACATTCTCATCAATCCTGAGCTCGATCGTGAATATCAGCTTC
AATCAAAAGCATATGAGATTCACAATCTTCACcctgatttcttggcaaaa
cAGAAACCGTTTCACGAACATGCTGAAGAAATATTGAAGTTTTTCGAAGG
TGCCAAGTTAGTCTTTGGACATAATGTACGTTTTGATTGGAAGTTTCTAG
CTGCAGCTTTTACCAGGCTCGGAAAAAATGAAGACGAAAGAAAGCCCTGG
ATTGATTTACTGAAGGAGATGGACTTCAAACTTCTTGATACTCTTAAAAT
GAGTAGGGCTGCTTATCCTAAACCTGAACTAGCACGTCACAGGCTTAAAG
ACGTAGCAGAGCATTTGAATATTGAGGCTACAGGATTGCACAACTCTATG
GTTGATGTGGAAGTGACAAACAAAATCCTCATTAATTTAATGGAAAAATT
ATCAATCAATTTTGATGATCTCTCGACGGATACA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00016561-exon-sc0000241-1491911889:221029..221729 | TCONS_00016561-exon-sc0000241-1491911889:221029..221729 | Clytia hemisphaerica | exon |
| TCONS_00016561-exon-sc0000241-1510915933:221029..221729 | TCONS_00016561-exon-sc0000241-1510915933:221029..221729 | Clytia hemisphaerica | exon |
| TCONS_00016561-exon-sc0000241-1575043694:221029..221729 | TCONS_00016561-exon-sc0000241-1575043694:221029..221729 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000241 | supercontig | sc0000241:221029..221729 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR013520 | Exonuclease_RNaseT/DNA_pol3 |
| IPR012337 | RNaseH-like_dom |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
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