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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00016563 ID=TCONS_00016563|Name=TCONS_00016563|organism=Clytia hemisphaerica|type=transcript|length=1998bp
GGTGGGAACGTAAAATCATCCAATTCGCACGAGCTTTCTCTCTCCGTGCA
CGCGAGATCTGCTTTTTACGGGTGTTCCGCCGGCGAGAAGTTTCTCCTTG
GATTGGTGCGCGAGGTGGTCGTGAAGAGTTTATAACTTCAGGTAATCTTG
ATCTCAAAATCTTCCAATTCGATTTAGCTCGAATCTTTTTCGCATTTTTA
CGTAAGTCTAAGTCAGTCTCTGCATTTATTGTAACTGGAAAAGCGACTCG
GCCTGCGAAATTGCTAATGATGTAATCATTTCTTTCATTGCTCAAATCAG
AGATGCTTTTTCGTCGGCCATCGTTCGATGTGATATGAAAAATTTCTCCA
TGTTTCTCAACttcacttttaactttcaaCTCGTTTGAATTGAAGAAAAT
AGAGCTTTGAGAACATTTGAGTTTAAGGGGATCTTTCTCGAGCACTTCTG
CGCATGTGCGAATAGTAGCTCTCATTTGAAGTGTTTCAACATTGTTATCA
TGCTGGTCTAAATCTTGTAAAATGTTGGTTAAAGTCTCAAACCGTTCAAG
CTGGTTGACAATCTGATGTTTTTGTGATTTCAATGCCGATACTTTGGTTT
GGCAAACATCTTCCAAACGTTTATGTAATTTCTTCTCATGTTCTTTGATA
GCTGAGATAATACGCCCCATGCTTTCACTGATTTCAGCATACGTAACATT
AGCTTGTTCTTTTAATGTTTTCTTAGAGTGTTGTAAATCCATTAAAGCGA
GTTGTAGATTTGGTGAACGACTTTTAAATTCGTATAATTGTCGTCGCATC
TCGTCCTTCGCTTTCTGGGCGGCATTGGCGGTTGGGATACATTGATGGTT
TGTACCACGGTGAAACAAACTGGCACATTTTTTGCATATACATTTTTGAC
AAGGCACACAGAAGGTGTTTAATAATTCTTTCTCGTGGTCAACACAATAA
TAACGTTTCTTAATCAAGCTCGATACATCTGTACTACAATCGATATCTCG
TACACGATGTCCTTTAGTATACTTGACAACTTGGTGCGCATTTGCACAAT
TGCAACATAATAAATCTTGGCAAGTATCACAATAGTAATCAGCTTCGATA
TCAGACTGACAAACAGCACATAATAGATCGTCCGTACTGTTATCTCCACC
ATGTTCTATTTGTCTCAATGTCATAAAATTCGGACAAAACAATTCCTCTT
CATCTCCACTCAAGCGAATTTCTGTCTCACAGACTGGACATTTAAAGAAA
GAACCATTACTAGCCTCGACAAACATGGCAACACAATGTCTACAAAGCGT
GTGACCACAACTCAATAAAATGGGCGAATCAAACTCTTTCGAGCAACCAG
GACATTTGGGCAGATTCACTGGGCGCTTTGGTGGTTTCTCAGTACACTGA
TGGCGGATCTTTTTACGACAATTCTCGTTATGTTTGACGCGAACTCGAGA
GTTTGACTTTGAGCGTTCGTTACTCGGTACAACTGcatgttttgagcatt
ttttacGACTTTTACGAGACTCGTCACAACCAGGTTTCGGTTTCGATTGA
AATAATTCTGAATTATCGGTACTTAAAATGGTTGCGAGATTCTTGTGAGA
GACAGCTGGACTCAGTATCGAGATCATTCGTTTACGAAAGTTTGTTTTCT
CCTCGGTTTCTTCATTATCAGACAAGCAGCATCCGCATTTACGAGGTTTC
GAGGATGATCGTGTATGTCTACGACATTTTTCAGTTTCATCGTCACTTGA
TGTTAACTTACGatacttttttgaaacattacgACGAGATTTTGAGCATG
TTTCGTGATTACGCGTCATTTCTGTACAATGTTCTGTTAAAAAAACATCA
GCTTTTTACCATGCTGGCTACCATGTGGAAGATCATTTGCTTTCGACGTA
AGAGCAACAGATTCGATCGTTCTTTCTTGCAGCCGATGTTCTTGATTGAC
ATGGAATTTTGCATCAAATTATATCTTTCCAGAAAACAAATCTTCAAA Run BLAST on NCBI protein sequence of TCONS_00016563-protein >TCONS_00016563-protein ID=TCONS_00016563-protein|Name=TCONS_00016563-protein|organism=Clytia hemisphaerica|type=polypeptide|length=606bp
MTRNHETCSKSRRNVSKKYRKLTSSDDETEKCRRHTRSSSKPRKCGCCLS
DNEETEEKTNFRKRMISILSPAVSHKNLATILSTDNSELFQSKPKPGCDE
SRKSRKKCSKHAVVPSNERSKSNSRVRVKHNENCRKKIRHQCTEKPPKRP
VNLPKCPGCSKEFDSPILLSCGHTLCRHCVAMFVEASNGSFFKCPVCETE
IRLSGDEEELFCPNFMTLRQIEHGGDNSTDDLLCAVCQSDIEADYYCDTC
QDLLCCNCANAHQVVKYTKGHRVRDIDCSTDVSSLIKKRYYCVDHEKELL
NTFCVPCQKCICKKCASLFHRGTNHQCIPTANAAQKAKDEMRRQLYEFKS
RSPNLQLALMDLQHSKKTLKEQANVTYAEISESMGRIISAIKEHEKKLHK
RLEDVCQTKVSALKSQKHQIVNQLERFETLTNILQDLDQHDNNVETLQMR
ATIRTCAEVLEKDPLKLKCSQSSIFFNSNELKVKSEVEKHGEIFHITSND
GRRKSISDLSNERNDYIISNFAGRVAFPVTINAETDLDLRKNAKKIRAKS
NWKILRSRLPEVINSSRPPRAPIQGETSRRRNTRKKQISRARREKARANW
MILRSH Run BLAST on NCBI transcript from alignment at sc0000241:232190..234187 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00016563 ID=TCONS_00016563|Name=TCONS_00016563|organism=Clytia hemisphaerica|type=transcript|length=1998bp|location=Sequence derived from alignment at sc0000241:232190..234187 (Clytia hemisphaerica)
TTTGAAGATTTGTTTTCTGGAAAGATATAATTTGATGCAAAATTCCATGT
CAATCAAGAACATCGGCTGCAAGAAAGAACGATCGAATCTGTTGCTCTTA
CGTCGAAAGCAAATGATCTTCCACATGGTAGCCAGCATGGTAAAAAGCTG
ATGTTTTTTTAACAGAACATTGTACAGAAATGACGCGTAATCACGAAACA
TGCTCAAAATCTCGTcgtaatgtttcaaaaaagtatCGTAAGTTAACATC
AAGTGACGATGAAACTGAAAAATGTCGTAGACATACACGATCATCCTCGA
AACCTCGTAAATGCGGATGCTGCTTGTCTGATAATGAAGAAACCGAGGAG
AAAACAAACTTTCGTAAACGAATGATCTCGATACTGAGTCCAGCTGTCTC
TCACAAGAATCTCGCAACCATTTTAAGTACCGATAATTCAGAATTATTTC
AATCGAAACCGAAACCTGGTTGTGACGAGTCTCGTAAAAGTCgtaaaaaa
tgctcaaaacatgCAGTTGTACCGAGTAACGAACGCTCAAAGTCAAACTC
TCGAGTTCGCGTCAAACATAACGAGAATTGTCGTAAAAAGATCCGCCATC
AGTGTACTGAGAAACCACCAAAGCGCCCAGTGAATCTGCCCAAATGTCCT
GGTTGCTCGAAAGAGTTTGATTCGCCCATTTTATTGAGTTGTGGTCACAC
GCTTTGTAGACATTGTGTTGCCATGTTTGTCGAGGCTAGTAATGGTTCTT
TCTTTAAATGTCCAGTCTGTGAGACAGAAATTCGCTTGAGTGGAGATGAA
GAGGAATTGTTTTGTCCGAATTTTATGACATTGAGACAAATAGAACATGG
TGGAGATAACAGTACGGACGATCTATTATGTGCTGTTTGTCAGTCTGATA
TCGAAGCTGATTACTATTGTGATACTTGCCAAGATTTATTATGTTGCAAT
TGTGCAAATGCGCACCAAGTTGTCAAGTATACTAAAGGACATCGTGTACG
AGATATCGATTGTAGTACAGATGTATCGAGCTTGATTAAGAAACGTTATT
ATTGTGTTGACCACGAGAAAGAATTATTAAACACCTTCTGTGTGCCTTGT
CAAAAATGTATATGCAAAAAATGTGCCAGTTTGTTTCACCGTGGTACAAA
CCATCAATGTATCCCAACCGCCAATGCCGCCCAGAAAGCGAAGGACGAGA
TGCGACGACAATTATACGAATTTAAAAGTCGTTCACCAAATCTACAACTC
GCTTTAATGGATTTACAACACTCTAAGAAAACATTAAAAGAACAAGCTAA
TGTTACGTATGCTGAAATCAGTGAAAGCATGGGGCGTATTATCTCAGCTA
TCAAAGAACATGAGAAGAAATTACATAAACGTTTGGAAGATGTTTGCCAA
ACCAAAGTATCGGCATTGAAATCACAAAAACATCAGATTGTCAACCAGCT
TGAACGGTTTGAGACTTTAACCAACATTTTACAAGATTTAGACCAGCATG
ATAACAATGTTGAAACACTTCAAATGAGAGCTACTATTCGCACATGCGCA
GAAGTGCTCGAGAAAGATCCCCTTAAACTCAAATGTTCTCAAAGCTCTAT
TTTCTTCAATTCAAACGAGttgaaagttaaaagtgaaGTTGAGAAACATG
GAGAAATTTTTCATATCACATCGAACGATGGCCGACGAAAAAGCATCTCT
GATTTGAGCAATGAAAGAAATGATTACATCATTAGCAATTTCGCAGGCCG
AGTCGCTTTTCCAGTTACAATAAATGCAGAGACTGACTTAGACTTACGTA
AAAATGCGAAAAAGATTCGAGCTAAATCGAATTGGAAGATTTTGAGATCA
AGATTACCTGAAGTTATAAACTCTTCACGACCACCTCGCGCACCAATCCA
AGGAGAAACTTCTCGCCGGCGGAACACCCGTAAAAAGCAGATCTCGCGTG
CACGGAGAGAGAAAGCTCGTGCGAATTGGATGATTTTACGTTCCCACC Coding sequence (CDS) from alignment at sc0000241:232190..234187 >TCONS_00016563 ID=TCONS_00016563|Name=TCONS_00016563|organism=Clytia hemisphaerica|type=CDS|length=1818bp|location=Sequence derived from alignment at sc0000241:232190..234187 (Clytia hemisphaerica)
ATGACGCGTAATCACGAAACATGCTCAAAATCTCGTcgtaatgtttcaaa
aaagtatCGTAAGTTAACATCAAGTGACGATGAAACTGAAAAATGTCGTA
GACATACACGATCATCCTCGAAACCTCGTAAATGCGGATGCTGCTTGTCT
GATAATGAAGAAACCGAGGAGAAAACAAACTTTCGTAAACGAATGATCTC
GATACTGAGTCCAGCTGTCTCTCACAAGAATCTCGCAACCATTTTAAGTA
CCGATAATTCAGAATTATTTCAATCGAAACCGAAACCTGGTTGTGACGAG
TCTCGTAAAAGTCgtaaaaaatgctcaaaacatgCAGTTGTACCGAGTAA
CGAACGCTCAAAGTCAAACTCTCGAGTTCGCGTCAAACATAACGAGAATT
GTCGTAAAAAGATCCGCCATCAGTGTACTGAGAAACCACCAAAGCGCCCA
GTGAATCTGCCCAAATGTCCTGGTTGCTCGAAAGAGTTTGATTCGCCCAT
TTTATTGAGTTGTGGTCACACGCTTTGTAGACATTGTGTTGCCATGTTTG
TCGAGGCTAGTAATGGTTCTTTCTTTAAATGTCCAGTCTGTGAGACAGAA
ATTCGCTTGAGTGGAGATGAAGAGGAATTGTTTTGTCCGAATTTTATGAC
ATTGAGACAAATAGAACATGGTGGAGATAACAGTACGGACGATCTATTAT
GTGCTGTTTGTCAGTCTGATATCGAAGCTGATTACTATTGTGATACTTGC
CAAGATTTATTATGTTGCAATTGTGCAAATGCGCACCAAGTTGTCAAGTA
TACTAAAGGACATCGTGTACGAGATATCGATTGTAGTACAGATGTATCGA
GCTTGATTAAGAAACGTTATTATTGTGTTGACCACGAGAAAGAATTATTA
AACACCTTCTGTGTGCCTTGTCAAAAATGTATATGCAAAAAATGTGCCAG
TTTGTTTCACCGTGGTACAAACCATCAATGTATCCCAACCGCCAATGCCG
CCCAGAAAGCGAAGGACGAGATGCGACGACAATTATACGAATTTAAAAGT
CGTTCACCAAATCTACAACTCGCTTTAATGGATTTACAACACTCTAAGAA
AACATTAAAAGAACAAGCTAATGTTACGTATGCTGAAATCAGTGAAAGCA
TGGGGCGTATTATCTCAGCTATCAAAGAACATGAGAAGAAATTACATAAA
CGTTTGGAAGATGTTTGCCAAACCAAAGTATCGGCATTGAAATCACAAAA
ACATCAGATTGTCAACCAGCTTGAACGGTTTGAGACTTTAACCAACATTT
TACAAGATTTAGACCAGCATGATAACAATGTTGAAACACTTCAAATGAGA
GCTACTATTCGCACATGCGCAGAAGTGCTCGAGAAAGATCCCCTTAAACT
CAAATGTTCTCAAAGCTCTATTTTCTTCAATTCAAACGAGttgaaagtta
aaagtgaaGTTGAGAAACATGGAGAAATTTTTCATATCACATCGAACGAT
GGCCGACGAAAAAGCATCTCTGATTTGAGCAATGAAAGAAATGATTACAT
CATTAGCAATTTCGCAGGCCGAGTCGCTTTTCCAGTTACAATAAATGCAG
AGACTGACTTAGACTTACGTAAAAATGCGAAAAAGATTCGAGCTAAATCG
AATTGGAAGATTTTGAGATCAAGATTACCTGAAGTTATAAACTCTTCACG
ACCACCTCGCGCACCAATCCAAGGAGAAACTTCTCGCCGGCGGAACACCC
GTAAAAAGCAGATCTCGCGTGCACGGAGAGAGAAAGCTCGTGCGAATTGG
ATGATTTTACGTTCCCAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00016563-exon-sc0000241-1491911889:232190..234187 | TCONS_00016563-exon-sc0000241-1491911889:232190..234187 | Clytia hemisphaerica | exon |
| TCONS_00016563-exon-sc0000241-1510915933:232190..234187 | TCONS_00016563-exon-sc0000241-1510915933:232190..234187 | Clytia hemisphaerica | exon |
| TCONS_00016563-exon-sc0000241-1575043694:232190..234187 | TCONS_00016563-exon-sc0000241-1575043694:232190..234187 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000241 | supercontig | sc0000241:232190..234187 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005622 | intracellular |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008270 | zinc ion binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| cellular_component |
GO:0005622 |
intracellular |
| molecular_function |
GO:0008270 |
zinc ion binding |
Blast
The following BLAST results are available for this feature:
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