TCONS_00016565 (transcript) - C. hemisphaerica

Overview
NameTCONS_00016565
Unique NameTCONS_00016565
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length293

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00016565 ID=TCONS_00016565|Name=TCONS_00016565|organism=Clytia hemisphaerica|type=transcript|length=293bp
ctaaaaagggccaatcccgtcacaccgtaaaagtacaaacccccctttAT
TGGTAAGATTAACGTGAAAAGATGGGCTGTTTTAAGCATCAACAGCAACA
AAACCAAAAACCGTACTAGAAAATTAAGGATTGGATTTCGTCGCTACATC
ATCTCACTatggcgctgtggcttagcggttaaagcgcctgtctagtaaac
aggagatccccggttcaaatccgggcagtgcctctcAGTTTTTTCGAGGT
AGTTGCACTGAAAAAGCATAATATACTGAAGGATATGTTTTTC
Run BLAST on NCBI

transcript from alignment at sc0000241:267907..268199

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00016565 ID=TCONS_00016565|Name=TCONS_00016565|organism=Clytia hemisphaerica|type=transcript|length=293bp|location=Sequence derived from alignment at sc0000241:267907..268199 (Clytia hemisphaerica)
GAAAAACATATCCTTCAGTATATTATGCTTTTTCAGTGCAACTACCTCGA
AAAAACTgagaggcactgcccggatttgaaccggggatctcctgtttact
agacaggcgctttaaccgctaagccacagcgccatAGTGAGATGATGTAG
CGACGAAATCCAATCCTTAATTTTCTAGTACGGTTTTTGGTTTTGTTGCT
GTTGATGCTTAAAACAGCCCATCTTTTCACGTTAATCTTACCAATaaagg
ggggtttgtacttttacggtgtgacgggattggccctttttag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009259XLOC_009259Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016565-exon-sc0000241-1491911889:267907..268199TCONS_00016565-exon-sc0000241-1491911889:267907..268199Clytia hemisphaericaexon
TCONS_00016565-exon-sc0000241-1510915933:267907..268199TCONS_00016565-exon-sc0000241-1510915933:267907..268199Clytia hemisphaericaexon
TCONS_00016565-exon-sc0000241-1575043694:267907..268199TCONS_00016565-exon-sc0000241-1575043694:267907..268199Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000241supercontigsc0000241:267907..268199 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.476795	0.46647	1.73684	1.05947	1.65434	1.56447	0.356501	2.21384	0	0.843122	2.24752	6.1193	3.59014	0.770089	0.633602	0.975274	2.23821	10.9306	0.407147	0.859367	0.965659	0	0.452121	2.82455	1.4669	1.27233	0.539099	0.523469
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00016565 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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