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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00016568 ID=TCONS_00016568|Name=TCONS_00016568|organism=Clytia hemisphaerica|type=transcript|length=1607bp
tagccctttaaaaaaacaacaaagaaatattacaaaacaaaaaacaactg
aTATCACGATCAATATCAATACCCCATCCCAACATTAAGTTAAAGTTCTT
TTTAGCGTTTTTGGCTTCTTTAGGTATGAGGGTCAGTAGACTCCCCGCAA
CCTCGACAAGACCAACAAAGGTAACATTTTGATTGATGACGTGTATATCT
AGCGTTCGAATTTAGTCACTCGGACCCTTAGTAGGACTGTTATCGGCTTA
TTATTTCCATTTTTACAACTGAAATTAGATTTCATCATCTTTACGACCGA
GGGGTTTTAAAGGTCCATAAAACTCCGACTTTGCAGTTCTGAATAACATC
AAAATACATCAATTGGCTTTCAATCCACATAAAATAGAGTTAATTCTctc
gaaaaccatttttatgaACAGAGGATCAAGATCATCGTCCTCATGTATCA
TTATATTTCCATTTTGAATAATCGGATCGTCACCGATGATATATCTGCTT
CGAACGATATTGATAATCTTATTCTTACCGAGAACCGTTAATGGCCGGTA
ATCTGTATATCTTattctttcagaaaatataggTAGATGAATTGCGATTA
TTTTATCGTTCTCTTCAGCTTTTAATGACTCTAAAAATTCATATCCTTTT
ATCGAAACAGAACTTCCATCAAATGAATACAACTCAAACTTATGATAAAA
AAAAGGACTTTCAAGTACTTGGACTGTTGCATTAGCGTTGAACTCTGTCA
TAAGGTCGTTCCACAGATTGTAAATGTGAAAGGCGTTTATTGCACGTTTT
TTCCAAAAGTATAAACGGATTTTTTTAGAGGTTTGGCATtcaatatttat
atattttttatatcttcTTTGCCAGTCATAGTGAGGATTATTTAATTGGT
CCATCAAAATTTGGTGTAAATGTCGATTGAAGGTAATATAGTAGATGTGA
AGGAATGGAATCAAATAGATTGTATTTTGCTTTGGTAACCACTTCTGAAA
GAATCGATAGGGAGAGAGTCCGATAGACCATACCACGAGATCGACTTGTT
TACGGACAAAAAGATTTCTAGTTAACTCAAATACTTTAACATGTTTATCa
tcaaaagaaacttttttaagTGCAAAAGTCACAAAAAATAATGTTTGTTT
AATATCGTTGTTGTTATGAGGTATATTAAGTAAAACCTTTATCACTTCAT
TTTCGTCAGTCCGTGTTATTGCCTGAAATTCGCGTTCCAAAAATTCAGCG
TAATTTTCCATAGTTAAGCGAATTGAACGGCTTTGTATCGgagaaaatat
ccaaaaaatagAACAAGGTTTATCCAACAATGACTTTACTAAATACTTCA
ATTGTATGACAGAATCGTGAAAGTATTTTTCGAAATTGAAGTGTCGAAAT
TTGCTATGAAGCATATCGTACGGAATAATGGTGACATTCCGGACTTCCGT
ACACGGTAAAATCAAGTCTCCCAAAGCCATCGGTACTGATACAACCACAC
AACAGCAAAAAAAACACGATATAAAACCAAGCGTATATGACATTGTTGAT
TTTCACactttgattgaaattttaatgatatgaaaaacaactttttgctG
TCTGAAA Run BLAST on NCBI protein sequence of TCONS_00016568-protein >TCONS_00016568-protein ID=TCONS_00016568-protein|Name=TCONS_00016568-protein|organism=Clytia hemisphaerica|type=polypeptide|length=394bp
MSYTLGFISCFFCCCVVVSVPMALGDLILPCTEVRNVTIIPYDMLHSKFR
HFNFEKYFHDSVIQLKYLVKSLLDKPCSIFWIFSPIQSRSIRLTMENYAE
FLEREFQAITRTDENEVIKVLLNIPHNNNDIKQTLFFVTFALKKVSFDDK
HVKVFELTRNLFVRKQVDLVVWSIGLSPYRFFQKWLPKQNTIYLIPFLHI
YYITFNRHLHQILMDQLNNPHYDWQRRYKKYINIECQTSKKIRLYFWKKR
AINAFHIYNLWNDLMTEFNANATVQVLESPFFYHKFELYSFDGSSVSIKG
YEFLESLKAEENDKIIAIHLPIFSERIRYTDYRPLTVLGKNKIINIVRSR
YIIGDDPIIQNGNIMIHEDDDLDPLFIKMVFERINSILCGLKAN Run BLAST on NCBI transcript from alignment at sc0000241:391815..393421 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00016568 ID=TCONS_00016568|Name=TCONS_00016568|organism=Clytia hemisphaerica|type=transcript|length=1607bp|location=Sequence derived from alignment at sc0000241:391815..393421 (Clytia hemisphaerica)
TTTCAGACagcaaaaagttgtttttcatatcattaaaatttcaatcaaag
tGTGAAAATCAACAATGTCATATACGCTTGGTTTTATATCGTGTTTTTTT
TGCTGTTGTGTGGTTGTATCAGTACCGATGGCTTTGGGAGACTTGATTTT
ACCGTGTACGGAAGTCCGGAATGTCACCATTATTCCGTACGATATGCTTC
ATAGCAAATTTCGACACTTCAATTTCGAAAAATACTTTCACGATTCTGTC
ATACAATTGAAGTATTTAGTAAAGTCATTGTTGGATAAACCTTGTTctat
tttttggatattttctcCGATACAAAGCCGTTCAATTCGCTTAACTATGG
AAAATTACGCTGAATTTTTGGAACGCGAATTTCAGGCAATAACACGGACT
GACGAAAATGAAGTGATAAAGGTTTTACTTAATATACCTCATAACAACAA
CGATATTAAACAAACATTATTTTTTGTGACTTTTGCActtaaaaaagttt
cttttgatGATAAACATGTTAAAGTATTTGAGTTAACTAGAAATCTTTTT
GTCCGTAAACAAGTCGATCTCGTGGTATGGTCTATCGGACTCTCTCCCTA
TCGATTCTTTCAGAAGTGGTTACCAAAGCAAAATACAATCTATTTGATTC
CATTCCTTCACATCTACTATATTACCTTCAATCGACATTTACACCAAATT
TTGATGGACCAATTAAATAATCCTCACTATGACTGGCAAAgaagatataa
aaaatatataaatattgaATGCCAAACCTCTAAAAAAATCCGTTTATACT
TTTGGAAAAAACGTGCAATAAACGCCTTTCACATTTACAATCTGTGGAAC
GACCTTATGACAGAGTTCAACGCTAATGCAACAGTCCAAGTACTTGAAAG
TCCTTTTTTTTATCATAAGTTTGAGTTGTATTCATTTGATGGAAGTTCTG
TTTCGATAAAAGGATATGAATTTTTAGAGTCATTAAAAGCTGAAGAGAAC
GATAAAATAATCGCAATTCATCTAcctatattttctgaaagaatAAGATA
TACAGATTACCGGCCATTAACGGTTCTCGGTAAGAATAAGATTATCAATA
TCGTTCGAAGCAGATATATCATCGGTGACGATCCGATTATTCAAAATGGA
AATATAATGATACATGAGGACGATGATCTTGATCCTCTGTtcataaaaat
ggttttcgagAGAATTAACTCTATTTTATGTGGATTGAAAGCCAATTGAT
GTATTTTGATGTTATTCAGAACTGCAAAGTCGGAGTTTTATGGACCTTTA
AAACCCCTCGGTCGTAAAGATGATGAAATCTAATTTCAGTTGTAAAAATG
GAAATAATAAGCCGATAACAGTCCTACTAAGGGTCCGAGTGACTAAATTC
GAACGCTAGATATACACGTCATCAATCAAAATGTTACCTTTGTTGGTCTT
GTCGAGGTTGCGGGGAGTCTACTGACCCTCATACCTAAAGAAGCCAAAAA
CGCTAAAAAGAACTTTAACTTAATGTTGGGATGGGGTATTGATATTGATC
GTGATAtcagttgttttttgttttgtaatatttctttgttgtttttttaa
agggcta Coding sequence (CDS) from alignment at sc0000241:391815..393421 >TCONS_00016568 ID=TCONS_00016568|Name=TCONS_00016568|organism=Clytia hemisphaerica|type=CDS|length=1185bp|location=Sequence derived from alignment at sc0000241:391815..393421 (Clytia hemisphaerica)
ATGTCATATACGCTTGGTTTTATATCGTGTTTTTTTTGCTGTTGTGTGGT
TGTATCAGTACCGATGGCTTTGGGAGACTTGATTTTACCGTGTACGGAAG
TCCGGAATGTCACCATTATTCCGTACGATATGCTTCATAGCAAATTTCGA
CACTTCAATTTCGAAAAATACTTTCACGATTCTGTCATACAATTGAAGTA
TTTAGTAAAGTCATTGTTGGATAAACCTTGTTctattttttggatatttt
ctcCGATACAAAGCCGTTCAATTCGCTTAACTATGGAAAATTACGCTGAA
TTTTTGGAACGCGAATTTCAGGCAATAACACGGACTGACGAAAATGAAGT
GATAAAGGTTTTACTTAATATACCTCATAACAACAACGATATTAAACAAA
CATTATTTTTTGTGACTTTTGCActtaaaaaagtttcttttgatGATAAA
CATGTTAAAGTATTTGAGTTAACTAGAAATCTTTTTGTCCGTAAACAAGT
CGATCTCGTGGTATGGTCTATCGGACTCTCTCCCTATCGATTCTTTCAGA
AGTGGTTACCAAAGCAAAATACAATCTATTTGATTCCATTCCTTCACATC
TACTATATTACCTTCAATCGACATTTACACCAAATTTTGATGGACCAATT
AAATAATCCTCACTATGACTGGCAAAgaagatataaaaaatatataaata
ttgaATGCCAAACCTCTAAAAAAATCCGTTTATACTTTTGGAAAAAACGT
GCAATAAACGCCTTTCACATTTACAATCTGTGGAACGACCTTATGACAGA
GTTCAACGCTAATGCAACAGTCCAAGTACTTGAAAGTCCTTTTTTTTATC
ATAAGTTTGAGTTGTATTCATTTGATGGAAGTTCTGTTTCGATAAAAGGA
TATGAATTTTTAGAGTCATTAAAAGCTGAAGAGAACGATAAAATAATCGC
AATTCATCTAcctatattttctgaaagaatAAGATATACAGATTACCGGC
CATTAACGGTTCTCGGTAAGAATAAGATTATCAATATCGTTCGAAGCAGA
TATATCATCGGTGACGATCCGATTATTCAAAATGGAAATATAATGATACA
TGAGGACGATGATCTTGATCCTCTGTtcataaaaatggttttcgagAGAA
TTAACTCTATTTTATGTGGATTGAAAGCCAATTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00016568-exon-sc0000241-1491911889:391815..393421 | TCONS_00016568-exon-sc0000241-1491911889:391815..393421 | Clytia hemisphaerica | exon |
| TCONS_00016568-exon-sc0000241-1510915933:391815..393421 | TCONS_00016568-exon-sc0000241-1510915933:391815..393421 | Clytia hemisphaerica | exon |
| TCONS_00016568-exon-sc0000241-1575043694:391815..393421 | TCONS_00016568-exon-sc0000241-1575043694:391815..393421 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000241 | supercontig | sc0000241:391815..393421 . |
Blast
The following BLAST results are available for this feature:
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