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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00016583 ID=TCONS_00016583|Name=TCONS_00016583|organism=Clytia hemisphaerica|type=transcript|length=1559bp
tgttttactttttttacatCAGTTCTTGTGAAAAGTCTTTCTTACATTGT
TATACGAGATTCTGCATAATATCCCACTGTatttttttccaggaaaattt
cCAGAAAGCCTTGGTAATGCTTGATGCGTTCAATGCAGCTGAAACAGAAG
AAACTAATTCAGGAAATGATGACGacaatgatgaaataaatgtGAGCGAA
GGAGATGAGAAGAAAGAAAACGTAGGTGAGGATGGAGAAAGAAATGACTT
TTCTGATAGTGAAGATGACGATGATGTGGTTATTGAATCAGTTGAGGATA
TGGAAGAAAAGCAAGAATCATCACTGCAACGTGATCTTCATGATGTGATG
TTTGAAGCCAGTGAGGTATAAAAGTGCATGAAATACTTTTattgttgaaa
atttcaattgtgTTCTAGTTGGTTTTGAATTATTTTACTTACtaaaattg
attaatttgaaCAGTCAAAAGTCAAGGTTCAGTGTGTCTCGGTCATTCGA
ACCCAGTAACGTCGTTCGTCATTTGCACAAGTATTATGCAGAAGACTCAA
TTCCCtttcgaatatttctttttatccCCTTCATATATGAGAACTACCAT
TATTTGATACCACTTTTGAAGCATCCTTCCTCTAGAACTTATGTTTGACT
TCCAGCgagccaaaaaaaaacatagtgTAGTTTAACACGACCTTGTTAGA
ACTTATAAGCCTACGTCTAGCTTTGAAATAGTCAAGCTTCGTCTACGCTA
TTGACAATACCAGTTGTGTCCCGGGCGTATgagcttaaaaatcaatttag
aCTGGAATCCATACTAAAAAGAATGCAGATTTGCATCAGCAAGCTACTAT
AAGATTTACTAAATCTATATTCAAGAAACAAGATGAAATCTACTTGAAAG
ATAATACAATGCAATCTGAGTCTGGGATCATCATAAACAGTTCTATGTCA
CAAAgacatcaaaataaaacatttgagTTTTCTCATGAGAGGTCAAGAAG
TGACTCTAATTCGTCATCAAAATCATCCAGAAGAACAAATGCGTTGCTGG
ATTCATTGAATGCATCTTCCAAGAAATGATTATTTTTCATTGGACTACAG
ACACGCTCTTGTTTCATTATACAGATCGTATTGGACTGCAGATATGTTCC
ATAGTCCAGGACTATAAAAGGAAAGGAAACTTTCTTGCCTGTCGTATTTC
TTTTAGAAGATTTataagtttttaattattcaatcaTCTTTTAATCTGAA
ACTTACAAGTAATGGTgtgttgttttttcttcaaaaagtcatTTTGAAAC
ATCTTGCTCACCGCGAGTTTGCCATCCTTACCCAGATTTAGTCCCTTAgt
tatttcaaaacatttgattaGCTTTTGAATAAATTGAGATGAACCCTGAT
GTGATTCTCCTTGGAACTAGTATAGTAACGTTGTTAAATGTTTGCTTAGG
AGTAGGAGAGAATTTGTATTTTGTATACTTAAACATCTTTTTAGCTCAAA
AATTAAGTATATACAATTAGCTAGAcattttattaaagaaaaaagaaaat
ctatatCTG Run BLAST on NCBI transcript from alignment at sc0000243:302229..303787+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00016583 ID=TCONS_00016583|Name=TCONS_00016583|organism=Clytia hemisphaerica|type=transcript|length=1559bp|location=Sequence derived from alignment at sc0000243:302229..303787+ (Clytia hemisphaerica)
tgttttactttttttacatCAGTTCTTGTGAAAAGTCTTTCTTACATTGT
TATACGAGATTCTGCATAATATCCCACTGTatttttttccaggaaaattt
cCAGAAAGCCTTGGTAATGCTTGATGCGTTCAATGCAGCTGAAACAGAAG
AAACTAATTCAGGAAATGATGACGacaatgatgaaataaatgtGAGCGAA
GGAGATGAGAAGAAAGAAAACGTAGGTGAGGATGGAGAAAGAAATGACTT
TTCTGATAGTGAAGATGACGATGATGTGGTTATTGAATCAGTTGAGGATA
TGGAAGAAAAGCAAGAATCATCACTGCAACGTGATCTTCATGATGTGATG
TTTGAAGCCAGTGAGGTATAAAAGTGCATGAAATACTTTTattgttgaaa
atttcaattgtgTTCTAGTTGGTTTTGAATTATTTTACTTACtaaaattg
attaatttgaaCAGTCAAAAGTCAAGGTTCAGTGTGTCTCGGTCATTCGA
ACCCAGTAACGTCGTTCGTCATTTGCACAAGTATTATGCAGAAGACTCAA
TTCCCtttcgaatatttctttttatccCCTTCATATATGAGAACTACCAT
TATTTGATACCACTTTTGAAGCATCCTTCCTCTAGAACTTATGTTTGACT
TCCAGCgagccaaaaaaaaacatagtgTAGTTTAACACGACCTTGTTAGA
ACTTATAAGCCTACGTCTAGCTTTGAAATAGTCAAGCTTCGTCTACGCTA
TTGACAATACCAGTTGTGTCCCGGGCGTATgagcttaaaaatcaatttag
aCTGGAATCCATACTAAAAAGAATGCAGATTTGCATCAGCAAGCTACTAT
AAGATTTACTAAATCTATATTCAAGAAACAAGATGAAATCTACTTGAAAG
ATAATACAATGCAATCTGAGTCTGGGATCATCATAAACAGTTCTATGTCA
CAAAgacatcaaaataaaacatttgagTTTTCTCATGAGAGGTCAAGAAG
TGACTCTAATTCGTCATCAAAATCATCCAGAAGAACAAATGCGTTGCTGG
ATTCATTGAATGCATCTTCCAAGAAATGATTATTTTTCATTGGACTACAG
ACACGCTCTTGTTTCATTATACAGATCGTATTGGACTGCAGATATGTTCC
ATAGTCCAGGACTATAAAAGGAAAGGAAACTTTCTTGCCTGTCGTATTTC
TTTTAGAAGATTTataagtttttaattattcaatcaTCTTTTAATCTGAA
ACTTACAAGTAATGGTgtgttgttttttcttcaaaaagtcatTTTGAAAC
ATCTTGCTCACCGCGAGTTTGCCATCCTTACCCAGATTTAGTCCCTTAgt
tatttcaaaacatttgattaGCTTTTGAATAAATTGAGATGAACCCTGAT
GTGATTCTCCTTGGAACTAGTATAGTAACGTTGTTAAATGTTTGCTTAGG
AGTAGGAGAGAATTTGTATTTTGTATACTTAAACATCTTTTTAGCTCAAA
AATTAAGTATATACAATTAGCTAGAcattttattaaagaaaaaagaaaat
ctatatCTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00016583-exon-sc0000243-1491911889:302229..303787 | TCONS_00016583-exon-sc0000243-1491911889:302229..303787 | Clytia hemisphaerica | exon |
| TCONS_00016583-exon-sc0000243-1510915933:302229..303787 | TCONS_00016583-exon-sc0000243-1510915933:302229..303787 | Clytia hemisphaerica | exon |
| TCONS_00016583-exon-sc0000243-1575043694:302229..303787 | TCONS_00016583-exon-sc0000243-1575043694:302229..303787 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000243 | supercontig | sc0000243:302229..303787 + |
Blast
The following BLAST results are available for this feature:
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