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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00016587 ID=TCONS_00016587|Name=TCONS_00016587|organism=Clytia hemisphaerica|type=transcript|length=362bp
CTCAAACAAGAGGAACAAAAGTAGTCAATCAATCTTGAAAAAAGAGCACA
ATGATGAAACTAGCAAGTGTTTTGGTCTTTTTGGCCGTTGCATCTTCCAT
CGAAGCAGGTTATGTCAACCGAGTGATCATAAGATCGTACAGGTCGACTT
ATCTCCTTGTAAGGTCACCACCATTGAATATGCACCAAGCTAAACACGCA
TGCGCTAAATTTGGAGGTTTCTTGGCAACTATCAATAATCAACGAGAGCA
CCACTTTTTGGTtgccaaattacagtaagtAGAATACAAAATgcaaaaca
ttgaaaataaagattaaaaatcaatgtctttAGACAGGGTGCTAATTCTA
AATTGCCAGAGG Run BLAST on NCBI transcript from alignment at sc0000243:402984..404168+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00016587 ID=TCONS_00016587|Name=TCONS_00016587|organism=Clytia hemisphaerica|type=transcript|length=1185bp|location=Sequence derived from alignment at sc0000243:402984..404168+ (Clytia hemisphaerica)
CTCAAACAAGAGGAACAAAAGTAGTCAATCAATCTTGAAAAAAGGTAACC
attttattgatattttaaattattttgatgaaaagaaagTCTTAAATGTT
ACATGTTTCTAATGTTATCAGTCTTTCAACCTTCCATTATTAGTGCAAGC
TGTAAATAATAGTTGGGTTATCTTCACAGTgaattaataatttgatttca
agcttttttctttttcaattttttttttccgcaGAGCACAATGATGAAAC
TAGCAAGTGTTTTGGTCTTTTTGGCCGTTGCATCTTCCATCGAAGCAGGT
TATGTCAACCGAGGTAAGAAATCTAATTAATTTTACAATAATTTTATCGG
ACGTTGGTGGACCCTTTGGGAGGCTTTGGGAGCGGGTTAAATGGAAAAAG
AATCTACTTCGTATAAATTTTGGACACTCCACAGGAATTCTCCTATTCTA
TTTAACTAGTTTAGGTGTACAACTAGAAAGAACCTCTAGAAGAATCAGGC
CCAAATCACATATCAAGAAATTAGATTTATCGCATATAGAGACTTAGAAG
GGACCTTGATACATTCACGTACTTTTTGTGTCTAGCTGCCTATCAAGGTT
TGCATTTTGTGGTCAAGAGAACTTAACCGGCTTTCAGTGTTCAATGAATG
TCCATTGTACAGTGTGTCTGGGTTAAAACAGACCAAAATATGTATTCAAA
GAAACATCCTCGTTTATGCCAAATATGCAAATTTTATgaccaaattattt
ttatttgcttCCTCGAAGAATTACTTAGCCAATTTGCAAAtaggttttaa
tatttttgggGTCGACAAGATCAACAATGTTAGGGATTTCGATTGATATA
AATTCTGCTCGGCGTTTTCACAGACACGCAAAATGATTACTGTGAAATCG
TAATAAAATATTTCCaccaattttctttttcatcaaaaaccaACAGTGAT
CATAAGATCGTACAGGTCGACTTATCTCCTTGTAAGGTCACCACCATTGA
ATATGCACCAAGCTAAACACGCATGCGCTAAATTTGGAGGTTTCTTGGCA
ACTATCAATAATCAACGAGAGCACCACTTTTTGGTtgccaaattacagta
agtAGAATACAAAATgcaaaacattgaaaataaagattaaaaatcaatgt
ctttAGACAGGGTGCTAATTCTAAATTGCCAGAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00016587-exon-sc0000243-1491911889:402984..403027 | TCONS_00016587-exon-sc0000243-1491911889:402984..403027 | Clytia hemisphaerica | exon |
| TCONS_00016587-exon-sc0000243-1510915933:402984..403027 | TCONS_00016587-exon-sc0000243-1510915933:402984..403027 | Clytia hemisphaerica | exon |
| TCONS_00016587-exon-sc0000243-1575043694:402984..403027 | TCONS_00016587-exon-sc0000243-1575043694:402984..403027 | Clytia hemisphaerica | exon |
| TCONS_00016587-exon-sc0000243-1491911889:403218..403296 | TCONS_00016587-exon-sc0000243-1491911889:403218..403296 | Clytia hemisphaerica | exon |
| TCONS_00016587-exon-sc0000243-1510915933:403218..403296 | TCONS_00016587-exon-sc0000243-1510915933:403218..403296 | Clytia hemisphaerica | exon |
| TCONS_00016587-exon-sc0000243-1575043694:403218..403296 | TCONS_00016587-exon-sc0000243-1575043694:403218..403296 | Clytia hemisphaerica | exon |
| TCONS_00016587-exon-sc0000243-1491911889:403930..404168 | TCONS_00016587-exon-sc0000243-1491911889:403930..404168 | Clytia hemisphaerica | exon |
| TCONS_00016587-exon-sc0000243-1510915933:403930..404168 | TCONS_00016587-exon-sc0000243-1510915933:403930..404168 | Clytia hemisphaerica | exon |
| TCONS_00016587-exon-sc0000243-1575043694:403930..404168 | TCONS_00016587-exon-sc0000243-1575043694:403930..404168 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000243 | supercontig | sc0000243:402984..404168 + |
Blast
The following BLAST results are available for this feature:
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