TCONS_00016608 (transcript) - C. hemisphaerica

Overview
NameTCONS_00016608
Unique NameTCONS_00016608
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length164

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00016608 ID=TCONS_00016608|Name=TCONS_00016608|organism=Clytia hemisphaerica|type=transcript|length=164bp
GTCCAGTACGATGGTCACAATTATAATCATATGTTCAGCATTTCTTGTGT
TGACTTTCATCATTGTTGCTGTTTGCTATCGATTGCAGAAATACCCATAC
AAGCGATTCGACGAGGAAGATCGTCGTCCACCTTCAAGACTCCCAAACAT
TGCAGAAGACCTCC
Run BLAST on NCBI

transcript from alignment at sc0000243:277157..277715-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00016608 ID=TCONS_00016608|Name=TCONS_00016608|organism=Clytia hemisphaerica|type=transcript|length=559bp|location=Sequence derived from alignment at sc0000243:277157..277715- (Clytia hemisphaerica)
GTCCAGTACGATGGTCACAATTATAATCATATGTTCAGCATTTCTTGTGT
TGACTTTCATCATTGTTGCTGTTTGCTATCGATTGCAGAAATACCCATAC
AAGCGATTCGACGAGGAAGGTATGTTCTGTGATTTTAGAAAGATCTTTAA
GGGTATGATGTACACACTTCAGCATATTTCAAAGAGCCAAATTTTGGTTC
ATTAAAAAGATTCAAAAGGGAAATATAAAAAAACTCGTCGTGTACTCTCG
ACGGTTTCTTTATAGGAAATTGGAACCTAATTTTCACTCATCTTATTTTC
GCACTATGAGGTTACAAGCTTGGCGTTTTTCGCTATTGATTTTCGCGGTT
GACATACACTACGAAATCTTTTTTATTTCTCAGATTTTTGAGTTTAGGAT
TAATTTTCGCCGTACACACCCAAAAATGCCATAATTAAAAATCTAAATCG
TGTATTTTAAGCTAAAATCGTGTATTTATATAACACTTTCAAACCACAAA
TATTTATTCAACAGATCGTCGTCCACCTTCAAGACTCCCAAACATTGCAG
AAGACCTCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009282XLOC_009282Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016608-exon-sc0000243-1575043694:277597..277715TCONS_00016608-exon-sc0000243-1575043694:277597..277715Clytia hemisphaericaexon
TCONS_00016608-exon-sc0000243-1575043694:277157..277201TCONS_00016608-exon-sc0000243-1575043694:277157..277201Clytia hemisphaericaexon
TCONS_00016608-exon-sc0000243-1510915933:277597..277715TCONS_00016608-exon-sc0000243-1510915933:277597..277715Clytia hemisphaericaexon
TCONS_00016608-exon-sc0000243-1510915933:277157..277201TCONS_00016608-exon-sc0000243-1510915933:277157..277201Clytia hemisphaericaexon
TCONS_00016608-exon-sc0000243-1491911889:277597..277715TCONS_00016608-exon-sc0000243-1491911889:277597..277715Clytia hemisphaericaexon
TCONS_00016608-exon-sc0000243-1491911889:277157..277201TCONS_00016608-exon-sc0000243-1491911889:277157..277201Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000243supercontigsc0000243:277157..277715 -
Expression
No biomaterial libraries express this feature.
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00016608 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top