TCONS_00016618 (transcript) - C. hemisphaerica

Overview
NameTCONS_00016618
Unique NameTCONS_00016618
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length402

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00016618 ID=TCONS_00016618|Name=TCONS_00016618|organism=Clytia hemisphaerica|type=transcript|length=402bp
CACAAATTGACTATATTCTATGCCGAAAGCGCTGGAGAAATAGCATCCAC
GACTGCCAAGCCCACTCATCATCCGATCCTNGAATCTACTGATGGTCTAA
GAAATGCTTGGAAACTTGTCAAGGAGTTAAGCGGGAAGAAAAAAGCAGCA
TCTATCTCTATCAAAAGTGACGACCCAAAAAAGTCGTGGAAAGATCATTT
TGAAACCCTTCTAAACAATATTCCTGAAAACGTAAATGGTGAGGCCAATG
AAATTGATCCAGTGTTCCAATTAAACGAGGAAATCAATATCGATGACTTT
ACTCTTGAGGAAGTCAACAAGGCACTTAAACAgatgaaaaaaggaaaagc
tGCTGGACTTGATGGTTTACCTCTGGAATTCTGGAAACTTGATTCTCTCA
GT
Run BLAST on NCBI

protein sequence of TCONS_00016618-protein

>TCONS_00016618-protein ID=TCONS_00016618-protein|Name=TCONS_00016618-protein|organism=Clytia hemisphaerica|type=polypeptide|length=134bp
HKLTIFYAESAGEIASTTAKPTHHPIXESTDGLRNAWKLVKELSGKKKAA
SISIKSDDPKKSWKDHFETLLNNIPENVNGEANEIDPVFQLNEEINIDDF
TLEEVNKALKQMKKGKAAGLDGLPLEFWKLDSLS
Run BLAST on NCBI

transcript from alignment at sc0000243:8812..9213

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00016618 ID=TCONS_00016618|Name=TCONS_00016618|organism=Clytia hemisphaerica|type=transcript|length=402bp|location=Sequence derived from alignment at sc0000243:8812..9213 (Clytia hemisphaerica)
ACTGAGAGAATCAAGTTTCCAGAATTCCAGAGGTAAACCATCAAGTCCAG
CagcttttccttttttcatcTGTTTAAGTGCCTTGTTGACTTCCTCAAGA
GTAAAGTCATCGATATTGATTTCCTCGTTTAATTGGAACACTGGATCAAT
TTCATTGGCCTCACCATTTACGTTTTCAGGAATATTGTTTAGAAGGGTTT
CAAAATGATCTTTCCACGACTTTTTTGGGTCGTCACTTTTGATAGAGATA
GATGCTGCTTTTTTCTTCCCGCTTAACTCCTTGACAAGTTTCCAAGCATT
TCTTAGACCATCAGTAGATTCNAGGATCGGATGATGAGTGGGCTTGGCAG
TCGTGGATGCTATTTCTCCAGCGCTTTCGGCATAGAATATAGTCAATTTG
TG

Coding sequence (CDS) from alignment at sc0000243:8812..9213

>TCONS_00016618 ID=TCONS_00016618|Name=TCONS_00016618|organism=Clytia hemisphaerica|type=CDS|length=402bp|location=Sequence derived from alignment at sc0000243:8812..9213 (Clytia hemisphaerica)
ACTGAGAGAATCAAGTTTCCAGAATTCCAGAGGTAAACCATCAAGTCCAG
CagcttttccttttttcatcTGTTTAAGTGCCTTGTTGACTTCCTCAAGA
GTAAAGTCATCGATATTGATTTCCTCGTTTAATTGGAACACTGGATCAAT
TTCATTGGCCTCACCATTTACGTTTTCAGGAATATTGTTTAGAAGGGTTT
CAAAATGATCTTTCCACGACTTTTTTGGGTCGTCACTTTTGATAGAGATA
GATGCTGCTTTTTTCTTCCCGCTTAACTCCTTGACAAGTTTCCAAGCATT
TCTTAGACCATCAGTAGATTCNAGGATCGGATGATGAGTGGGCTTGGCAG
TCGTGGATGCTATTTCTCCAGCGCTTTCGGCATAGAATATAGTCAATTTG
TG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009288XLOC_009288Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016618-exon-sc0000243-1491911889:8812..9213TCONS_00016618-exon-sc0000243-1491911889:8812..9213Clytia hemisphaericaexon
TCONS_00016618-exon-sc0000243-1510915933:8812..9213TCONS_00016618-exon-sc0000243-1510915933:8812..9213Clytia hemisphaericaexon
TCONS_00016618-exon-sc0000243-1575043694:8812..9213TCONS_00016618-exon-sc0000243-1575043694:8812..9213Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016618-proteinTCONS_00016618-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000243supercontigsc0000243:8812..9213 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.28676	1.43405	1.66507	1.83263	0.49579	0.39178	0.236333	1.10626	0	0.383746	0.186237	1.22425	0.489018	0.126963	0.254741	0.560081	0	0.565761	0.390815	0.20448	0.17773	0	0.210767	0	0.652002	0.880705	0.252057	0.538004	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00016618 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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