TCONS_00016621 (transcript) - C. hemisphaerica

Overview
NameTCONS_00016621
Unique NameTCONS_00016621
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length239

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00016621 ID=TCONS_00016621|Name=TCONS_00016621|organism=Clytia hemisphaerica|type=transcript|length=239bp
NNAGACTTAAACCAACTCATGAATTGGGAACATGAATGGTCAATGGAGTT
CAACCCGGACAAATGTAAAGTTTTACGAATCACCAACAAGCGTAATACTA
TCATTCGACCATATTCAATGCACAACCAAGTACTCAAAGTTGTTGACTCA
GCGAAATATCTAGGTGTGTATATCCACAAAAAGCTCTCCTGGAATGTCCA
TAACGACTATACTGTTAAGAAAGCCAACCAAACTCGATG
Run BLAST on NCBI

transcript from alignment at sc0000243:20068..20306

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00016621 ID=TCONS_00016621|Name=TCONS_00016621|organism=Clytia hemisphaerica|type=transcript|length=239bp|location=Sequence derived from alignment at sc0000243:20068..20306 (Clytia hemisphaerica)
CATCGAGTTTGGTTGGCTTTCTTAACAGTATAGTCGTTATGGACATTCCA
GGAGAGCTTTTTGTGGATATACACACCTAGATATTTCGCTGAGTCAACAA
CTTTGAGTACTTGGTTGTGCATTGAATATGGTCGAATGATAGTATTACGC
TTGTTGGTGATTCGTAAAACTTTACATTTGTCCGGGTTGAACTCCATTGA
CCATTCATGTTCCCAATTCATGAGTTGGTTTAAGTCTNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009291XLOC_009291Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016621-exon-sc0000243-1491911889:20068..20306TCONS_00016621-exon-sc0000243-1491911889:20068..20306Clytia hemisphaericaexon
TCONS_00016621-exon-sc0000243-1510915933:20068..20306TCONS_00016621-exon-sc0000243-1510915933:20068..20306Clytia hemisphaericaexon
TCONS_00016621-exon-sc0000243-1575043694:20068..20306TCONS_00016621-exon-sc0000243-1575043694:20068..20306Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000243supercontigsc0000243:20068..20306 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.46739	4.68231	11.5256	10.8735	9.66677	9.74042	0.0305329	5.94518	3.47775	1.90814	2.71795	1.46171	1.50476	2.37924	0.885302	4.07222	4.62244	3.80989	4.5982	3.45479	6.19995	5.90381	2.54281	0	2.57004	1.75169	4.85947	5.59251	4.77402	8.98931
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00016621 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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