TCONS_00016628 (transcript) - C. hemisphaerica

Overview
NameTCONS_00016628
Unique NameTCONS_00016628
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length480

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00016628 ID=TCONS_00016628|Name=TCONS_00016628|organism=Clytia hemisphaerica|type=transcript|length=480bp
GTTTCCTTTTGAGAAGAGTTGATGCAAATGCACTGGGAAGTATGTAGATT
AGGTCTTTCCCCCAGATTGTACCTAATAACCCTAACAGAGGTTGACGGTT
CATTATTTGAATTAAGGCAAATATCACTTTAACAGGTATCTTTTTGGGCT
GTTTTGTACCTGTTGTGTTATTTgcgaaaagattttgaaaagcagctcTA
CCATACTTCCCAGTGTGTTTACTTACTTTCCTTTATGGGAACCTGCTTTG
TTTGAGGACAAATACATTCAAGGATTTACTTTACATTGTAGAGATACTAG
AACCAGTTGCTTTGTCTTCTATGTTTCAGTCAAGAGCTTGTCTCTGCTTT
CTCTGCAATGTAGGGTACTTCTTTTACATGATTGTTGTGTTTTCTAACtc
gcaaaaatcaaaatggataaTGCTACTTGCTTTGATCAAATTGAGGTATT
TTGTCACAAGCTTAGCCATTCCGATAacct
Run BLAST on NCBI

transcript from alignment at sc0000243:192796..193275

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00016628 ID=TCONS_00016628|Name=TCONS_00016628|organism=Clytia hemisphaerica|type=transcript|length=480bp|location=Sequence derived from alignment at sc0000243:192796..193275 (Clytia hemisphaerica)
aggtTATCGGAATGGCTAAGCTTGTGACAAAATACCTCAATTTGATCAAA
GCAAGTAGCAttatccattttgatttttgcgaGTTAGAAAACACAACAAT
CATGTAAAAGAAGTACCCTACATTGCAGAGAAAGCAGAGACAAGCTCTTG
ACTGAAACATAGAAGACAAAGCAACTGGTTCTAGTATCTCTACAATGTAA
AGTAAATCCTTGAATGTATTTGTCCTCAAACAAAGCAGGTTCCCATAAAG
GAAAGTAAGTAAACACACTGGGAAGTATGGTAgagctgcttttcaaaatc
ttttcgcAAATAACACAACAGGTACAAAACAGCCCAAAAAGATACCTGTT
AAAGTGATATTTGCCTTAATTCAAATAATGAACCGTCAACCTCTGTTAGG
GTTATTAGGTACAATCTGGGGGAAAGACCTAATCTACATACTTCCCAGTG
CATTTGCATCAACTCTTCTCAAAAGGAAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009298XLOC_009298Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016628-exon-sc0000243-1491911889:192796..193275TCONS_00016628-exon-sc0000243-1491911889:192796..193275Clytia hemisphaericaexon
TCONS_00016628-exon-sc0000243-1510915933:192796..193275TCONS_00016628-exon-sc0000243-1510915933:192796..193275Clytia hemisphaericaexon
TCONS_00016628-exon-sc0000243-1575043694:192796..193275TCONS_00016628-exon-sc0000243-1575043694:192796..193275Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000243supercontigsc0000243:192796..193275 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.261828	0.255324	18.3802	20.4475	1.05927	1.53459	1.34649	0.630282	0.551594	2.59631	1.45897	0.261564	0.261201	0.361679	0.0743374	0	0	0	0.417494	0.728129	0.379726	1.1113	0.150104	0.409398	0.843341	0.376331	0.718037	0.191577	0.726523	1.0363
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00016628 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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