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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00016629 ID=TCONS_00016629|Name=TCONS_00016629|organism=Clytia hemisphaerica|type=transcript|length=3042bp
GATGCATaggtccgcagattgaaaaatttcactcgcatcctggtggatga
tatcgtttgccaactcCTGCGGCAAGGGATCTAAACTAAAGAAGAGTAAA
tgagaaagtttcaatttagtTCTGGTTACACGTTTCcacaaaatatgata
aaataaaCGATAAAAAACGCCCTACTATGAAACTAcgaaaaataaatcaa
tattGATAAATTTGCAATTCATTTGAATGCATGGTGTACACTATATATAC
AATTAAGGAATAAATTTTAAATGGGTATTCATAATATCATaagttaaaaa
tgaaaatgatggtAGAAAACGTATAACGTTGgcaaaattctgaaatttct
gTACAATTGACAAGTCGGACTTAAAAAAAGGTTATCACTTTGCAGATGGC
GGGATTTGATAGCTTCAATCCTTTCAAAGCCCCCGTAAAAGAAATCCCAG
GTCAACAATTAAAATAATACAGTGTCAGATAAAGTAATTACCATTGAtct
aaaaaatctctaaaacgcaggcccgggggggggggtactacccttgtcga
ccgacgggggtgctccgctgaggttcgaaaaatggaccctacgtgggact
cgaaatttgcgaaaaaagtgaccctgaatgggactgaaattccaaaattt
tctactttttccccaaattttccaaaaaaaggcaccctacgagggactga
tttttctgttttggtgtttttgcgccCCTACctggactcgtggaggttaa
aaaaggtaccctgaccagcagagcatccccgtaacccatcttgccctagt
acccccccccccggggggcaGGCACttttaatagaccttatcggagtttt
tgatttttctaaaaaagcgatgcattgtgggattgtttcgagtgtattac
aatagaatttcctcgaggaattcctaagagatttctattgtaatgcactc
gaaacaatcccacaatgcatcgcttttttagaaaaatcaaaaactccgat
aaggtctattaaaaGTGCCtgccccccgggggggggggtactacccttgt
cgaccgacgggggtgctccgctgaggttcgaaaaatggaccctacgtggg
actcgaaatttgcgaaaaaagtgaccctgaatgggactgaaattccaaaa
ttttctactttttccccaaattttccaaaaaaaggcaccctacgagggac
tgatttttctgttttggtgtttttgcgccCCTACctggactcgtggaggt
taaaaaaggtaccctgaccagcagagcatccccgtaacccatcttgccct
agtacccccccccccggggggcaGGCACttttaatagaccttatcggagt
ttttgatttttctaaaaaagcgatgcattgtgggattgtttcgagagtat
tacaatagaaatctcttaggaattcctcgaggaaattctattgtaataca
ctcgaaacaatcccacaatgcatcgcttttttagaaaaatcaaaaactcc
gataaggtctattaacGGAGACTAACGGCGTCCGCCTATTGATTTGTCAA
CTGCATTCAATCGATAAAtaacaaaatggtaaaaaaacgaCCTACATTTA
AGGACTGGGGTACATGACAGAACTTATTTATTATCCTAGAATTATCCATC
TCAAACATCTAACATGATAAAAATATATGATAAAATCATCTACAAATGCA
ACGGAACAAGCCCCATAGTCCCAAATCCAAAATAACCGTAATTCCGGCTA
TCTTTCAAAAGCCTCAACATTTAAATCAACCTTATTGGTTAAATCTCAAA
ATTGTGATGTAATTGATCCGAATCGACCAATCAATGCTAGTCGTTCTCGT
AAATtggattaaaattttaaaattttggcttATAGTTGGATGAATtagtc
aaaaaatcaaaatggaacaatattttcgaaatttcagtCTTTCAAAAGGC
AGCACTcgaagttttgaaagtttggcaGTAAGTACAGTATATACTAGTCA
GCCAGAGATTTGGGGGTACCTGAACCCTGGAGGACCCTATGATATACAGT
AACGTATACAGTTGACTCTTGCTAATTCGAACACGAACAGAGAATCTTAT
TTAGTTCGAATaaaagagagattcgaattatcgAAAGAATTTTAAAGGCT
TTCTTCTTGACGGGGGCTGGaaacaatttcaatttatagaaagattcgaa
atatAGAGGCTCGAATAAGCGAGAGCTTACTGTAaatctttgttgttgtt
gaaaattCGAGTTCTCAAATCCTTTATTACTCAAGCTTACGTCATCCTTG
CTTttggaaacacccgaaaaagtTGCCTTTGATCCTTGTGTTTACTCATT
TTAATAGTGTAAGTGTAGTGGAGTAATCCTACCCTCGGGTAAGTAGCTct
tgaaagaggagccttcaggTAAGTAGCTcttgaaagaggagccttcgggt
cacctccgactgcggtcacaGATTTAATAACAATCAGGGTTCAAACTACT
GCTTTTTCGGTGTTTCAGTTAATAAAagtgacgtaatcttgacttaggAA
GAATGTAGCGTTCTTTCTGACGGTTGAATCGCATTCCTGTCCTAGGTTCC
CTTGCTGGAACGTCTAACCATCAAAACTTATACAGTTTCATACGAAGATA
ATCGTTTTTGTCTTGATTTCTTCCTTTCTTTTAACCAGGGTGGGTTTTTC
AATTTCCATCTCGCCAGTAACAACAACCCCAAGATGAGCAACGTCAAGAA
GCAATAGAACAACAAGAATCCTGGAAACCGCCCTTTCGTGGCGGTGGTTA
GATCAACGCCCAACGCCTTTCTCCTTCCTTCCATCGTTAACATCGAATCG
TCTAGGTTGGATCCCTATGAAGAGAAATGTAAATTCTTACAGGTTAGAAA
TAACATTAATTTAGCCTGAGGTTTTTTAAATGATATATATATAGGTCAAG
TGCACCCCTTTAATAGAGGGATGCTGACAGGCACCCTAAATGATAAATAA
TGAATTGATGCAAAAGACATTTTCCGCGAAGTAAGACATTCG Run BLAST on NCBI transcript from alignment at sc0000243:221179..224220 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00016629 ID=TCONS_00016629|Name=TCONS_00016629|organism=Clytia hemisphaerica|type=transcript|length=3042bp|location=Sequence derived from alignment at sc0000243:221179..224220 (Clytia hemisphaerica)
CGAATGTCTTACTTCGCGGAAAATGTCTTTTGCATCAATTCATTATTTAT
CATTTAGGGTGCCTGTCAGCATCCCTCTATTAAAGGGGTGCACTTGACCT
ATATATATATCATTTAAAAAACCTCAGGCTAAATTAATGTTATTTCTAAC
CTGTAAGAATTTACATTTCTCTTCATAGGGATCCAACCTAGACGATTCGA
TGTTAACGATGGAAGGAAGGAGAAAGGCGTTGGGCGTTGATCTAACCACC
GCCACGAAAGGGCGGTTTCCAGGATTCTTGTTGTTCTATTGCTTCTTGAC
GTTGCTCATCTTGGGGTTGTTGTTACTGGCGAGATGGAAATTGAAAAACC
CACCCTGGTTAAAAGAAAGGAAGAAATCAAGACAAAAACGATTATCTTCG
TATGAAACTGTATAAGTTTTGATGGTTAGACGTTCCAGCAAGGGAACCTA
GGACAGGAATGCGATTCAACCGTCAGAAAGAACGCTACATTCTTcctaag
tcaagattacgtcactTTTATTAACTGAAACACCGAAAAAGCAGTAGTTT
GAACCCTGATTGTTATTAAATCtgtgaccgcagtcggaggtgacccgaag
gctcctctttcaagAGCTACTTAcctgaaggctcctctttcaagAGCTAC
TTACCCGAGGGTAGGATTACTCCACTACACTTACACTATTAAAATGAGTA
AACACAAGGATCAAAGGCAactttttcgggtgtttccaaAAGCAAGGATG
ACGTAAGCTTGAGTAATAAAGGATTTGAGAACTCGaattttcaacaacaa
caaagattTACAGTAAGCTCTCGCTTATTCGAGCCTCTatatttcgaatc
tttctataaattgaaattgtttCCAGCCCCCGTCAAGAAGAAAGCCTTTA
AAATTCTTTcgataattcgaatctctcttttATTCGAACTAAATAAGATT
CTCTGTTCGTGTTCGAATTAGCAAGAGTCAACTGTATACGTTACTGTATA
TCATAGGGTCCTCCAGGGTTCAGGTACCCCCAAATCTCTGGCTGACTAGT
ATATACTGTACTTACtgccaaactttcaaaacttcgAGTGCTGCCTTTTG
AAAGactgaaatttcgaaaatattgttccattttgattttttgactaATT
CATCCAACTATaagccaaaattttaaaattttaatccaATTTACGAGAAC
GACTAGCATTGATTGGTCGATTCGGATCAATTACATCACAATTTTGAGAT
TTAACCAATAAGGTTGATTTAAATGTTGAGGCTTTTGAAAGATAGCCGGA
ATTACGGTTATTTTGGATTTGGGACTATGGGGCTTGTTCCGTTGCATTTG
TAGATGATTTTATCATATATTTTTATCATGTTAGATGTTTGAGATGGATA
ATTCTAGGATAATAAATAAGTTCTGTCATGTACCCCAGTCCTTAAATGTA
GGtcgtttttttaccattttgttaTTTATCGATTGAATGCAGTTGACAAA
TCAATAGGCGGACGCCGTTAGTCTCCgttaatagaccttatcggagtttt
tgatttttctaaaaaagcgatgcattgtgggattgtttcgagtgtattac
aatagaatttcctcgaggaattcctaagagatttctattgtaatactctc
gaaacaatcccacaatgcatcgcttttttagaaaaatcaaaaactccgat
aaggtctattaaaaGTGCCtgccccccgggggggggggtactagggcaag
atgggttacggggatgctctgctggtcagggtaccttttttaacctccac
gagtccagGTAGGggcgcaaaaacaccaaaacagaaaaatcagtccctcg
tagggtgcctttttttggaaaatttggggaaaaagtagaaaattttggaa
tttcagtcccattcagggtcacttttttcgcaaatttcgagtcccacgta
gggtccatttttcgaacctcagcggagcacccccgtcggtcgacaagggt
agtacccccccccccggggggcaGGCACttttaatagaccttatcggagt
ttttgatttttctaaaaaagcgatgcattgtgggattgtttcgagtgcat
tacaatagaaatctcttaggaattcctcgaggaaattctattgtaataca
ctcgaaacaatcccacaatgcatcgcttttttagaaaaatcaaaaactcc
gataaggtctattaaaaGTGCCtgccccccgggggggggggtactagggc
aagatgggttacggggatgctctgctggtcagggtaccttttttaacctc
cacgagtccagGTAGGggcgcaaaaacaccaaaacagaaaaatcagtccc
tcgtagggtgcctttttttggaaaatttggggaaaaagtagaaaattttg
gaatttcagtcccattcagggtcacttttttcgcaaatttcgagtcccac
gtagggtccatttttcgaacctcagcggagcacccccgtcggtcgacaag
ggtagtacccccccccccgggcctgcgttttagagattttttagaTCAAT
GGTAATTACTTTATCTGACACTGTATTATTTTAATTGTTGACCTGGGATT
TCTTTTACGGGGGCTTTGAAAGGATTGAAGCTATCAAATCCCGCCATCTG
CAAAGTGATAACCTTTTTTTAAGTCCGACTTGTCAATTGTAcagaaattt
cagaattttgcCAACGTTATACGTTTTCTaccatcattttcatttttaac
ttATGATATTATGAATACCCATTTAAAATTTATTCCTTAATTGTATATAT
AGTGTACACCATGCATTCAAATGAATTGCAAATTTATCaatattgattta
tttttcgTAGTTTCATAGTAGGGCGTTTTTTATCGtttattttatcatat
tttgtgGAAACGTGTAACCAGAactaaattgaaactttctcaTTTACTCT
TCTTTAGTTTAGATCCCTTGCCGCAGgagttggcaaacgatatcatccac
caggatgcgagtgaaatttttcaatctgcggacctATGCATC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00016629-exon-sc0000243-1491911889:221179..224220 | TCONS_00016629-exon-sc0000243-1491911889:221179..224220 | Clytia hemisphaerica | exon |
| TCONS_00016629-exon-sc0000243-1510915933:221179..224220 | TCONS_00016629-exon-sc0000243-1510915933:221179..224220 | Clytia hemisphaerica | exon |
| TCONS_00016629-exon-sc0000243-1575043694:221179..224220 | TCONS_00016629-exon-sc0000243-1575043694:221179..224220 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000243 | supercontig | sc0000243:221179..224220 . |
Blast
The following BLAST results are available for this feature:
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